Wall clock time and date at job start Tue Mar 31 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30517 * 125.71337 * 2 1 4 4 C 1.34131 * 109.34445 * 179.71216 * 3 2 1 5 5 C 1.34653 * 108.19766 * 0.43414 * 4 3 2 6 6 C 1.50701 * 126.57917 * 179.83624 * 5 4 3 7 7 N 1.46896 * 109.47043 * 94.69646 * 6 5 4 8 8 C 1.46850 * 111.00472 * 66.04154 * 7 6 5 9 9 C 1.53036 * 109.52384 * 185.84130 * 8 7 6 10 10 C 1.53114 * 109.27799 * 300.81924 * 9 8 7 11 11 C 1.53120 * 109.16161 * 57.65854 * 10 9 8 12 12 H 1.08998 * 109.50493 * 62.28140 * 11 10 9 13 13 C 1.50699 * 109.50204 * 182.40736 * 11 10 9 14 14 H 1.08000 * 120.00193 * 120.00336 * 13 11 10 15 15 C 1.37879 * 119.99808 * 299.99151 * 13 11 10 16 16 N 1.31509 * 119.99991 * 180.02562 * 15 13 11 17 17 Si 1.86806 * 119.99955 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.46974 * 89.99636 * 17 15 13 19 19 H 1.48498 * 109.46881 * 209.99563 * 17 15 13 20 20 H 1.48502 * 109.46801 * 329.99581 * 17 15 13 21 21 C 1.46846 * 110.99998 * 190.25565 * 7 6 5 22 22 N 1.35830 * 125.71613 * 179.97438 * 2 1 3 23 23 C 1.40233 * 126.47268 * 0.02562 * 22 2 1 24 24 C 1.38819 * 120.06126 * 114.73023 * 23 22 2 25 25 C 1.38128 * 119.93009 * 179.76994 * 24 23 22 26 26 C 1.38274 * 120.06762 * 0.50288 * 25 24 23 27 27 C 1.38277 * 120.12958 * 359.74633 * 26 25 24 28 28 C 1.38123 * 120.06505 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47040 * 270.02263 * 1 2 3 30 30 H 1.09006 * 109.46806 * 30.02356 * 1 2 3 31 31 H 1.09003 * 109.47176 * 150.01823 * 1 2 3 32 32 H 1.08007 * 125.89588 * 180.27697 * 4 3 2 33 33 H 1.08999 * 109.47078 * 334.68893 * 6 5 4 34 34 H 1.09003 * 109.46796 * 214.69260 * 6 5 4 35 35 H 1.08995 * 109.45831 * 65.81919 * 8 7 6 36 36 H 1.08998 * 109.45719 * 305.85769 * 8 7 6 37 37 H 1.09004 * 109.50109 * 60.76189 * 9 8 7 38 38 H 1.08997 * 109.49831 * 180.87683 * 9 8 7 39 39 H 1.08995 * 109.52025 * 177.56309 * 10 9 8 40 40 H 1.09001 * 109.52508 * 297.68584 * 10 9 8 41 41 H 0.97005 * 120.00033 * 180.02562 * 16 15 13 42 42 H 1.08993 * 109.46639 * 54.13954 * 21 7 6 43 43 H 1.09010 * 109.45973 * 294.17120 * 21 7 6 44 44 H 1.07991 * 120.03607 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.96721 * 180.25162 * 25 24 23 46 46 H 1.07999 * 119.93954 * 179.76904 * 26 25 24 47 47 H 1.07996 * 119.97046 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.03517 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2689 1.0597 0.0000 4 6 3.5558 0.6817 0.0064 5 6 3.5989 -0.6641 0.0008 6 6 4.8371 -1.5231 0.0013 7 7 5.1701 -1.9012 1.3811 8 6 4.1376 -2.7763 1.9509 9 6 4.4416 -3.0307 3.4291 10 6 5.8195 -3.6860 3.5563 11 6 6.8699 -2.7768 2.9125 12 1 6.9039 -1.8263 3.4448 13 6 8.2206 -3.4415 2.9809 14 1 8.7603 -3.6626 2.0719 15 6 8.7675 -3.7672 4.2039 16 7 9.9465 -4.3468 4.2637 17 14 7.8338 -3.3851 5.7761 18 1 6.9716 -4.5403 6.1329 19 1 8.7990 -3.1296 6.8753 20 1 6.9886 -2.1816 5.5697 21 6 6.4956 -2.5297 1.4492 22 7 2.3000 -1.1028 0.0005 23 6 1.8710 -2.4379 0.0006 24 6 2.1373 -3.2539 -1.0904 25 6 1.7177 -4.5699 -1.0855 26 6 1.0240 -5.0718 0.0003 27 6 0.7529 -4.2599 1.0863 28 6 1.1740 -2.9445 1.0891 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5136 32 1 4.4100 1.3427 0.0121 33 1 5.6666 -0.9650 -0.4329 34 1 4.6559 -2.4219 -0.5881 35 1 4.1283 -3.7245 1.4135 36 1 3.1633 -2.2966 1.8578 37 1 4.4374 -2.0841 3.9696 38 1 3.6836 -3.6927 3.8476 39 1 6.0586 -3.8296 4.6100 40 1 5.8121 -4.6512 3.0498 41 1 10.3311 -4.5763 5.1241 42 1 7.2338 -1.8711 0.9918 43 1 6.4752 -3.4792 0.9142 44 1 2.6755 -2.8614 -1.9404 45 1 1.9280 -5.2064 -1.9322 46 1 0.6937 -6.1000 0.0004 47 1 0.2113 -4.6547 1.9331 48 1 0.9624 -2.3109 1.9377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:15 Heat of formation + Delta-G solvation = 80.674338 kcal Electronic energy + Delta-G solvation = -28557.666958 eV Core-core repulsion = 24998.768202 eV Total energy + Delta-G solvation = -3558.898756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.46013 -40.16373 -39.82665 -35.95781 -35.01333 -34.23147 -32.63465 -32.20383 -31.85156 -30.42632 -29.27813 -26.90166 -26.19911 -24.19525 -23.91192 -23.70030 -23.14422 -21.44462 -20.81987 -20.54714 -18.89860 -18.48508 -17.53725 -17.28991 -16.86985 -16.12624 -15.97770 -15.75575 -15.50385 -15.41248 -15.20972 -14.87456 -14.68532 -14.65126 -14.49322 -14.15184 -13.93206 -13.82487 -13.64673 -13.42185 -13.24117 -13.03184 -12.88325 -12.68719 -12.51689 -12.31510 -12.25837 -11.95041 -11.81711 -11.50389 -11.17615 -11.04068 -10.94793 -10.84246 -10.64307 -10.02868 -9.75240 -9.37377 -9.16632 -8.31317 -6.34471 0.00717 0.28833 0.93398 1.27556 1.35253 1.45772 1.67859 2.05022 2.31423 2.63261 3.04342 3.05442 3.51465 3.59913 3.84074 3.85566 3.88718 3.94777 4.04908 4.16481 4.19231 4.30894 4.36977 4.38110 4.38900 4.49010 4.53365 4.58847 4.66212 4.68600 4.70504 4.72444 4.84973 4.91126 4.94715 4.96579 5.01048 5.06415 5.12719 5.20428 5.33330 5.38930 5.39739 5.46374 5.60182 5.68346 5.70713 5.82039 6.09471 6.12715 6.31885 6.36495 6.72312 7.02865 7.31264 8.85407 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.003978 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.889731 B = 7036.476885 C = 7764.139856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.209 3.791 3 N -0.517 5.517 4 C -0.023 4.023 5 C -0.010 4.010 6 C 0.134 3.866 7 N -0.542 5.542 8 C 0.068 3.932 9 C -0.113 4.113 10 C -0.118 4.118 11 C 0.021 3.979 12 H 0.022 0.978 13 C -0.517 4.517 14 H 0.036 0.964 15 C 0.017 3.983 16 N -0.948 5.948 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.253 1.253 21 C 0.090 3.910 22 N -0.413 5.413 23 C 0.097 3.903 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.107 4.107 27 C -0.103 4.103 28 C -0.114 4.114 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.024 0.976 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.122 0.878 45 H 0.151 0.849 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.356 0.660 -10.146 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.052 4.052 3 N -0.236 5.236 4 C -0.170 4.170 5 C -0.122 4.122 6 C 0.006 3.994 7 N -0.266 5.266 8 C -0.059 4.059 9 C -0.151 4.151 10 C -0.156 4.156 11 C 0.002 3.998 12 H 0.040 0.960 13 C -0.556 4.556 14 H 0.055 0.945 15 C -0.180 4.180 16 N -0.589 5.589 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.227 1.227 20 H -0.177 1.177 21 C -0.037 4.037 22 N -0.095 5.095 23 C 0.008 3.992 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.133 4.133 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.123 0.877 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.140 0.860 45 H 0.169 0.831 46 H 0.174 0.826 47 H 0.174 0.826 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.505 1.730 -9.781 27.371 hybrid contribution 1.072 -1.348 0.329 1.753 sum -24.433 0.382 -9.452 26.200 Atomic orbital electron populations 1.20315 0.82355 1.04821 1.04611 1.24204 0.96858 0.80272 1.03875 1.70234 1.02671 1.29073 1.21657 1.22259 0.94893 0.92414 1.07477 1.21150 0.84922 0.95234 1.10911 1.20419 0.92861 0.96679 0.89487 1.61975 1.02544 1.43602 1.18523 1.22187 0.95077 0.93965 0.94718 1.21610 0.96668 1.00496 0.96301 1.21887 0.95425 0.99291 0.98978 1.19053 0.92419 0.94815 0.93497 0.95950 1.21291 1.02543 1.38646 0.93092 0.94535 1.25772 0.95451 0.94364 1.02431 1.70034 1.18641 1.43765 1.26425 0.85854 0.77916 0.79973 0.78749 1.19164 1.22674 1.17708 1.21802 0.88721 0.95907 0.97288 1.42980 1.05830 1.05265 1.55397 1.17795 1.02378 0.82398 0.96641 1.21273 1.00869 0.95070 0.96960 1.21379 0.97242 0.93997 0.99990 1.21683 0.96669 1.01326 0.92759 1.21404 0.99025 0.92102 0.99615 1.21266 0.98453 0.97194 0.96368 0.88872 0.88407 0.89668 0.80521 0.87677 0.94022 0.95826 0.89943 0.92547 0.90073 0.94660 0.93106 0.92538 0.91503 0.96185 0.85994 0.83147 0.82639 0.82628 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.06 71.24 0.72 -0.27 16 2 C 0.21 5.20 7.86 137.87 1.08 6.29 16 3 N -0.52 -15.51 11.25 -187.56 -2.11 -17.62 16 4 C -0.02 -0.69 11.78 83.52 0.98 0.29 16 5 C -0.01 -0.27 5.68 40.91 0.23 -0.04 16 6 C 0.13 3.85 5.23 85.56 0.45 4.29 16 7 N -0.54 -18.58 4.65 -900.93 -4.19 -22.76 16 8 C 0.07 2.15 4.28 86.32 0.37 2.51 16 9 C -0.11 -3.85 6.09 30.64 0.19 -3.66 16 10 C -0.12 -5.00 4.73 30.67 0.15 -4.86 16 11 C 0.02 1.01 1.85 -11.49 -0.02 0.99 16 12 H 0.02 1.12 7.21 -2.39 -0.02 1.10 16 13 C -0.52 -29.66 9.15 25.60 0.23 -29.43 16 14 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 15 C 0.02 1.00 5.45 84.66 0.46 1.46 16 16 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 17 Si 0.95 46.01 24.35 68.60 1.67 47.68 16 18 H -0.27 -12.17 6.89 99.48 0.69 -11.49 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 20 H -0.25 -11.74 6.53 99.48 0.65 -11.09 16 21 C 0.09 3.63 4.68 86.33 0.40 4.03 16 22 N -0.41 -10.26 2.45 -323.75 -0.79 -11.05 16 23 C 0.10 2.02 3.31 38.08 0.13 2.14 16 24 C -0.12 -2.29 9.07 22.38 0.20 -2.08 16 25 C -0.11 -1.52 10.04 22.25 0.22 -1.30 16 26 C -0.11 -1.28 10.04 22.29 0.22 -1.06 16 27 C -0.10 -1.35 10.04 22.25 0.22 -1.13 16 28 C -0.11 -1.99 7.76 22.38 0.17 -1.81 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.18 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.11 2.82 7.98 -2.39 -0.02 2.80 16 34 H 0.04 1.15 7.21 -2.39 -0.02 1.14 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 2.38 3.57 -2.39 -0.01 2.37 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.56 3.34 -2.39 -0.01 1.56 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 42 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 43 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.12 2.32 8.06 -2.92 -0.02 2.29 16 45 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 46 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 48 H 0.13 2.22 8.02 -2.91 -0.02 2.20 16 Total: -1.00 -71.85 371.05 2.16 -69.68 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.86 Total: 17.00 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 6.42 Total: -23.62 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -6.79 Total: -110.74 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -71.85 2.16 -69.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.359 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds