Wall clock time and date at job start Tue Mar 31 2020 14:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35805 * 116.99813 * 2 1 4 4 C 1.36662 * 120.22974 * 0.02562 * 3 2 1 5 5 C 1.39191 * 120.92499 * 179.97438 * 4 3 2 6 6 C 1.36178 * 121.06049 * 0.02739 * 5 4 3 7 7 C 1.50694 * 120.11706 * 180.02562 * 6 5 4 8 8 N 1.46907 * 109.46804 * 259.94824 * 7 6 5 9 9 C 1.46843 * 111.00219 * 45.79257 * 8 7 6 10 10 C 1.53030 * 109.52459 * 185.83697 * 9 8 7 11 11 C 1.53118 * 109.27990 * 300.82008 * 10 9 8 12 12 C 1.53112 * 109.16117 * 57.65307 * 11 10 9 13 13 H 1.09002 * 109.53309 * 62.30793 * 12 11 10 14 14 C 1.50700 * 109.50569 * 182.40373 * 12 11 10 15 15 H 1.08003 * 120.00246 * 119.80237 * 14 12 11 16 16 C 1.37874 * 119.99999 * 299.80774 * 14 12 11 17 17 N 1.31515 * 120.00161 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99922 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46774 * 90.00075 * 18 16 14 20 20 H 1.48502 * 109.47196 * 209.99803 * 18 16 14 21 21 H 1.48499 * 109.47083 * 330.00005 * 18 16 14 22 22 C 1.46847 * 110.99810 * 169.99995 * 8 7 6 23 23 C 1.40520 * 119.76656 * 359.95421 * 6 5 4 24 24 C 1.40551 * 121.27293 * 180.02562 * 23 6 5 25 25 C 1.36104 * 119.65261 * 180.02562 * 24 23 6 26 26 C 1.39352 * 120.97610 * 0.27983 * 25 24 23 27 27 C 1.36141 * 120.97935 * 359.45276 * 26 25 24 28 28 C 1.40420 * 119.65957 * 0.51809 * 27 26 25 29 29 H 1.09003 * 109.46913 * 299.99824 * 1 2 3 30 30 H 1.09002 * 109.47425 * 59.99955 * 1 2 3 31 31 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.54125 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.47402 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47549 * 19.94701 * 7 6 5 35 35 H 1.09004 * 109.47390 * 139.95411 * 7 6 5 36 36 H 1.09002 * 109.46054 * 305.85948 * 9 8 7 37 37 H 1.09005 * 109.45918 * 65.81935 * 9 8 7 38 38 H 1.09001 * 109.50261 * 180.88065 * 10 9 8 39 39 H 1.08998 * 109.50589 * 60.76651 * 10 9 8 40 40 H 1.09008 * 109.52140 * 297.74717 * 11 10 9 41 41 H 1.08999 * 109.52061 * 177.56245 * 11 10 9 42 42 H 0.97000 * 119.99788 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46781 * 294.17897 * 22 8 7 44 44 H 1.09004 * 109.46284 * 54.14618 * 22 8 7 45 45 H 1.08002 * 120.17437 * 0.02562 * 24 23 6 46 46 H 1.08002 * 119.50866 * 179.97438 * 25 24 23 47 47 H 1.08006 * 119.51278 * 179.71945 * 26 25 24 48 48 H 1.07998 * 120.16958 * 180.26063 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3058 2.3591 0.0005 5 6 1.9225 3.6069 0.0011 6 6 3.2796 3.7199 0.0005 7 6 3.9250 5.0816 0.0017 8 7 4.3525 5.4220 -1.3619 9 6 3.2953 5.1207 -2.3355 10 6 3.8250 5.3496 -3.7529 11 6 4.2756 6.8061 -3.8951 12 6 5.3419 7.1077 -2.8385 13 1 6.2122 6.4736 -3.0076 14 6 5.7485 8.5557 -2.9330 15 1 5.6116 9.2115 -2.0859 16 6 6.2952 9.0434 -4.1010 17 7 6.4623 8.2448 -5.1325 18 14 6.7986 10.8385 -4.2184 19 1 8.2121 10.9853 -3.7877 20 1 6.6584 11.3011 -5.6226 21 1 5.9254 11.6560 -3.3384 22 6 4.7682 6.8278 -1.4476 23 6 4.0760 2.5622 0.0004 24 6 5.4793 2.6419 0.0004 25 6 6.2186 1.4992 -0.0003 26 6 5.6051 0.2480 -0.0068 27 6 4.2486 0.1326 -0.0015 28 6 3.4529 1.2895 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2275 2.2983 0.0014 33 1 1.3151 4.5000 0.0019 34 1 3.2079 5.8234 0.3535 35 1 4.7919 5.0723 0.6625 36 1 2.9868 4.0810 -2.2265 37 1 2.4408 5.7735 -2.1573 38 1 3.0353 5.1409 -4.4746 39 1 4.6709 4.6873 -3.9367 40 1 3.4214 7.4675 -3.7499 41 1 4.6937 6.9625 -4.8895 42 1 6.8472 8.5878 -5.9541 43 1 3.9068 7.4726 -1.2736 44 1 5.5297 7.0280 -0.6937 45 1 5.9683 3.6048 0.0009 46 1 7.2967 1.5631 -0.0007 47 1 6.2148 -0.6435 -0.0118 48 1 3.7869 -0.8437 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597174445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:36 Heat of formation + Delta-G solvation = -10.959543 kcal Electronic energy + Delta-G solvation = -27750.668354 eV Core-core repulsion = 24155.503303 eV Total energy + Delta-G solvation = -3595.165050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87045 -40.01563 -39.30547 -37.24249 -35.50455 -33.96262 -32.61640 -31.66463 -31.36990 -30.05493 -28.39216 -26.92048 -26.64268 -24.19797 -23.90230 -23.58116 -23.12092 -21.25121 -20.33131 -19.01156 -18.47247 -18.31014 -17.81725 -16.90091 -16.69237 -16.35843 -16.13662 -15.92221 -15.64167 -15.13836 -14.91889 -14.80230 -14.62411 -14.45180 -14.18271 -14.10946 -13.84070 -13.76309 -13.29328 -12.94497 -12.87220 -12.74962 -12.63137 -12.57783 -12.52404 -12.44557 -11.99915 -11.77842 -11.67393 -11.63945 -11.55620 -11.35736 -10.85645 -10.64456 -10.36895 -10.33788 -9.58316 -9.12113 -8.40753 -8.06251 -6.20367 -0.32684 0.06280 1.12236 1.42176 1.42584 1.52694 2.07610 2.27766 2.44063 3.04067 3.20788 3.34869 3.67701 3.82825 3.87827 4.10782 4.15651 4.20373 4.21842 4.25793 4.40668 4.41373 4.44449 4.45763 4.57340 4.58283 4.63132 4.65375 4.75277 4.77584 4.80003 4.89904 4.97735 5.01319 5.11383 5.17263 5.19914 5.21194 5.32838 5.38837 5.47034 5.53773 5.58237 5.64978 5.70153 5.82747 5.98498 6.08765 6.14163 6.22860 6.35189 6.41814 6.48270 6.92681 7.47484 8.98419 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003008 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.245396 B = 9304.988841 C = 9894.370174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.135 3.865 4 C -0.220 4.220 5 C -0.077 4.077 6 C -0.110 4.110 7 C 0.099 3.901 8 N -0.536 5.536 9 C 0.074 3.926 10 C -0.110 4.110 11 C -0.101 4.101 12 C 0.055 3.945 13 H -0.004 1.004 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.082 3.918 23 C -0.018 4.018 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.126 4.126 27 C -0.101 4.101 28 C -0.091 4.091 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 -17.596 12.342 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.089 3.911 4 C -0.239 4.239 5 C -0.096 4.096 6 C -0.111 4.111 7 C -0.028 4.028 8 N -0.261 5.261 9 C -0.054 4.054 10 C -0.148 4.148 11 C -0.140 4.140 12 C 0.036 3.964 13 H 0.014 0.986 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.046 4.046 23 C -0.019 4.019 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.144 4.144 27 C -0.118 4.118 28 C -0.092 4.092 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.146 0.854 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.492 -18.075 12.057 24.128 hybrid contribution -0.408 1.853 -0.314 1.923 sum -10.900 -16.222 11.744 22.800 Atomic orbital electron populations 1.23383 0.76205 1.05734 1.02342 1.85978 1.23513 1.26294 1.88101 1.18741 0.91153 0.85210 0.96045 1.20983 1.01182 0.91409 1.10277 1.20658 0.93686 0.97788 0.97437 1.19501 0.93739 0.93800 1.04035 1.20996 0.98970 0.92243 0.90550 1.62058 1.38420 1.21445 1.04175 1.21941 0.91747 0.99926 0.91769 1.21575 0.99702 0.97407 0.96093 1.21444 0.97110 0.93407 1.01993 1.18553 0.93161 0.94133 0.90503 0.98562 1.21523 1.40894 0.96241 0.98620 0.92922 1.25723 0.95701 1.01564 0.95542 1.70047 1.45207 1.36604 1.03686 0.85626 0.78672 0.80567 0.77188 1.20174 1.21005 1.19259 1.22006 0.97637 0.86018 0.98924 1.17832 0.93973 0.91471 0.98579 1.21214 0.92496 0.99739 0.99791 1.21208 1.01184 0.92327 0.98430 1.21135 0.94753 0.98316 1.00189 1.21095 0.94121 0.97629 0.98990 1.17695 0.90938 0.94138 1.06408 0.91512 0.91865 0.85983 0.83111 0.84886 0.93729 0.89844 0.90702 0.95616 0.91774 0.93649 0.95820 0.92511 0.93137 0.96449 0.92133 0.85403 0.84204 0.83373 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.59 9.72 -91.36 -0.89 -7.48 16 3 C 0.13 3.22 6.67 22.57 0.15 3.37 16 4 C -0.22 -4.76 8.98 22.13 0.20 -4.56 16 5 C -0.08 -1.86 8.52 22.02 0.19 -1.67 16 6 C -0.11 -3.08 3.71 -19.79 -0.07 -3.15 16 7 C 0.10 2.97 4.66 85.55 0.40 3.37 16 8 N -0.54 -19.67 4.80 -900.93 -4.32 -23.99 16 9 C 0.07 2.64 4.80 86.32 0.41 3.06 16 10 C -0.11 -4.49 6.09 30.64 0.19 -4.30 16 11 C -0.10 -4.99 5.03 30.67 0.15 -4.83 16 12 C 0.06 2.86 2.26 -11.49 -0.03 2.83 16 13 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 14 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.75 5.30 84.65 0.45 1.20 16 17 N -0.92 -53.95 11.36 21.45 0.24 -53.71 16 18 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.08 3.47 4.65 86.33 0.40 3.87 16 23 C -0.02 -0.52 5.74 -21.30 -0.12 -0.65 16 24 C -0.11 -3.23 9.29 22.34 0.21 -3.02 16 25 C -0.11 -2.70 9.95 22.04 0.22 -2.49 16 26 C -0.13 -2.69 9.95 22.05 0.22 -2.47 16 27 C -0.10 -2.36 9.56 22.31 0.21 -2.14 16 28 C -0.09 -2.46 5.75 -21.23 -0.12 -2.58 16 29 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 30 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.15 2.35 6.21 -2.91 -0.02 2.33 16 33 H 0.13 2.82 8.00 -2.91 -0.02 2.79 16 34 H 0.04 1.26 7.91 -2.39 -0.02 1.24 16 35 H 0.08 2.41 6.99 -2.39 -0.02 2.39 16 36 H 0.07 2.53 6.02 -2.39 -0.01 2.51 16 37 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.06 3.16 6.17 -2.39 -0.01 3.15 16 42 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 2.52 8.12 -2.38 -0.02 2.50 16 45 H 0.13 3.78 6.60 -2.91 -0.02 3.76 16 46 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 48 H 0.14 2.80 7.62 -2.91 -0.02 2.77 16 Total: -1.00 -65.47 374.14 2.39 -63.08 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.94 Total: 18.49 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 4.39 Total: -42.51 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.08 Total: -77.70 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.89 Total: -7.48 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.47 2.39 -63.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597174445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.121 kcal (2) G-P(sol) polarization free energy of solvation -65.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds