Wall clock time and date at job start Tue Mar 31 2020 16:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38348 * 119.93864 * 2 1
4 4 C 1.38296 * 120.24014 * 179.72194 * 3 2 1
5 5 C 1.38050 * 120.11973 * 0.54833 * 4 3 2
6 6 C 1.39310 * 119.87647 * 359.72651 * 5 4 3
7 7 C 1.48415 * 120.11820 * 179.97438 * 6 5 4
8 8 N 1.31623 * 126.03980 * 137.22697 * 7 6 5
9 9 N 1.40063 * 108.10871 * 180.02562 * 8 7 6
10 10 H 0.97002 * 125.93094 * 179.97438 * 9 8 7
11 11 C 1.35038 * 108.14491 * 359.97438 * 9 8 7
12 12 C 1.35088 * 107.97129 * 359.73123 * 11 9 8
13 13 C 1.50701 * 126.07425 * 180.27480 * 12 11 9
14 14 N 1.46897 * 109.47201 * 105.90884 * 13 12 11
15 15 C 1.46842 * 111.00352 * 288.88042 * 14 13 12
16 16 C 1.53037 * 109.52516 * 174.16292 * 15 14 13
17 17 C 1.53109 * 109.28275 * 59.17623 * 16 15 14
18 18 C 1.53128 * 109.16144 * 302.34751 * 17 16 15
19 19 H 1.09000 * 109.53187 * 297.69221 * 18 17 16
20 20 C 1.50695 * 109.50308 * 177.59546 * 18 17 16
21 21 H 1.08003 * 119.99678 * 240.19749 * 20 18 17
22 22 C 1.37874 * 120.00234 * 60.19931 * 20 18 17
23 23 N 1.31514 * 120.00169 * 359.97438 * 22 20 18
24 24 Si 1.86802 * 120.00180 * 179.97438 * 22 20 18
25 25 H 1.48505 * 109.47150 * 89.99911 * 24 22 20
26 26 H 1.48501 * 109.47389 * 209.99779 * 24 22 20
27 27 H 1.48503 * 109.47086 * 330.00141 * 24 22 20
28 28 C 1.46847 * 111.00066 * 164.66718 * 14 13 12
29 29 C 1.37996 * 119.94254 * 180.26764 * 2 1 3
30 30 H 1.08997 * 109.47239 * 269.73271 * 1 2 3
31 31 H 1.08995 * 109.47112 * 149.72969 * 1 2 3
32 32 H 1.09001 * 109.47105 * 29.73043 * 1 2 3
33 33 H 1.08001 * 119.87931 * 359.97262 * 3 2 1
34 34 H 1.08002 * 119.94283 * 180.24810 * 4 3 2
35 35 H 1.07990 * 120.06296 * 179.74969 * 5 4 3
36 36 H 1.07995 * 126.01493 * 179.97438 * 11 9 8
37 37 H 1.08997 * 109.47441 * 225.91437 * 13 12 11
38 38 H 1.09009 * 109.47262 * 345.91007 * 13 12 11
39 39 H 1.08999 * 109.46104 * 294.17565 * 15 14 13
40 40 H 1.08997 * 109.46396 * 54.13798 * 15 14 13
41 41 H 1.09008 * 109.49637 * 299.23265 * 16 15 14
42 42 H 1.09000 * 109.50518 * 179.12077 * 16 15 14
43 43 H 1.08998 * 109.52710 * 182.44425 * 17 16 15
44 44 H 1.08993 * 109.52681 * 62.25055 * 17 16 15
45 45 H 0.97000 * 120.00632 * 179.97438 * 23 22 20
46 46 H 1.09000 * 109.46083 * 305.85900 * 28 14 13
47 47 H 1.08996 * 109.46531 * 65.82262 * 28 14 13
48 48 H 1.08004 * 120.05776 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1975 1.1989 0.0000
4 6 3.5804 1.2061 0.0058
5 6 4.2795 0.0157 0.0002
6 6 3.5892 -1.1943 -0.0056
7 6 4.3354 -2.4773 -0.0122
8 7 4.0496 -3.5430 0.7054
9 7 4.9934 -4.5342 0.4078
10 1 5.0247 -5.4242 0.7922
11 6 5.8524 -4.0357 -0.5072
12 6 5.4706 -2.7716 -0.7921
13 6 6.1426 -1.8403 -1.7679
14 7 5.3211 -1.7255 -2.9803
15 6 5.3615 -2.9674 -3.7629
16 6 4.3847 -2.8644 -4.9365
17 6 4.7740 -1.6726 -5.8152
18 6 4.7712 -0.3990 -4.9649
19 1 3.7659 -0.2165 -4.5854
20 6 5.2107 0.7699 -5.8083
21 1 6.0909 1.3327 -5.5345
22 6 4.4891 1.1211 -6.9294
23 7 3.4175 0.4355 -7.2632
24 14 5.0334 2.5706 -7.9745
25 1 5.9675 2.0983 -9.0280
26 1 3.8460 3.1963 -8.6101
27 1 5.7196 3.5696 -7.1163
28 6 5.7369 -0.5736 -3.7906
29 6 2.1958 -1.1958 -0.0056
30 1 -0.3633 -0.0048 1.0276
31 1 -0.3633 -0.8875 -0.5180
32 1 -0.3633 0.8924 -0.5096
33 1 1.6545 2.1325 -0.0004
34 1 4.1145 2.1448 0.0098
35 1 5.3593 0.0225 0.0006
36 1 6.6938 -4.5574 -0.9386
37 1 6.2567 -0.8569 -1.3119
38 1 7.1242 -2.2353 -2.0301
39 1 6.3708 -3.1244 -4.1432
40 1 5.0785 -3.8065 -3.1273
41 1 3.3731 -2.7213 -4.5563
42 1 4.4263 -3.7802 -5.5261
43 1 4.0554 -1.5692 -6.6282
44 1 5.7704 -1.8335 -6.2268
45 1 2.9096 0.6827 -8.0517
46 1 5.7265 0.3260 -3.1751
47 1 6.7445 -0.7416 -4.1708
48 1 1.6558 -2.1311 -0.0095
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597173527.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:17:50
Heat of formation + Delta-G solvation = 72.181768 kcal
Electronic energy + Delta-G solvation = -28028.584872 eV
Core-core repulsion = 24469.317850 eV
Total energy + Delta-G solvation = -3559.267022 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.185 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.20312 -39.88895 -39.58609 -35.74988 -34.35815 -33.60354 -32.95836 -31.73553
-31.04123 -30.59709 -27.72923 -26.84420 -26.71940 -24.49355 -23.55125 -23.02474
-22.47667 -21.49512 -20.26977 -20.19100 -18.67077 -18.24099 -17.36601 -16.73192
-16.40142 -16.15226 -15.96537 -15.59302 -15.29966 -15.18330 -14.86012 -14.61948
-14.44301 -14.36536 -14.09671 -13.95113 -13.76211 -13.49703 -13.23895 -13.02622
-12.86464 -12.81170 -12.72769 -12.49829 -12.39280 -11.96291 -11.92738 -11.77835
-11.65177 -11.54773 -11.32290 -10.84013 -10.68166 -10.60744 -10.32771 -9.63555
-9.52740 -9.17488 -8.90870 -8.02873 -6.16819 0.24618 0.58080 1.05974
1.43338 1.44111 1.54251 1.79416 2.03498 2.46651 2.97890 3.24187
3.33512 3.58849 3.95221 4.06620 4.09090 4.18070 4.28853 4.31327
4.33610 4.42801 4.48544 4.53816 4.65352 4.68263 4.71738 4.80151
4.84982 4.87482 4.89103 4.96880 5.02811 5.05975 5.09134 5.17867
5.23023 5.27263 5.34763 5.43793 5.46724 5.58199 5.65210 5.68193
5.72284 5.77978 6.04585 6.17974 6.20533 6.30055 6.48731 6.51135
6.55683 6.73418 6.97068 7.50998 9.01764
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.010772 B = 0.004369 C = 0.003531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2598.813674 B = 6407.344546 C = 7927.890479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.098 4.098
3 C -0.125 4.125
4 C -0.121 4.121
5 C -0.106 4.106
6 C -0.011 4.011
7 C 0.122 3.878
8 N -0.319 5.319
9 N -0.464 5.464
10 H 0.454 0.546
11 C 0.079 3.921
12 C -0.228 4.228
13 C 0.132 3.868
14 N -0.539 5.539
15 C 0.075 3.925
16 C -0.109 4.109
17 C -0.101 4.101
18 C 0.057 3.943
19 H -0.011 1.011
20 C -0.531 4.531
21 H 0.053 0.947
22 C 0.014 3.986
23 N -0.917 5.917
24 Si 0.951 3.049
25 H -0.276 1.276
26 H -0.286 1.286
27 H -0.267 1.267
28 C 0.087 3.913
29 C -0.113 4.113
30 H 0.084 0.916
31 H 0.063 0.937
32 H 0.074 0.926
33 H 0.140 0.860
34 H 0.142 0.858
35 H 0.129 0.871
36 H 0.215 0.785
37 H 0.076 0.924
38 H 0.052 0.948
39 H 0.031 0.969
40 H 0.076 0.924
41 H 0.038 0.962
42 H 0.064 0.936
43 H 0.053 0.947
44 H 0.025 0.975
45 H 0.258 0.742
46 H 0.054 0.946
47 H 0.018 0.982
48 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.032 -7.541 16.642 18.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.098 4.098
3 C -0.143 4.143
4 C -0.138 4.138
5 C -0.125 4.125
6 C -0.012 4.012
7 C -0.042 4.042
8 N -0.143 5.143
9 N -0.174 5.174
10 H 0.302 0.698
11 C -0.069 4.069
12 C -0.240 4.240
13 C 0.004 3.996
14 N -0.264 5.264
15 C -0.052 4.052
16 C -0.147 4.147
17 C -0.139 4.139
18 C 0.039 3.961
19 H 0.007 0.993
20 C -0.570 4.570
21 H 0.071 0.929
22 C -0.184 4.184
23 N -0.557 5.557
24 Si 0.777 3.223
25 H -0.202 1.202
26 H -0.212 1.212
27 H -0.191 1.191
28 C -0.041 4.041
29 C -0.132 4.132
30 H 0.103 0.897
31 H 0.082 0.918
32 H 0.093 0.907
33 H 0.158 0.842
34 H 0.160 0.840
35 H 0.147 0.853
36 H 0.232 0.768
37 H 0.094 0.906
38 H 0.070 0.930
39 H 0.049 0.951
40 H 0.094 0.906
41 H 0.056 0.944
42 H 0.083 0.917
43 H 0.072 0.928
44 H 0.044 0.956
45 H 0.067 0.933
46 H 0.073 0.927
47 H 0.036 0.964
48 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 1.645 -8.019 17.528 19.345
hybrid contribution 1.292 0.465 -1.659 2.153
sum 2.937 -7.554 15.869 17.819
Atomic orbital electron populations
1.20803 0.89599 1.03194 1.03082 1.20114 0.97431 0.92742 0.99489
1.21366 0.94577 0.98108 1.00282 1.21319 0.94632 0.98382 0.99510
1.21193 1.00168 0.91405 0.99754 1.17846 0.92385 0.89927 1.01090
1.20675 0.95214 0.92828 0.95532 1.77478 1.13986 0.97972 1.24874
1.46149 1.21954 1.14689 1.34590 0.69839 1.22817 0.97034 0.94187
0.92861 1.20067 1.00966 0.97244 1.05697 1.20332 0.93044 0.97942
0.88320 1.61816 1.54754 1.03315 1.06499 1.21891 0.97213 0.92100
0.94034 1.21557 0.98590 0.98080 0.96497 1.21432 0.98736 0.94791
0.98979 1.18521 0.93402 0.92920 0.91302 0.99312 1.21528 1.11202
1.14293 1.09937 0.92906 1.25703 0.94930 0.99031 0.98762 1.70057
1.17995 1.41141 1.26513 0.85661 0.77685 0.79946 0.78982 1.20177
1.21156 1.19123 1.21916 0.96027 0.91902 0.94232 1.21076 0.93190
0.97990 1.00984 0.89735 0.91838 0.90667 0.84177 0.83973 0.85310
0.76846 0.90611 0.92961 0.95066 0.90586 0.94356 0.91690 0.92845
0.95628 0.93263 0.92722 0.96432 0.86820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.43 10.01 71.24 0.71 -1.72 16
2 C -0.10 -2.76 5.88 -19.89 -0.12 -2.88 16
3 C -0.13 -3.37 9.69 22.31 0.22 -3.16 16
4 C -0.12 -3.31 10.03 22.24 0.22 -3.09 16
5 C -0.11 -3.14 8.89 22.48 0.20 -2.94 16
6 C -0.01 -0.34 5.74 -20.04 -0.11 -0.45 16
7 C 0.12 3.72 6.66 42.53 0.28 4.00 16
8 N -0.32 -9.08 12.74 -48.16 -0.61 -9.69 16
9 N -0.46 -9.01 7.35 -57.68 -0.42 -9.44 16
10 H 0.45 5.22 8.96 -213.34 -1.91 3.31 16
11 C 0.08 1.50 11.45 83.47 0.96 2.46 16
12 C -0.23 -6.03 4.76 -19.95 -0.10 -6.12 16
13 C 0.13 3.72 4.96 85.56 0.42 4.15 16
14 N -0.54 -19.39 4.61 -900.94 -4.15 -23.54 16
15 C 0.08 2.54 5.30 86.33 0.46 3.00 16
16 C -0.11 -4.39 6.09 30.64 0.19 -4.20 16
17 C -0.10 -4.96 5.03 30.67 0.15 -4.80 16
18 C 0.06 2.98 2.26 -11.49 -0.03 2.95 16
19 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
20 C -0.53 -29.70 8.56 25.60 0.22 -29.48 16
21 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16
22 C 0.01 0.80 5.30 84.65 0.45 1.25 16
23 N -0.92 -54.38 11.36 21.45 0.24 -54.13 16
24 Si 0.95 44.09 29.54 68.60 2.03 46.12 16
25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16
27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
28 C 0.09 3.67 4.67 86.33 0.40 4.07 16
29 C -0.11 -3.57 9.43 22.48 0.21 -3.36 16
30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
31 H 0.06 1.41 8.08 -2.39 -0.02 1.39 16
32 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16
33 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16
34 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16
35 H 0.13 3.46 6.24 -2.92 -0.02 3.45 16
36 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16
37 H 0.08 2.15 5.52 -2.39 -0.01 2.14 16
38 H 0.05 1.27 8.05 -2.38 -0.02 1.25 16
39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16
40 H 0.08 2.26 6.98 -2.39 -0.02 2.25 16
41 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16
42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
43 H 0.05 2.98 6.16 -2.39 -0.01 2.97 16
44 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16
45 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16
46 H 0.05 2.31 7.96 -2.39 -0.02 2.29 16
47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
48 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16
Total: -1.00 -70.51 382.96 0.87 -69.63
By element:
Atomic # 1 Polarization: 22.33 SS G_CDS: -0.95 Total: 21.37 kcal
Atomic # 6 Polarization: -45.07 SS G_CDS: 4.74 Total: -40.32 kcal
Atomic # 7 Polarization: -91.86 SS G_CDS: -4.94 Total: -96.80 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -70.51 0.87 -69.63 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597173527.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.816 kcal
(2) G-P(sol) polarization free energy of solvation -70.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.308 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds