Wall clock time and date at job start Tue Mar 31 2020 16:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 N 1.30876 * 125.87742 * 2 1 4 4 N 1.40083 * 108.21533 * 180.29177 * 3 2 1 5 5 C 1.40190 * 126.05231 * 179.69634 * 4 3 2 6 6 C 1.38855 * 120.06298 * 185.02723 * 5 4 3 7 7 C 1.38096 * 119.92800 * 180.02562 * 6 5 4 8 8 C 1.38295 * 120.07105 * 359.97438 * 7 6 5 9 9 C 1.38256 * 120.13196 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.96845 * 180.02562 * 9 8 7 11 11 C 1.38143 * 120.06424 * 359.76729 * 9 8 7 12 12 C 1.35222 * 107.89529 * 359.72119 * 4 3 2 13 13 C 1.35320 * 107.71386 * 359.97438 * 12 4 3 14 14 C 1.50698 * 126.03587 * 179.97438 * 13 12 4 15 15 N 1.46904 * 109.47217 * 260.02298 * 14 13 12 16 16 C 1.46904 * 110.99787 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46561 * 185.18364 * 16 15 14 18 18 C 1.50701 * 115.54929 * 297.13105 * 17 16 15 19 19 H 1.08001 * 119.99939 * 95.22291 * 18 17 16 20 20 C 1.37878 * 120.00209 * 275.21506 * 18 17 16 21 21 N 1.31511 * 119.99602 * 7.10871 * 20 18 17 22 22 Si 1.86794 * 119.99960 * 187.10386 * 20 18 17 23 23 H 1.48504 * 109.47027 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47318 * 300.00392 * 22 20 18 25 25 H 1.48500 * 109.46957 * 60.00398 * 22 20 18 26 26 C 1.53003 * 117.50047 * 82.80788 * 17 16 15 27 27 C 1.53004 * 117.49784 * 151.46586 * 17 16 15 28 28 H 1.08998 * 109.46761 * 270.17128 * 1 2 3 29 29 H 1.08996 * 109.47114 * 30.17169 * 1 2 3 30 30 H 1.09002 * 109.47089 * 150.17423 * 1 2 3 31 31 H 1.07999 * 120.03464 * 0.02562 * 6 5 4 32 32 H 1.08010 * 119.96572 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.93948 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47406 * 89.99853 * 10 9 8 35 35 H 1.08998 * 109.47278 * 210.00105 * 10 9 8 36 36 H 1.09003 * 109.47126 * 329.99913 * 10 9 8 37 37 H 1.08008 * 120.03407 * 180.25331 * 11 9 8 38 38 H 1.08007 * 126.14771 * 179.97438 * 12 4 3 39 39 H 1.09005 * 109.47183 * 140.02869 * 14 13 12 40 40 H 1.08995 * 109.47302 * 20.02591 * 14 13 12 41 41 H 1.00891 * 111.00013 * 303.95827 * 15 14 13 42 42 H 1.08992 * 109.46989 * 65.18308 * 16 15 14 43 43 H 1.08996 * 109.47041 * 305.18019 * 16 15 14 44 44 H 0.96998 * 120.00629 * 355.39595 * 21 20 18 45 45 H 1.09000 * 117.49909 * 215.00160 * 26 17 16 46 46 H 1.09002 * 117.49610 * 0.02562 * 26 17 16 47 47 H 1.09010 * 117.49663 * 359.97438 * 27 17 16 48 48 H 1.08997 * 117.50246 * 144.97048 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0605 0.0000 4 7 3.6089 0.6354 -0.0068 5 6 4.7389 1.4651 -0.0150 6 6 6.0075 0.9116 -0.1264 7 6 7.1187 1.7314 -0.1337 8 6 6.9691 3.1024 -0.0306 9 6 5.7072 3.6565 0.0794 10 6 5.5484 5.1509 0.1909 11 6 4.5915 2.8419 0.0819 12 6 3.6144 -0.7168 -0.0046 13 6 2.3271 -1.1337 0.0039 14 6 1.8592 -2.5662 0.0086 15 7 1.4707 -2.9589 -1.3527 16 6 1.0075 -4.3526 -1.3865 17 6 0.7354 -4.7645 -2.8347 18 6 -0.3563 -3.9967 -3.5346 19 1 -0.1079 -3.1451 -4.1506 20 6 -1.6722 -4.3816 -3.3886 21 7 -1.9894 -5.3275 -2.5318 22 14 -3.0043 -3.5594 -4.4078 23 1 -4.3239 -4.1481 -4.0652 24 1 -3.0220 -2.1032 -4.1172 25 1 -2.7261 -3.7728 -5.8508 26 6 1.9295 -5.2202 -3.6758 27 6 0.8992 -6.2433 -3.1913 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8916 -0.5111 31 1 6.1249 -0.1589 -0.2073 32 1 8.1057 1.3015 -0.2207 33 1 7.8396 3.7416 -0.0369 34 1 5.4517 5.5814 -0.8058 35 1 4.6558 5.3790 0.7734 36 1 6.4229 5.5733 0.6858 37 1 3.6057 3.2756 0.1637 38 1 4.4892 -1.3503 -0.0088 39 1 1.0018 -2.6663 0.6742 40 1 2.6663 -3.2110 0.3563 41 1 0.7685 -2.3357 -1.7222 42 1 0.0908 -4.4450 -0.8041 43 1 1.7744 -5.0007 -0.9624 44 1 -1.2921 -5.8006 -2.0514 45 1 1.9255 -4.9646 -4.7354 46 1 2.9088 -5.2270 -3.1973 47 1 1.2012 -6.9228 -2.3941 48 1 0.2171 -6.6611 -3.9317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593621303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:49 Heat of formation + Delta-G solvation = 101.067847 kcal Electronic energy + Delta-G solvation = -26510.759218 eV Core-core repulsion = 22952.744791 eV Total energy + Delta-G solvation = -3558.014427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68502 -40.21767 -39.01968 -36.45547 -35.07117 -33.89047 -33.35851 -32.15354 -31.22299 -28.98972 -27.68573 -27.62472 -26.73415 -24.61780 -23.54590 -22.97726 -22.71262 -21.39600 -21.20115 -20.37196 -18.70088 -18.34399 -17.11157 -16.67943 -16.60091 -16.14888 -16.00845 -15.61031 -15.53260 -15.35980 -15.00237 -14.71433 -14.52057 -14.22483 -14.16522 -14.11477 -14.01734 -13.81076 -13.25867 -13.19247 -13.04957 -12.92404 -12.79617 -12.64283 -12.50426 -12.47081 -12.16764 -12.08770 -11.94889 -11.52361 -11.31830 -10.97027 -10.42768 -10.34997 -10.25030 -10.01291 -9.81434 -9.19963 -8.91129 -8.47599 -6.20602 -0.19227 0.28401 1.13151 1.34335 1.55816 1.56119 1.61631 1.80891 2.60149 2.73083 3.21702 3.28310 3.33569 3.67613 3.77142 3.84475 3.86257 4.06349 4.12058 4.17982 4.27399 4.31341 4.32853 4.37824 4.49870 4.55080 4.59355 4.66342 4.69041 4.76546 4.79680 4.81793 4.84086 4.90018 4.91341 4.92710 4.96340 5.08731 5.13285 5.20905 5.29917 5.36943 5.49503 5.52326 5.54148 5.61063 5.79462 6.19053 6.23479 6.33403 6.35322 6.56532 6.59135 6.81047 7.59428 8.92134 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.002595 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.144992 B =10788.492684 C =11502.360123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.083 3.917 3 N -0.321 5.321 4 N -0.330 5.330 5 C 0.140 3.860 6 C -0.156 4.156 7 C -0.084 4.084 8 C -0.132 4.132 9 C -0.068 4.068 10 C -0.114 4.114 11 C -0.146 4.146 12 C 0.072 3.928 13 C -0.226 4.226 14 C 0.140 3.860 15 N -0.673 5.673 16 C 0.114 3.886 17 C 0.004 3.996 18 C -0.574 4.574 19 H 0.037 0.963 20 C -0.017 4.017 21 N -0.932 5.932 22 Si 1.103 2.897 23 H -0.287 1.287 24 H -0.272 1.272 25 H -0.280 1.280 26 C -0.167 4.167 27 C -0.186 4.186 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.205 0.795 39 H 0.030 0.970 40 H 0.086 0.914 41 H 0.338 0.662 42 H 0.001 0.999 43 H 0.058 0.942 44 H 0.266 0.734 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.292 16.234 8.744 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 N -0.142 5.142 4 N -0.105 5.105 5 C 0.048 3.952 6 C -0.176 4.176 7 C -0.102 4.102 8 C -0.150 4.150 9 C -0.069 4.069 10 C -0.171 4.171 11 C -0.166 4.166 12 C -0.071 4.071 13 C -0.236 4.236 14 C 0.010 3.990 15 N -0.304 5.304 16 C -0.015 4.015 17 C 0.003 3.997 18 C -0.612 4.612 19 H 0.055 0.945 20 C -0.217 4.217 21 N -0.568 5.568 22 Si 0.927 3.073 23 H -0.213 1.213 24 H -0.197 1.197 25 H -0.205 1.205 26 C -0.204 4.204 27 C -0.224 4.224 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.222 0.778 39 H 0.048 0.952 40 H 0.105 0.895 41 H 0.156 0.844 42 H 0.019 0.981 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.388 17.431 8.327 25.991 hybrid contribution 0.254 -1.308 0.463 1.411 sum 17.642 16.123 8.791 25.465 Atomic orbital electron populations 1.20270 0.85401 1.03625 1.03967 1.22758 0.97907 0.90401 0.97342 1.77276 0.86430 1.23220 1.27307 1.45795 1.04203 1.04615 1.55861 1.17967 0.84007 0.90334 1.02873 1.21114 0.89859 1.01867 1.04800 1.21365 0.98821 0.93362 0.96689 1.21501 0.97275 0.95607 1.00615 1.20131 0.92295 0.97290 0.97145 1.20868 1.03788 0.89182 1.03213 1.20826 1.00103 0.91164 1.04482 1.22756 1.00060 0.84053 1.00226 1.20055 0.92204 0.95973 1.15382 1.20114 0.99190 0.90027 0.89643 1.60492 1.46330 1.03124 1.20472 1.21286 0.95295 0.89466 0.95453 1.19157 0.95394 0.92510 0.92630 1.21483 0.92701 1.15178 1.31811 0.94476 1.26860 1.01000 0.96994 0.96846 1.70833 1.37056 1.24337 1.24561 0.83091 0.73633 0.75667 0.74913 1.21259 1.19744 1.20546 1.22731 0.93851 1.04700 0.99151 1.22716 1.02998 0.93748 1.02922 0.88747 0.90118 0.91048 0.83904 0.81840 0.82453 0.90150 0.91638 0.89104 0.86348 0.77823 0.95189 0.89543 0.84429 0.98083 0.92378 0.92359 0.91371 0.89114 0.89895 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.26 71.24 0.73 -1.36 16 2 C 0.08 2.67 7.22 43.11 0.31 2.99 16 3 N -0.32 -10.73 11.88 -47.33 -0.56 -11.29 16 4 N -0.33 -9.79 3.80 -187.76 -0.71 -10.50 16 5 C 0.14 3.53 6.68 38.09 0.25 3.79 16 6 C -0.16 -2.93 9.46 22.38 0.21 -2.72 16 7 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 8 C -0.13 -1.74 9.70 22.29 0.22 -1.52 16 9 C -0.07 -1.16 5.88 -19.88 -0.12 -1.28 16 10 C -0.11 -1.32 10.01 71.23 0.71 -0.61 16 11 C -0.15 -3.46 9.32 22.38 0.21 -3.25 16 12 C 0.07 1.98 10.70 83.50 0.89 2.87 16 13 C -0.23 -6.98 5.61 -20.13 -0.11 -7.09 16 14 C 0.14 4.44 5.79 85.56 0.49 4.93 16 15 N -0.67 -26.23 6.45 -517.93 -3.34 -29.58 16 16 C 0.11 4.94 5.46 86.30 0.47 5.41 16 17 C 0.00 0.19 1.14 -52.92 -0.06 0.12 16 18 C -0.57 -31.33 8.24 25.60 0.21 -31.12 16 19 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 20 C -0.02 -0.93 5.39 84.66 0.46 -0.47 16 21 N -0.93 -54.64 13.57 21.45 0.29 -54.35 16 22 Si 1.10 49.99 29.91 68.60 2.05 52.05 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 C -0.17 -7.26 9.96 30.62 0.30 -6.96 16 27 C -0.19 -8.55 8.74 30.62 0.27 -8.29 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 31 H 0.14 2.19 6.77 -2.91 -0.02 2.17 16 32 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.09 0.66 8.09 -2.39 -0.02 0.64 16 37 H 0.12 3.11 7.71 -2.91 -0.02 3.09 16 38 H 0.21 4.08 7.07 -2.91 -0.02 4.06 16 39 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.34 14.53 7.45 -89.70 -0.67 13.86 16 42 H 0.00 0.05 7.83 -2.39 -0.02 0.03 16 43 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 44 H 0.27 15.58 6.20 -92.71 -0.57 15.01 16 45 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.09 3.49 8.14 -2.39 -0.02 3.48 16 47 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 48 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -68.02 398.20 3.88 -64.14 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.48 Total: 35.01 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 5.68 Total: -45.48 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.33 Total: -105.72 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.05 kcal Total: -68.02 3.88 -64.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593621303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.212 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds