Wall clock time and date at job start Tue Mar 31 2020 16:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38326 * 119.88002 * 2 1 4 4 C 1.38013 * 120.12129 * 179.97438 * 3 2 1 5 5 C 1.39323 * 119.87956 * 359.97438 * 4 3 2 6 6 C 1.48425 * 120.11998 * 179.97438 * 5 4 3 7 7 N 1.31623 * 126.03888 * 317.24725 * 6 5 4 8 8 N 1.40071 * 108.10684 * 180.28989 * 7 6 5 9 9 H 0.97004 * 125.93060 * 179.67902 * 8 7 6 10 10 C 1.35038 * 108.13644 * 359.72292 * 8 7 6 11 11 C 1.35085 * 107.98547 * 359.97438 * 10 8 7 12 12 C 1.50696 * 126.07941 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.46767 * 105.94462 * 12 11 10 14 14 C 1.46838 * 111.00220 * 288.61539 * 13 12 11 15 15 C 1.53040 * 109.52197 * 174.16095 * 14 13 12 16 16 C 1.53123 * 109.27886 * 59.18348 * 15 14 13 17 17 C 1.53125 * 109.15867 * 302.34370 * 16 15 14 18 18 H 1.08998 * 109.53612 * 297.69781 * 17 16 15 19 19 C 1.50695 * 109.50379 * 177.59355 * 17 16 15 20 20 H 1.07997 * 120.00423 * 240.19989 * 19 17 16 21 21 C 1.37875 * 119.99916 * 60.19643 * 19 17 16 22 22 N 1.31517 * 120.00220 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00270 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47379 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47157 * 300.00185 * 23 21 19 26 26 H 1.48497 * 109.47035 * 59.99954 * 23 21 19 27 27 C 1.46849 * 110.99694 * 164.40526 * 13 12 11 28 28 C 1.39321 * 119.76016 * 0.26224 * 5 4 3 29 29 C 1.38025 * 119.87907 * 359.46194 * 28 5 4 30 30 H 1.09001 * 109.46750 * 90.00323 * 1 2 3 31 31 H 1.09001 * 109.47282 * 209.99667 * 1 2 3 32 32 H 1.08995 * 109.47720 * 330.00502 * 1 2 3 33 33 H 1.08003 * 119.93131 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.06172 * 179.97438 * 4 3 2 35 35 H 1.08004 * 126.00575 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47216 * 345.94683 * 12 11 10 37 37 H 1.08996 * 109.47301 * 225.94528 * 12 11 10 38 38 H 1.08994 * 109.46421 * 294.17682 * 14 13 12 39 39 H 1.08999 * 109.46323 * 54.14676 * 14 13 12 40 40 H 1.09001 * 109.50345 * 179.11874 * 15 14 13 41 41 H 1.08997 * 109.50417 * 299.24176 * 15 14 13 42 42 H 1.09000 * 109.52240 * 182.44167 * 16 15 14 43 43 H 1.09000 * 109.52443 * 62.24853 * 16 15 14 44 44 H 0.96998 * 120.00342 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.46037 * 65.82344 * 27 13 12 46 46 H 1.09006 * 109.46546 * 305.85679 * 27 13 12 47 47 H 1.08008 * 120.05858 * 179.72436 * 28 5 4 48 48 H 1.07999 * 119.93675 * 180.27756 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2052 0.0005 5 6 4.2754 0.0001 0.0016 6 6 5.7596 0.0001 0.0016 7 7 6.5340 0.7810 -0.7216 8 7 7.8667 0.4600 -0.4335 9 1 8.6500 0.8758 -0.8265 10 6 7.8715 -0.5292 0.4857 11 6 6.5882 -0.8329 0.7784 12 6 6.1253 -1.8812 1.7570 13 7 5.6207 -1.2279 2.9721 14 6 6.7202 -0.6449 3.7515 15 6 6.1481 0.1491 4.9281 16 6 5.3122 -0.7839 5.8087 17 6 4.2038 -1.4152 4.9616 18 1 3.5430 -0.6343 4.5854 19 6 3.4126 -2.3801 5.8065 20 1 3.3625 -3.4233 5.5315 21 6 2.7525 -1.9311 6.9306 22 7 2.8130 -0.6607 7.2653 23 14 1.7711 -3.1270 7.9776 24 1 1.1613 -2.3999 9.1197 25 1 0.6993 -3.7418 7.1539 26 1 2.6720 -4.1899 8.4911 27 6 4.8323 -2.1637 3.7839 28 6 3.5763 -1.2050 -0.0034 29 6 2.1960 -1.1993 0.0019 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6530 2.1329 -0.0004 34 1 4.1133 2.1422 0.0001 35 1 8.7475 -0.9951 0.9124 36 1 6.9609 -2.5319 2.0147 37 1 5.3294 -2.4735 1.3056 38 1 7.3607 -1.4421 4.1285 39 1 7.3042 0.0196 3.1147 40 1 6.9649 0.5687 5.5154 41 1 5.5184 0.9550 4.5514 42 1 4.8673 -0.2135 6.6241 43 1 5.9499 -1.5679 6.2170 44 1 2.3483 -0.3448 8.0560 45 1 5.4817 -2.9539 4.1608 46 1 4.0450 -2.6024 3.1708 47 1 4.1134 -2.1420 -0.0071 48 1 1.6532 -2.1329 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:01 Heat of formation + Delta-G solvation = 89.823489 kcal Electronic energy + Delta-G solvation = -27998.173666 eV Core-core repulsion = 24439.671647 eV Total energy + Delta-G solvation = -3558.502019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18945 -38.84247 -37.99010 -34.07779 -33.36054 -32.01808 -30.78101 -30.63565 -30.14186 -29.47945 -26.73682 -25.45484 -24.83615 -22.58814 -22.19532 -21.80202 -21.29077 -20.37271 -19.47220 -18.47877 -17.61503 -16.28696 -15.96904 -15.24598 -15.02119 -14.98331 -14.58232 -14.16847 -14.07725 -13.84239 -13.55688 -13.42934 -13.23021 -13.08070 -12.74835 -12.50560 -12.24144 -12.09120 -12.01884 -11.83108 -11.64339 -11.31516 -10.95524 -10.88846 -10.85104 -10.61603 -10.60136 -10.44737 -10.03891 -9.75942 -9.63510 -9.38664 -9.00033 -8.65163 -8.62522 -8.51152 -8.23118 -8.01593 -7.48935 -5.90572 -3.96457 1.30764 1.70851 2.01358 2.83672 2.92564 3.35748 3.40556 3.42797 4.06728 4.46767 4.58481 4.72138 4.95306 5.05856 5.09202 5.24253 5.35458 5.39243 5.40225 5.53575 5.64637 5.70573 5.76907 5.81642 5.87470 5.90809 5.96782 6.04234 6.13870 6.20916 6.30044 6.31528 6.36349 6.46247 6.49971 6.60937 6.77988 6.79959 6.81533 6.83606 6.84275 7.06877 7.23324 7.28559 7.31609 7.49340 7.70614 7.79761 7.83350 7.95286 8.18336 8.26313 8.56269 9.07725 9.67277 11.15342 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.004537 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.316813 B = 6169.552032 C = 8051.783208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.087 4.087 5 C -0.004 4.004 6 C 0.141 3.859 7 N -0.291 5.291 8 N -0.481 5.481 9 H 0.437 0.563 10 C 0.053 3.947 11 C -0.199 4.199 12 C 0.126 3.874 13 N -0.527 5.527 14 C 0.068 3.932 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.058 3.942 18 H 0.034 0.966 19 C -0.513 4.513 20 H 0.052 0.948 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.888 3.112 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.279 1.279 27 C 0.070 3.930 28 C -0.083 4.083 29 C -0.117 4.117 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.259 0.741 45 H 0.016 0.984 46 H 0.058 0.942 47 H 0.122 0.878 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 1.350 -15.973 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.006 4.006 6 C -0.025 4.025 7 N -0.114 5.114 8 N -0.189 5.189 9 H 0.281 0.719 10 C -0.094 4.094 11 C -0.211 4.211 12 C -0.003 4.003 13 N -0.251 5.251 14 C -0.060 4.060 15 C -0.154 4.154 16 C -0.147 4.147 17 C 0.039 3.961 18 H 0.052 0.948 19 C -0.552 4.552 20 H 0.070 0.930 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.716 3.284 24 H -0.214 1.214 25 H -0.203 1.203 26 H -0.205 1.205 27 C -0.056 4.056 28 C -0.103 4.103 29 C -0.135 4.135 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.190 0.810 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.140 0.860 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.684 2.779 -16.819 17.969 hybrid contribution 0.700 -1.664 1.466 2.325 sum 6.383 1.115 -15.353 16.664 Atomic orbital electron populations 1.20793 0.91447 1.03062 1.01791 1.19925 0.95952 0.93208 0.99002 1.20873 0.93817 0.97488 1.01785 1.21056 0.93939 0.97114 0.98516 1.17590 0.87492 0.93685 1.01800 1.20572 0.93186 0.94050 0.94709 1.77537 0.86631 1.23157 1.24110 1.46099 1.07116 1.30669 1.34995 0.71930 1.22276 0.99158 0.93464 0.94489 1.20085 0.91074 1.05196 1.04734 1.20369 0.98090 0.91937 0.89889 1.61918 1.22468 1.34991 1.05757 1.21960 0.92118 0.97088 0.94847 1.21657 0.98872 0.99115 0.95760 1.21640 0.96268 0.97272 0.99543 1.18623 0.92796 0.94925 0.89782 0.94783 1.21112 1.30092 0.94719 1.09227 0.92999 1.24915 0.96377 0.94955 0.97490 1.69889 1.43160 1.13602 1.26063 0.86731 0.80454 0.81225 0.79983 1.21391 1.20330 1.20457 1.22291 0.94980 0.92950 0.95429 1.21012 0.93901 0.96928 0.98427 1.20874 0.93770 0.97558 1.01285 0.91553 0.91377 0.91567 0.86191 0.86237 0.81032 0.95038 0.90419 0.96298 0.92779 0.93928 0.92282 0.89309 0.95325 0.93105 0.96601 0.92353 0.86016 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.08 -1.09 5.88 -104.56 -0.62 -1.71 16 3 C -0.12 -1.69 9.68 -39.63 -0.38 -2.07 16 4 C -0.09 -1.32 9.78 -39.26 -0.38 -1.70 16 5 C 0.00 -0.06 5.74 -104.89 -0.60 -0.66 16 6 C 0.14 2.18 6.66 -82.77 -0.55 1.63 16 7 N -0.29 -4.30 12.74 33.43 0.43 -3.87 16 8 N -0.48 -5.36 7.35 30.42 0.22 -5.14 16 9 H 0.44 3.22 8.96 -182.62 -1.64 1.58 16 10 C 0.05 0.60 11.46 -17.26 -0.20 0.40 16 11 C -0.20 -2.85 4.77 -104.76 -0.50 -3.35 16 12 C 0.13 1.91 4.96 -4.98 -0.02 1.89 16 13 N -0.53 -9.74 4.60 -236.12 -1.09 -10.83 16 14 C 0.07 1.22 5.30 -3.84 -0.02 1.20 16 15 C -0.12 -2.35 6.09 -26.65 -0.16 -2.52 16 16 C -0.11 -2.62 5.03 -26.60 -0.13 -2.76 16 17 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 18 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 20 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.89 -25.56 11.36 55.43 0.63 -24.93 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.07 1.49 4.67 -3.83 -0.02 1.47 16 28 C -0.08 -1.22 8.89 -39.26 -0.35 -1.57 16 29 C -0.12 -1.62 9.68 -39.63 -0.38 -2.00 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.03 0.44 8.04 -51.93 -0.42 0.02 16 37 H 0.08 1.15 5.52 -51.93 -0.29 0.86 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.90 6.99 -51.93 -0.36 0.53 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 47 H 0.12 1.63 6.25 -52.48 -0.33 1.30 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -31.40 383.00 -12.42 -43.82 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.80 Total: 2.94 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -4.56 Total: -24.06 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.19 Total: -44.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.40 -12.42 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.643 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds