Wall clock time and date at job start Tue Mar 31 2020 16:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38326 * 119.88002 * 2 1 4 4 C 1.38013 * 120.12129 * 179.97438 * 3 2 1 5 5 C 1.39323 * 119.87956 * 359.97438 * 4 3 2 6 6 C 1.48425 * 120.11998 * 179.97438 * 5 4 3 7 7 N 1.31623 * 126.03888 * 317.24725 * 6 5 4 8 8 N 1.40071 * 108.10684 * 180.28989 * 7 6 5 9 9 H 0.97004 * 125.93060 * 179.67902 * 8 7 6 10 10 C 1.35038 * 108.13644 * 359.72292 * 8 7 6 11 11 C 1.35085 * 107.98547 * 359.97438 * 10 8 7 12 12 C 1.50696 * 126.07941 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.46767 * 105.94462 * 12 11 10 14 14 C 1.46838 * 111.00220 * 288.61539 * 13 12 11 15 15 C 1.53040 * 109.52197 * 174.16095 * 14 13 12 16 16 C 1.53123 * 109.27886 * 59.18348 * 15 14 13 17 17 C 1.53125 * 109.15867 * 302.34370 * 16 15 14 18 18 H 1.08998 * 109.53612 * 297.69781 * 17 16 15 19 19 C 1.50695 * 109.50379 * 177.59355 * 17 16 15 20 20 H 1.07997 * 120.00423 * 240.19989 * 19 17 16 21 21 C 1.37875 * 119.99916 * 60.19643 * 19 17 16 22 22 N 1.31517 * 120.00220 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00270 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47379 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47157 * 300.00185 * 23 21 19 26 26 H 1.48497 * 109.47035 * 59.99954 * 23 21 19 27 27 C 1.46849 * 110.99694 * 164.40526 * 13 12 11 28 28 C 1.39321 * 119.76016 * 0.26224 * 5 4 3 29 29 C 1.38025 * 119.87907 * 359.46194 * 28 5 4 30 30 H 1.09001 * 109.46750 * 90.00323 * 1 2 3 31 31 H 1.09001 * 109.47282 * 209.99667 * 1 2 3 32 32 H 1.08995 * 109.47720 * 330.00502 * 1 2 3 33 33 H 1.08003 * 119.93131 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.06172 * 179.97438 * 4 3 2 35 35 H 1.08004 * 126.00575 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47216 * 345.94683 * 12 11 10 37 37 H 1.08996 * 109.47301 * 225.94528 * 12 11 10 38 38 H 1.08994 * 109.46421 * 294.17682 * 14 13 12 39 39 H 1.08999 * 109.46323 * 54.14676 * 14 13 12 40 40 H 1.09001 * 109.50345 * 179.11874 * 15 14 13 41 41 H 1.08997 * 109.50417 * 299.24176 * 15 14 13 42 42 H 1.09000 * 109.52240 * 182.44167 * 16 15 14 43 43 H 1.09000 * 109.52443 * 62.24853 * 16 15 14 44 44 H 0.96998 * 120.00342 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.46037 * 65.82344 * 27 13 12 46 46 H 1.09006 * 109.46546 * 305.85679 * 27 13 12 47 47 H 1.08008 * 120.05858 * 179.72436 * 28 5 4 48 48 H 1.07999 * 119.93675 * 180.27756 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2052 0.0005 5 6 4.2754 0.0001 0.0016 6 6 5.7596 0.0001 0.0016 7 7 6.5340 0.7810 -0.7216 8 7 7.8667 0.4600 -0.4335 9 1 8.6500 0.8758 -0.8265 10 6 7.8715 -0.5292 0.4857 11 6 6.5882 -0.8329 0.7784 12 6 6.1253 -1.8812 1.7570 13 7 5.6207 -1.2279 2.9721 14 6 6.7202 -0.6449 3.7515 15 6 6.1481 0.1491 4.9281 16 6 5.3122 -0.7839 5.8087 17 6 4.2038 -1.4152 4.9616 18 1 3.5430 -0.6343 4.5854 19 6 3.4126 -2.3801 5.8065 20 1 3.3625 -3.4233 5.5315 21 6 2.7525 -1.9311 6.9306 22 7 2.8130 -0.6607 7.2653 23 14 1.7711 -3.1270 7.9776 24 1 1.1613 -2.3999 9.1197 25 1 0.6993 -3.7418 7.1539 26 1 2.6720 -4.1899 8.4911 27 6 4.8323 -2.1637 3.7839 28 6 3.5763 -1.2050 -0.0034 29 6 2.1960 -1.1993 0.0019 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6530 2.1329 -0.0004 34 1 4.1133 2.1422 0.0001 35 1 8.7475 -0.9951 0.9124 36 1 6.9609 -2.5319 2.0147 37 1 5.3294 -2.4735 1.3056 38 1 7.3607 -1.4421 4.1285 39 1 7.3042 0.0196 3.1147 40 1 6.9649 0.5687 5.5154 41 1 5.5184 0.9550 4.5514 42 1 4.8673 -0.2135 6.6241 43 1 5.9499 -1.5679 6.2170 44 1 2.3483 -0.3448 8.0560 45 1 5.4817 -2.9539 4.1608 46 1 4.0450 -2.6024 3.1708 47 1 4.1134 -2.1420 -0.0071 48 1 1.6532 -2.1329 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:00 Heat of formation + Delta-G solvation = 72.185446 kcal Electronic energy + Delta-G solvation = -27998.938509 eV Core-core repulsion = 24439.671647 eV Total energy + Delta-G solvation = -3559.266862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.19334 -39.89398 -39.58426 -35.74691 -34.51913 -33.70031 -31.85090 -31.76122 -31.64475 -30.97318 -27.72337 -26.85012 -26.71818 -23.77418 -23.41345 -23.15027 -22.96197 -21.40652 -20.52543 -20.26021 -18.68951 -18.23757 -17.01451 -16.73287 -16.40961 -16.11532 -16.08671 -15.56547 -15.28481 -15.16686 -14.85668 -14.59879 -14.45022 -14.35894 -14.20091 -14.01053 -13.72487 -13.49398 -13.23099 -13.00155 -12.82376 -12.80253 -12.73802 -12.50268 -12.40278 -12.00030 -11.90147 -11.77885 -11.64903 -11.52730 -11.31698 -10.83308 -10.62958 -10.60358 -10.32483 -9.75062 -9.56256 -9.09169 -8.89872 -8.02562 -6.16595 0.23043 0.60172 1.06004 1.43991 1.45368 1.52728 1.79359 2.04232 2.46878 2.97583 3.24399 3.33651 3.60910 3.96833 4.05061 4.10090 4.15631 4.22733 4.30064 4.34087 4.47041 4.48324 4.56642 4.63400 4.68256 4.76053 4.81124 4.82792 4.89835 4.92209 4.96887 5.01793 5.07365 5.11267 5.19816 5.25345 5.26843 5.32092 5.41063 5.44780 5.58274 5.68056 5.68634 5.72365 5.77024 6.04712 6.17339 6.20608 6.30133 6.49262 6.51388 6.55736 6.74141 6.97093 7.51139 9.01891 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.004537 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.316813 B = 6169.552032 C = 8051.783208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.106 4.106 5 C -0.021 4.021 6 C 0.124 3.876 7 N -0.320 5.320 8 N -0.465 5.465 9 H 0.454 0.546 10 C 0.079 3.921 11 C -0.229 4.229 12 C 0.132 3.868 13 N -0.539 5.539 14 C 0.075 3.925 15 C -0.110 4.110 16 C -0.101 4.101 17 C 0.058 3.942 18 H -0.012 1.012 19 C -0.532 4.532 20 H 0.053 0.947 21 C 0.014 3.986 22 N -0.917 5.917 23 Si 0.951 3.049 24 H -0.286 1.286 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.087 3.913 28 C -0.094 4.094 29 C -0.128 4.128 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.215 0.785 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.025 0.975 44 H 0.258 0.742 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.130 0.870 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 0.248 -16.694 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.125 4.125 5 C -0.023 4.023 6 C -0.041 4.041 7 N -0.144 5.144 8 N -0.174 5.174 9 H 0.301 0.699 10 C -0.069 4.069 11 C -0.240 4.240 12 C 0.004 3.996 13 N -0.264 5.264 14 C -0.052 4.052 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.039 3.961 18 H 0.007 0.993 19 C -0.571 4.571 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.557 5.557 23 Si 0.777 3.223 24 H -0.212 1.212 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.041 4.041 28 C -0.113 4.113 29 C -0.146 4.146 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.231 0.769 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.147 0.853 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.176 1.686 -17.574 19.058 hybrid contribution 0.279 -1.269 1.648 2.098 sum 7.456 0.417 -15.926 17.590 Atomic orbital electron populations 1.20832 0.89516 1.03338 1.03170 1.20298 0.97519 0.92982 0.98316 1.21154 0.93636 0.98593 1.01468 1.21200 0.94675 0.97144 0.99516 1.17835 0.88311 0.94037 1.02162 1.20674 0.93216 0.94783 0.95439 1.77479 0.88117 1.23845 1.24943 1.46148 1.06703 1.30177 1.34392 0.69851 1.22813 0.99367 0.91961 0.92769 1.20067 0.92181 1.06079 1.05702 1.20327 0.98687 0.92347 0.88261 1.61819 1.23263 1.34911 1.06391 1.21890 0.91907 0.97377 0.94056 1.21561 0.98667 0.98032 0.96488 1.21435 0.96208 0.97309 0.98985 1.18514 0.92564 0.93751 0.91283 0.99331 1.21498 1.30632 0.95154 1.09778 0.92912 1.25703 0.97417 0.96519 0.98763 1.70052 1.43883 1.15328 1.26424 0.85718 0.79137 0.79170 0.78264 1.21196 1.19613 1.19577 1.21917 0.95221 0.92710 0.94216 1.21186 0.94387 0.97070 0.98666 1.21193 0.93844 0.98547 1.01006 0.89539 0.91194 0.91168 0.84450 0.86540 0.76876 0.92965 0.90646 0.95076 0.90566 0.91680 0.94340 0.92844 0.95632 0.93257 0.96452 0.92749 0.85252 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 10.01 71.24 0.71 -1.63 16 2 C -0.09 -2.46 5.88 -19.83 -0.12 -2.58 16 3 C -0.13 -3.69 9.68 22.24 0.22 -3.48 16 4 C -0.11 -3.32 9.78 22.48 0.22 -3.10 16 5 C -0.02 -0.68 5.74 -20.04 -0.11 -0.80 16 6 C 0.12 3.75 6.66 42.53 0.28 4.03 16 7 N -0.32 -9.09 12.74 -48.15 -0.61 -9.70 16 8 N -0.46 -9.03 7.35 -57.67 -0.42 -9.45 16 9 H 0.45 5.23 8.96 -213.33 -1.91 3.32 16 10 C 0.08 1.50 11.46 83.47 0.96 2.46 16 11 C -0.23 -6.04 4.77 -19.95 -0.10 -6.13 16 12 C 0.13 3.73 4.96 85.56 0.42 4.15 16 13 N -0.54 -19.39 4.60 -900.96 -4.15 -23.54 16 14 C 0.08 2.55 5.30 86.33 0.46 3.00 16 15 C -0.11 -4.40 6.09 30.65 0.19 -4.21 16 16 C -0.10 -4.96 5.03 30.68 0.15 -4.81 16 17 C 0.06 2.99 2.26 -11.49 -0.03 2.97 16 18 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 19 C -0.53 -29.75 8.56 25.60 0.22 -29.53 16 20 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 21 C 0.01 0.81 5.30 84.65 0.45 1.26 16 22 N -0.92 -54.38 11.36 21.45 0.24 -54.13 16 23 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.09 3.68 4.67 86.33 0.40 4.08 16 28 C -0.09 -2.78 8.89 22.48 0.20 -2.58 16 29 C -0.13 -3.56 9.68 22.24 0.22 -3.35 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.05 1.27 8.04 -2.39 -0.02 1.25 16 37 H 0.08 2.14 5.52 -2.39 -0.01 2.13 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 2.27 6.99 -2.39 -0.02 2.25 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 2.99 6.17 -2.39 -0.01 2.97 16 43 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.05 2.30 7.96 -2.38 -0.02 2.28 16 47 H 0.13 3.48 6.25 -2.91 -0.02 3.46 16 48 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -70.32 383.00 0.87 -69.45 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.95 Total: 21.55 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 4.74 Total: -40.24 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.94 Total: -96.83 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.32 0.87 -69.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.635 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds