Wall clock time and date at job start Tue Mar 31 2020 14:18:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.42901 * 109.47091 * 2 1
4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1
5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2
6 6 N 1.31129 * 126.54729 * 89.71240 * 5 4 3
7 7 C 1.34497 * 105.60849 * 179.91609 * 6 5 4
8 8 C 1.50703 * 126.28293 * 180.12449 * 7 6 5
9 9 H 1.09000 * 109.47612 * 345.24129 * 8 7 6
10 10 C 1.53007 * 109.46747 * 105.24343 * 8 7 6
11 11 N 1.46496 * 109.47140 * 225.23645 * 8 7 6
12 12 C 1.34776 * 120.00093 * 154.99954 * 11 8 7
13 13 O 1.21290 * 119.99816 * 0.02562 * 12 11 8
14 14 C 1.50701 * 120.00558 * 180.02562 * 12 11 8
15 15 C 1.52995 * 109.47618 * 180.02562 * 14 12 11
16 16 C 1.52995 * 109.47359 * 180.02562 * 15 14 12
17 17 C 1.53004 * 109.47284 * 180.02562 * 16 15 14
18 18 C 1.50695 * 109.47228 * 179.97438 * 17 16 15
19 19 H 1.08001 * 120.00023 * 0.02562 * 18 17 16
20 20 C 1.37874 * 119.99930 * 179.97438 * 18 17 16
21 21 N 1.31506 * 120.00486 * 0.02562 * 20 18 17
22 22 Si 1.86810 * 119.99794 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47034 * 90.00238 * 22 20 18
24 24 H 1.48507 * 109.46632 * 210.00102 * 22 20 18
25 25 H 1.48502 * 109.47092 * 329.99765 * 22 20 18
26 26 N 1.29942 * 107.42634 * 0.35011 * 7 6 5
27 27 O 1.21295 * 110.25076 * 359.78187 * 26 7 6
28 28 H 1.09003 * 109.47090 * 59.99900 * 1 2 3
29 29 H 1.08996 * 109.47307 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47184 * 300.00269 * 1 2 3
31 31 H 1.08994 * 109.47303 * 240.00013 * 2 1 3
32 32 H 1.09002 * 109.47060 * 119.99543 * 2 1 3
33 33 H 1.09001 * 109.47103 * 300.00246 * 4 3 2
34 34 H 1.09004 * 109.47054 * 59.99750 * 4 3 2
35 35 H 1.08998 * 109.47039 * 180.02562 * 10 8 7
36 36 H 1.09001 * 109.46733 * 299.99334 * 10 8 7
37 37 H 1.08997 * 109.47344 * 60.00066 * 10 8 7
38 38 H 0.97006 * 120.00520 * 335.00923 * 11 8 7
39 39 H 1.09005 * 109.47156 * 300.00694 * 14 12 11
40 40 H 1.09001 * 109.46373 * 60.00349 * 14 12 11
41 41 H 1.08999 * 109.47399 * 300.00935 * 15 14 12
42 42 H 1.09003 * 109.47172 * 60.00126 * 15 14 12
43 43 H 1.09005 * 109.47006 * 300.00338 * 16 15 14
44 44 H 1.08999 * 109.47519 * 60.00119 * 16 15 14
45 45 H 1.09004 * 109.46500 * 299.99952 * 17 16 15
46 46 H 1.08997 * 109.46976 * 59.99961 * 17 16 15
47 47 H 0.97000 * 120.00711 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4602 0.0006
5 6 3.8195 2.9162 -0.0001
6 7 4.0152 3.6727 1.0530
7 6 4.3435 4.8850 0.5718
8 6 4.6692 6.1098 1.3871
9 1 4.3517 5.9550 2.4183
10 6 6.1781 6.3606 1.3502
11 7 3.9679 7.2686 0.8289
12 6 3.6809 8.3253 1.6147
13 8 4.0036 8.3171 2.7838
14 6 2.9590 9.5172 1.0408
15 6 2.7595 10.5681 2.1346
16 6 2.0260 11.7778 1.5521
17 6 1.8271 12.8290 2.6459
18 6 1.1052 14.0208 2.0719
19 1 0.8167 14.0276 1.0312
20 6 0.8121 15.1020 2.8757
21 7 1.1629 15.0936 4.1430
22 14 -0.0834 16.5791 2.1643
23 1 -1.5487 16.3878 2.3118
24 1 0.3313 17.8063 2.8906
25 1 0.2554 16.7174 0.7250
26 7 4.3235 4.8073 -0.7252
27 8 4.0247 3.6847 -1.0740
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 3.8333 0.9767 0.8908
34 1 3.8340 0.9764 -0.8892
35 1 6.4137 7.2462 1.9402
36 1 6.6999 5.4984 1.7655
37 1 6.4956 6.5155 0.3190
38 1 3.7099 7.2754 -0.1062
39 1 3.5498 9.9443 0.2304
40 1 1.9884 9.2035 0.6565
41 1 2.1689 10.1413 2.9453
42 1 3.7302 10.8817 2.5186
43 1 2.6163 12.2048 0.7413
44 1 1.0552 11.4640 1.1684
45 1 1.2369 12.4022 3.4569
46 1 2.7980 13.1428 3.0291
47 1 0.9564 15.8541 4.7086
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000589628595.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:18:14
Heat of formation + Delta-G solvation = -63.765016 kcal
Electronic energy + Delta-G solvation = -26217.414553 eV
Core-core repulsion = 22209.110422 eV
Total energy + Delta-G solvation = -4008.304131 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 325.183 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-46.89684 -41.06076 -39.22069 -37.98694 -36.68330 -36.15176 -34.63362 -34.07480
-32.37346 -31.95388 -30.93040 -28.50131 -27.55166 -26.32688 -24.65668 -24.12296
-23.71311 -22.26683 -21.64645 -21.37898 -19.49121 -19.07108 -18.42697 -17.93076
-17.66035 -17.51476 -17.11765 -16.92187 -16.52494 -16.39423 -15.69817 -15.51117
-14.99414 -14.62867 -14.54065 -14.50502 -13.96678 -13.72626 -13.63116 -13.62081
-13.44610 -13.29056 -13.19308 -12.84062 -12.83417 -12.66430 -12.38482 -12.34680
-12.28064 -12.18974 -12.17122 -12.14791 -11.39479 -11.38440 -11.33098 -11.18507
-10.85366 -10.71408 -10.54982 -10.43132 -8.18641 -6.30863 -0.18114 0.79041
1.40009 1.42356 1.50188 1.53430 1.53952 1.83564 2.32305 2.41871
2.68229 3.02477 3.13939 3.57648 3.71296 3.89995 3.98490 4.02819
4.13155 4.16229 4.19615 4.27578 4.34247 4.40463 4.49478 4.55806
4.60382 4.65936 4.70727 4.75164 4.81444 4.85651 4.87052 5.03037
5.06154 5.17074 5.18115 5.29864 5.32302 5.37916 5.56640 5.78041
5.88004 6.04337 6.25285 6.31509 6.87362 6.87933 7.08428 7.38667
8.93475
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.017608 B = 0.001688 C = 0.001598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.762760 B =16579.470132 C =17522.208166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.055 3.945
3 O -0.414 6.414
4 C 0.157 3.843
5 C 0.192 3.808
6 N -0.479 5.479
7 C 0.158 3.842
8 C 0.236 3.764
9 H 0.102 0.898
10 C -0.150 4.150
11 N -0.719 5.719
12 C 0.521 3.479
13 O -0.573 6.573
14 C -0.127 4.127
15 C -0.095 4.095
16 C -0.096 4.096
17 C 0.018 3.982
18 C -0.543 4.543
19 H 0.065 0.935
20 C -0.006 4.006
21 N -0.937 5.937
22 Si 0.969 3.031
23 H -0.272 1.272
24 H -0.283 1.283
25 H -0.260 1.260
26 N -0.375 5.375
27 O 0.096 5.904
28 H 0.056 0.944
29 H 0.095 0.905
30 H 0.049 0.951
31 H 0.079 0.921
32 H 0.070 0.930
33 H 0.119 0.881
34 H 0.129 0.871
35 H 0.069 0.931
36 H 0.082 0.918
37 H 0.071 0.929
38 H 0.415 0.585
39 H 0.122 0.878
40 H 0.116 0.884
41 H 0.044 0.956
42 H 0.048 0.952
43 H 0.061 0.939
44 H 0.059 0.941
45 H -0.015 1.015
46 H -0.013 1.013
47 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.611 -36.954 -14.761 40.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.020 4.020
3 O -0.333 6.333
4 C 0.079 3.921
5 C -0.029 4.029
6 N -0.214 5.214
7 C -0.115 4.115
8 C 0.129 3.871
9 H 0.120 0.880
10 C -0.209 4.209
11 N -0.373 5.373
12 C 0.309 3.691
13 O -0.452 6.452
14 C -0.167 4.167
15 C -0.134 4.134
16 C -0.134 4.134
17 C -0.019 4.019
18 C -0.581 4.581
19 H 0.084 0.916
20 C -0.203 4.203
21 N -0.577 5.577
22 Si 0.793 3.207
23 H -0.198 1.198
24 H -0.209 1.209
25 H -0.184 1.184
26 N -0.080 5.080
27 O 0.034 5.966
28 H 0.075 0.925
29 H 0.113 0.887
30 H 0.068 0.932
31 H 0.097 0.903
32 H 0.088 0.912
33 H 0.137 0.863
34 H 0.147 0.853
35 H 0.088 0.912
36 H 0.101 0.899
37 H 0.090 0.910
38 H 0.252 0.748
39 H 0.140 0.860
40 H 0.134 0.866
41 H 0.063 0.937
42 H 0.066 0.934
43 H 0.080 0.920
44 H 0.078 0.922
45 H 0.003 0.997
46 H 0.005 0.995
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 6.903 -35.943 -13.857 39.135
hybrid contribution -0.471 0.722 -0.028 0.863
sum 6.433 -35.221 -13.885 38.401
Atomic orbital electron populations
1.21819 0.93709 1.03546 1.02346 1.22780 0.95672 0.80997 1.02560
1.87923 1.19299 1.30110 1.96014 1.20951 0.83352 0.80681 1.07091
1.29048 0.95389 0.98687 0.79747 1.71890 1.17964 1.01593 1.29945
1.25795 1.01308 0.95946 0.88494 1.18980 0.94460 0.78073 0.95605
0.88032 1.22107 0.91669 1.03555 1.03564 1.45976 1.60207 1.16526
1.14609 1.21213 0.77896 0.84213 0.85749 1.90714 1.54458 1.81428
1.18551 1.21688 1.02698 0.92164 1.00142 1.21251 1.00109 0.94740
0.97255 1.21454 0.99527 0.94246 0.98175 1.19060 0.94628 0.93841
0.94364 1.21760 1.37180 1.02334 0.96863 0.91648 1.26082 0.96881
1.02181 0.95182 1.70125 1.48462 1.32160 1.06945 0.85386 0.78625
0.77814 0.78826 1.19754 1.20854 1.18384 1.74580 1.18736 0.99490
1.15210 1.85290 1.61115 1.14494 1.35747 0.92510 0.88669 0.93154
0.90294 0.91187 0.86290 0.85325 0.91250 0.89881 0.90955 0.74840
0.86026 0.86591 0.93719 0.93362 0.92005 0.92224 0.99669 0.99506
0.92855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.04 10.28 71.98 0.74 -0.30 16
2 C 0.06 0.28 6.66 71.98 0.48 0.76 16
3 O -0.41 -4.80 10.33 -148.98 -1.54 -6.34 16
4 C 0.16 1.02 6.56 71.24 0.47 1.49 16
5 C 0.19 2.91 8.14 88.38 0.72 3.63 16
6 N -0.48 -9.99 11.55 -303.24 -3.50 -13.50 16
7 C 0.16 3.38 7.01 138.46 0.97 4.35 16
8 C 0.24 5.27 3.12 44.25 0.14 5.40 16
9 H 0.10 2.67 7.58 -2.39 -0.02 2.65 16
10 C -0.15 -2.85 9.47 71.98 0.68 -2.17 16
11 N -0.72 -16.02 5.07 -446.08 -2.26 -18.28 16
12 C 0.52 14.77 7.79 87.66 0.68 15.45 16
13 O -0.57 -21.30 15.65 -3.06 -0.05 -21.35 16
14 C -0.13 -3.31 5.70 29.85 0.17 -3.13 16
15 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16
16 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16
17 C 0.02 1.01 4.97 29.85 0.15 1.16 16
18 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16
19 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16
20 C -0.01 -0.36 5.46 84.66 0.46 0.10 16
21 N -0.94 -59.48 13.29 21.44 0.28 -59.19 16
22 Si 0.97 45.37 29.54 68.60 2.03 47.40 16
23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
24 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16
25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16
26 N -0.38 -7.56 11.86 -60.36 -0.72 -8.28 16
27 O 0.10 1.64 11.31 74.90 0.85 2.48 16
28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16
30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16
32 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16
33 H 0.12 0.33 8.14 -2.39 -0.02 0.32 16
34 H 0.13 -0.12 8.14 -2.38 -0.02 -0.14 16
35 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16
36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
38 H 0.41 7.51 8.36 -92.70 -0.77 6.73 16
39 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16
40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16
41 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16
42 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16
43 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16
44 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
45 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16
46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16
47 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16
Total: -1.00 -80.45 402.29 1.47 -78.99
By element:
Atomic # 1 Polarization: 10.14 SS G_CDS: 0.19 Total: 10.33 kcal
Atomic # 6 Polarization: -18.45 SS G_CDS: 6.19 Total: -12.26 kcal
Atomic # 7 Polarization: -93.05 SS G_CDS: -6.20 Total: -99.25 kcal
Atomic # 8 Polarization: -24.46 SS G_CDS: -0.74 Total: -25.20 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -80.45 1.47 -78.99 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000589628595.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.223 kcal
(2) G-P(sol) polarization free energy of solvation -80.454 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds