Wall clock time and date at job start Tue Mar 31 2020 14:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35805 * 116.99813 * 2 1 4 4 C 1.36662 * 120.22974 * 0.02562 * 3 2 1 5 5 C 1.39191 * 120.92499 * 179.97438 * 4 3 2 6 6 C 1.36178 * 121.06049 * 0.02739 * 5 4 3 7 7 C 1.50694 * 120.11706 * 180.02562 * 6 5 4 8 8 N 1.46907 * 109.46804 * 259.94824 * 7 6 5 9 9 C 1.46843 * 111.00219 * 45.79257 * 8 7 6 10 10 C 1.53030 * 109.52459 * 185.83697 * 9 8 7 11 11 C 1.53118 * 109.27990 * 300.82008 * 10 9 8 12 12 C 1.53112 * 109.16117 * 57.65307 * 11 10 9 13 13 H 1.09002 * 109.53309 * 62.30793 * 12 11 10 14 14 C 1.50700 * 109.50569 * 182.40373 * 12 11 10 15 15 H 1.08003 * 120.00246 * 119.80237 * 14 12 11 16 16 C 1.37874 * 119.99999 * 299.80774 * 14 12 11 17 17 N 1.31515 * 120.00161 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99922 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46774 * 90.00075 * 18 16 14 20 20 H 1.48502 * 109.47196 * 209.99803 * 18 16 14 21 21 H 1.48499 * 109.47083 * 330.00005 * 18 16 14 22 22 C 1.46847 * 110.99810 * 169.99995 * 8 7 6 23 23 C 1.40520 * 119.76656 * 359.95421 * 6 5 4 24 24 C 1.40551 * 121.27293 * 180.02562 * 23 6 5 25 25 C 1.36104 * 119.65261 * 180.02562 * 24 23 6 26 26 C 1.39352 * 120.97610 * 0.27983 * 25 24 23 27 27 C 1.36141 * 120.97935 * 359.45276 * 26 25 24 28 28 C 1.40420 * 119.65957 * 0.51809 * 27 26 25 29 29 H 1.09003 * 109.46913 * 299.99824 * 1 2 3 30 30 H 1.09002 * 109.47425 * 59.99955 * 1 2 3 31 31 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.54125 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.47402 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47549 * 19.94701 * 7 6 5 35 35 H 1.09004 * 109.47390 * 139.95411 * 7 6 5 36 36 H 1.09002 * 109.46054 * 305.85948 * 9 8 7 37 37 H 1.09005 * 109.45918 * 65.81935 * 9 8 7 38 38 H 1.09001 * 109.50261 * 180.88065 * 10 9 8 39 39 H 1.08998 * 109.50589 * 60.76651 * 10 9 8 40 40 H 1.09008 * 109.52140 * 297.74717 * 11 10 9 41 41 H 1.08999 * 109.52061 * 177.56245 * 11 10 9 42 42 H 0.97000 * 119.99788 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46781 * 294.17897 * 22 8 7 44 44 H 1.09004 * 109.46284 * 54.14618 * 22 8 7 45 45 H 1.08002 * 120.17437 * 0.02562 * 24 23 6 46 46 H 1.08002 * 119.50866 * 179.97438 * 25 24 23 47 47 H 1.08006 * 119.51278 * 179.71945 * 26 25 24 48 48 H 1.07998 * 120.16958 * 180.26063 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3058 2.3591 0.0005 5 6 1.9225 3.6069 0.0011 6 6 3.2796 3.7199 0.0005 7 6 3.9250 5.0816 0.0017 8 7 4.3525 5.4220 -1.3619 9 6 3.2953 5.1207 -2.3355 10 6 3.8250 5.3496 -3.7529 11 6 4.2756 6.8061 -3.8951 12 6 5.3419 7.1077 -2.8385 13 1 6.2122 6.4736 -3.0076 14 6 5.7485 8.5557 -2.9330 15 1 5.6116 9.2115 -2.0859 16 6 6.2952 9.0434 -4.1010 17 7 6.4623 8.2448 -5.1325 18 14 6.7986 10.8385 -4.2184 19 1 8.2121 10.9853 -3.7877 20 1 6.6584 11.3011 -5.6226 21 1 5.9254 11.6560 -3.3384 22 6 4.7682 6.8278 -1.4476 23 6 4.0760 2.5622 0.0004 24 6 5.4793 2.6419 0.0004 25 6 6.2186 1.4992 -0.0003 26 6 5.6051 0.2480 -0.0068 27 6 4.2486 0.1326 -0.0015 28 6 3.4529 1.2895 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2275 2.2983 0.0014 33 1 1.3151 4.5000 0.0019 34 1 3.2079 5.8234 0.3535 35 1 4.7919 5.0723 0.6625 36 1 2.9868 4.0810 -2.2265 37 1 2.4408 5.7735 -2.1573 38 1 3.0353 5.1409 -4.4746 39 1 4.6709 4.6873 -3.9367 40 1 3.4214 7.4675 -3.7499 41 1 4.6937 6.9625 -4.8895 42 1 6.8472 8.5878 -5.9541 43 1 3.9068 7.4726 -1.2736 44 1 5.5297 7.0280 -0.6937 45 1 5.9683 3.6048 0.0009 46 1 7.2967 1.5631 -0.0007 47 1 6.2148 -0.6435 -0.0118 48 1 3.7869 -0.8437 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597174445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:37 Heat of formation + Delta-G solvation = 4.165334 kcal Electronic energy + Delta-G solvation = -27750.012490 eV Core-core repulsion = 24155.503303 eV Total energy + Delta-G solvation = -3594.509187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91666 -38.88497 -38.06121 -36.12501 -33.88866 -32.42289 -31.26766 -30.42899 -29.89155 -28.91659 -27.68062 -25.47346 -24.85946 -23.20789 -22.96550 -22.03093 -21.47034 -20.10098 -18.58502 -18.11187 -17.46523 -16.88923 -16.37591 -15.96443 -15.24410 -15.12380 -15.00265 -14.48934 -14.39289 -14.05691 -13.52240 -13.42993 -13.30037 -13.25332 -13.03973 -12.82537 -12.48390 -12.20849 -11.94380 -11.78953 -11.71832 -11.65457 -11.38967 -10.97336 -10.92065 -10.79977 -10.75478 -10.57861 -10.51308 -10.03388 -9.79168 -9.43001 -9.38920 -9.00061 -8.66648 -8.62197 -8.27435 -7.70033 -7.38413 -5.94803 -4.00966 0.64694 1.02420 2.11647 3.02496 3.03550 3.32186 3.38961 3.41722 4.11277 4.44118 4.64299 4.66909 4.74836 4.82421 4.88491 4.90804 5.04419 5.17231 5.17998 5.23994 5.35256 5.42060 5.48474 5.57196 5.64303 5.76455 5.88618 5.92016 5.98591 6.12743 6.15277 6.17381 6.27663 6.32404 6.41320 6.47043 6.52743 6.55816 6.66300 6.78321 6.79448 6.82743 7.00982 7.03213 7.25348 7.27079 7.43854 7.71674 7.78042 7.85150 8.11924 8.21139 8.51139 9.03249 9.63185 11.11110 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003008 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.245396 B = 9304.988841 C = 9894.370174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.134 3.866 4 C -0.216 4.216 5 C -0.081 4.081 6 C -0.089 4.089 7 C 0.093 3.907 8 N -0.529 5.529 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.067 3.933 23 C -0.004 4.004 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.125 4.125 27 C -0.096 4.096 28 C -0.068 4.068 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.259 0.741 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.140 0.860 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 -16.534 11.323 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.089 3.911 4 C -0.235 4.235 5 C -0.100 4.100 6 C -0.089 4.089 7 C -0.034 4.034 8 N -0.254 5.254 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.038 3.962 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.060 4.060 23 C -0.005 4.005 24 C -0.108 4.108 25 C -0.132 4.132 26 C -0.143 4.143 27 C -0.114 4.114 28 C -0.069 4.069 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.157 0.843 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.995 -17.001 11.020 22.167 hybrid contribution -0.840 1.653 -0.014 1.854 sum -9.835 -15.348 11.007 21.294 Atomic orbital electron populations 1.23056 0.78380 1.03803 1.01502 1.85988 1.21291 1.27027 1.88483 1.18627 0.91290 0.84298 0.96897 1.20738 0.99832 0.92177 1.10735 1.20447 0.94120 0.96737 0.98682 1.19591 0.93089 0.94591 1.01660 1.21041 0.98477 0.91242 0.92677 1.62175 1.37578 1.23529 1.02111 1.22062 0.91932 0.99092 0.93373 1.21667 0.99584 1.00462 0.93744 1.21644 0.97919 0.90994 1.04220 1.18644 0.94040 0.95856 0.87696 0.94751 1.21149 1.40679 0.94974 0.98507 0.92892 1.24931 0.95660 0.97390 0.95851 1.69897 1.44645 1.34823 1.03290 0.86644 0.78912 0.85562 0.77144 1.20723 1.21313 1.20053 1.22339 0.97865 0.84229 1.01541 1.17689 0.93714 0.90920 0.98164 1.21192 0.92200 0.99521 0.97901 1.20920 1.00224 0.92395 0.99693 1.20820 0.94660 0.97664 1.01164 1.20847 0.93685 0.97417 0.99414 1.17421 0.89862 0.93932 1.05642 0.92643 0.92520 0.88295 0.85739 0.86129 0.94529 0.90171 0.92017 0.96225 0.93786 0.92195 0.95282 0.89225 0.93093 0.96291 0.92249 0.84257 0.85941 0.86218 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.55 9.72 -19.13 -0.19 -3.74 16 3 C 0.13 1.73 6.67 -39.12 -0.26 1.47 16 4 C -0.22 -2.59 8.98 -39.80 -0.36 -2.95 16 5 C -0.08 -1.06 8.52 -39.97 -0.34 -1.40 16 6 C -0.09 -1.28 3.71 -104.51 -0.39 -1.67 16 7 C 0.09 1.42 4.66 -4.98 -0.02 1.39 16 8 N -0.53 -9.70 4.80 -236.11 -1.13 -10.84 16 9 C 0.06 1.16 4.80 -3.84 -0.02 1.14 16 10 C -0.12 -2.37 6.09 -26.66 -0.16 -2.53 16 11 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 12 C 0.06 1.41 2.26 -91.70 -0.21 1.20 16 13 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.51 -14.06 8.56 -34.44 -0.29 -14.36 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.42 11.36 55.43 0.63 -24.79 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.07 1.41 4.65 -3.83 -0.02 1.39 16 23 C 0.00 -0.07 5.74 -106.84 -0.61 -0.68 16 24 C -0.09 -1.27 9.29 -39.48 -0.37 -1.63 16 25 C -0.11 -1.40 9.95 -39.93 -0.40 -1.80 16 26 C -0.13 -1.44 9.95 -39.92 -0.40 -1.84 16 27 C -0.10 -1.19 9.56 -39.51 -0.38 -1.57 16 28 C -0.07 -0.95 5.75 -106.72 -0.61 -1.57 16 29 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.18 6.21 -52.49 -0.33 0.85 16 33 H 0.12 1.42 8.00 -52.48 -0.42 1.00 16 34 H 0.04 0.54 7.91 -51.93 -0.41 0.13 16 35 H 0.08 1.15 6.99 -51.93 -0.36 0.79 16 36 H 0.06 1.08 6.02 -51.93 -0.31 0.77 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 45 H 0.14 1.98 6.60 -52.49 -0.35 1.64 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 48 H 0.13 1.39 7.62 -52.49 -0.40 0.99 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -29.77 374.14 -11.61 -41.38 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.46 Total: 1.41 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -4.07 Total: -25.32 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.50 Total: -35.63 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.19 Total: -3.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.77 -11.61 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597174445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds