Wall clock time and date at job start Tue Mar 31 2020 14:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35809 * 116.99854 * 2 1 4 4 C 1.36662 * 120.22823 * 0.02562 * 3 2 1 5 5 C 1.39189 * 120.92279 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.47163 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47260 * 89.99700 * 6 5 4 8 8 C 1.46852 * 110.99960 * 66.04535 * 7 6 5 9 9 C 1.53032 * 109.52418 * 185.83899 * 8 7 6 10 10 C 1.53114 * 109.28203 * 300.82100 * 9 8 7 11 11 C 1.53122 * 109.15873 * 57.65286 * 10 9 8 12 12 H 1.09003 * 109.50270 * 62.32765 * 11 10 9 13 13 C 1.50700 * 109.50359 * 182.40592 * 11 10 9 14 14 H 1.08005 * 120.00027 * 120.00639 * 13 11 10 15 15 C 1.37878 * 120.00211 * 300.00093 * 13 11 10 16 16 N 1.31520 * 119.99957 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00252 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46776 * 60.00104 * 17 15 13 19 19 H 1.48504 * 109.47305 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47142 * 300.00448 * 17 15 13 21 21 C 1.46844 * 111.00403 * 190.25450 * 7 6 5 22 22 C 1.36169 * 121.05957 * 0.02562 * 5 4 3 23 23 C 1.40516 * 119.77025 * 359.95591 * 22 5 4 24 24 C 1.40560 * 121.27252 * 180.02562 * 23 22 5 25 25 C 1.36093 * 119.65132 * 180.02562 * 24 23 22 26 26 C 1.39361 * 120.97973 * 359.68603 * 25 24 23 27 27 C 1.36135 * 120.97666 * 0.62760 * 26 25 24 28 28 C 1.40422 * 119.66279 * 359.39607 * 27 26 25 29 29 H 1.09000 * 109.46917 * 60.00436 * 1 2 3 30 30 H 1.08997 * 109.46589 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47142 * 299.99790 * 1 2 3 32 32 H 1.07996 * 119.54001 * 359.95404 * 4 3 2 33 33 H 1.08999 * 109.47161 * 209.99831 * 6 5 4 34 34 H 1.08998 * 109.46927 * 329.99747 * 6 5 4 35 35 H 1.09003 * 109.46364 * 305.86174 * 8 7 6 36 36 H 1.09006 * 109.46133 * 65.82553 * 8 7 6 37 37 H 1.08995 * 109.50615 * 60.76463 * 9 8 7 38 38 H 1.09007 * 109.50285 * 180.88313 * 9 8 7 39 39 H 1.08995 * 109.53183 * 177.56192 * 10 9 8 40 40 H 1.09002 * 109.52442 * 297.75138 * 10 9 8 41 41 H 0.96997 * 120.00320 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.46118 * 294.18200 * 21 7 6 43 43 H 1.09006 * 109.45966 * 54.14819 * 21 7 6 44 44 H 1.08003 * 120.11799 * 180.02562 * 22 5 4 45 45 H 1.08005 * 120.17053 * 0.05058 * 24 23 22 46 46 H 1.07999 * 119.51009 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.51565 * 180.32896 * 26 25 24 48 48 H 1.08002 * 120.17255 * 179.68020 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.3058 2.3592 0.0005 5 6 1.9226 3.6069 0.0011 6 6 1.0750 4.8530 0.0011 7 7 0.7990 5.2575 1.3860 8 6 2.0311 5.6732 2.0683 9 6 1.7312 5.9472 3.5437 10 6 0.6716 7.0476 3.6484 11 6 -0.5839 6.6102 2.8888 12 1 -0.9933 5.7112 3.3496 13 6 -1.6105 7.7123 2.9369 14 1 -1.9685 8.1572 2.0201 15 6 -2.0929 8.1527 4.1511 16 7 -1.6567 7.6113 5.2675 17 14 -3.3650 9.5194 4.2107 18 1 -4.5823 9.0949 3.4736 19 1 -3.7168 9.8070 5.6245 20 1 -2.8067 10.7430 3.5812 21 6 -0.2168 6.3169 1.4324 22 6 3.2796 3.7198 0.0006 23 6 4.0760 2.5621 0.0004 24 6 5.4793 2.6419 0.0004 25 6 6.2187 1.4993 -0.0002 26 6 5.6052 0.2480 0.0056 27 6 4.2488 0.1326 -0.0006 28 6 3.4529 1.2895 -0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2276 2.2982 0.0002 33 1 1.6067 5.6541 -0.5123 34 1 0.1350 4.6530 -0.5132 35 1 2.7749 4.8801 1.9900 36 1 2.4166 6.5797 1.6016 37 1 1.3587 5.0374 4.0145 38 1 2.6427 6.2708 4.0464 39 1 0.4233 7.2159 4.6962 40 1 1.0587 7.9686 3.2124 41 1 -1.9963 7.9209 6.1217 42 1 0.1792 7.2204 0.9686 43 1 -1.1060 5.9914 0.8923 44 1 3.7422 4.6958 0.0014 45 1 5.9683 3.6050 0.0014 46 1 7.2967 1.5633 0.0002 47 1 6.2149 -0.6435 0.0103 48 1 3.7871 -0.8438 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:47 Heat of formation + Delta-G solvation = 0.579019 kcal Electronic energy + Delta-G solvation = -27386.819121 eV Core-core repulsion = 23792.154421 eV Total energy + Delta-G solvation = -3594.664701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86247 -38.64890 -38.37602 -36.25514 -33.66020 -32.25291 -31.90804 -30.38544 -29.84576 -28.88336 -27.52612 -25.92297 -24.90809 -23.13076 -22.62174 -21.83150 -21.53030 -20.84673 -18.58918 -17.67848 -17.56180 -16.92719 -16.37042 -15.87044 -15.55269 -15.16149 -14.99265 -14.54775 -14.24341 -14.18306 -13.75597 -13.59133 -13.42332 -13.19859 -13.06986 -12.61322 -12.41835 -12.28339 -11.95421 -11.83567 -11.74967 -11.68539 -11.25622 -11.05545 -10.93192 -10.88236 -10.82605 -10.61649 -10.58561 -10.06321 -9.82156 -9.54775 -9.45401 -9.05551 -8.70027 -8.59101 -8.29473 -7.71561 -7.50038 -5.96586 -4.03125 0.57805 0.95289 2.05159 2.95290 3.10042 3.32057 3.36997 3.39162 4.03981 4.42114 4.58146 4.67600 4.74289 4.82917 4.87285 4.99978 5.08433 5.11203 5.18607 5.31064 5.33210 5.34757 5.43074 5.49833 5.64295 5.70954 5.82849 5.87769 5.92422 5.96416 6.01062 6.12574 6.19827 6.29129 6.39625 6.41711 6.45501 6.52173 6.61779 6.73151 6.76206 6.77250 6.89228 6.97778 7.23749 7.29838 7.40921 7.67286 7.75268 7.81617 8.09302 8.18963 8.48648 9.00773 9.61040 11.09221 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002835 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.740425 B = 9875.046046 C =10630.015355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.138 3.862 4 C -0.193 4.193 5 C -0.017 4.017 6 C 0.087 3.913 7 N -0.531 5.531 8 C 0.059 3.941 9 C -0.116 4.116 10 C -0.111 4.111 11 C 0.056 3.944 12 H 0.034 0.966 13 C -0.516 4.516 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.068 3.932 22 C -0.145 4.145 23 C -0.015 4.015 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.083 4.083 28 C -0.072 4.072 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.885 -14.129 -11.782 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.018 4.018 6 C -0.041 4.041 7 N -0.256 5.256 8 C -0.069 4.069 9 C -0.154 4.154 10 C -0.149 4.149 11 C 0.038 3.962 12 H 0.052 0.948 13 C -0.555 4.555 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.059 4.059 22 C -0.164 4.164 23 C -0.016 4.016 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.155 4.155 27 C -0.100 4.100 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.729 -14.703 -11.330 21.957 hybrid contribution -0.648 1.652 -0.291 1.799 sum 11.081 -13.051 -11.621 20.692 Atomic orbital electron populations 1.23104 0.77918 1.03872 1.02013 1.85966 1.21684 1.26811 1.88387 1.18615 0.91148 0.84507 0.96506 1.20742 1.00405 0.91396 1.08717 1.19285 0.93414 0.94345 0.94738 1.21106 0.98323 0.92998 0.91648 1.62010 1.10265 1.41123 1.12176 1.22138 0.91352 0.97508 0.95928 1.21662 0.99094 1.00843 0.93834 1.21656 0.94386 0.94363 1.04458 1.18647 0.92846 0.96570 0.88180 0.94821 1.21111 1.22807 1.19220 0.92316 0.92921 1.24933 0.96506 0.96621 0.95749 1.69883 1.43225 1.42172 0.97388 0.86693 0.82030 0.82559 0.76891 1.20322 1.21319 1.20395 1.22338 0.92296 0.89761 1.01461 1.20781 0.93113 0.97374 1.05102 1.17838 0.93522 0.91819 0.98379 1.20970 0.92257 0.98896 1.01165 1.20841 0.99893 0.92519 0.99426 1.20775 0.94717 0.97562 1.02424 1.20931 0.93650 0.97677 0.97791 1.17409 0.90031 0.93821 1.06024 0.92505 0.88257 0.91979 0.85150 0.94357 0.90249 0.91793 0.96019 0.92203 0.93601 0.89127 0.95204 0.93000 0.96228 0.92288 0.85711 0.85488 0.86149 0.86177 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.84 9.72 -19.14 -0.19 -4.02 16 3 C 0.14 1.87 6.67 -39.12 -0.26 1.61 16 4 C -0.19 -2.67 8.62 -39.80 -0.34 -3.02 16 5 C -0.02 -0.25 4.88 -105.01 -0.51 -0.76 16 6 C 0.09 1.32 5.09 -4.98 -0.03 1.29 16 7 N -0.53 -9.81 4.65 -236.11 -1.10 -10.91 16 8 C 0.06 1.05 5.13 -3.83 -0.02 1.03 16 9 C -0.12 -2.34 6.09 -26.66 -0.16 -2.50 16 10 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 11 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 12 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 13 C -0.52 -14.09 8.56 -34.44 -0.29 -14.38 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.36 11.35 55.43 0.63 -24.73 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.07 1.43 4.68 -3.84 -0.02 1.41 16 22 C -0.14 -1.95 7.52 -39.47 -0.30 -2.25 16 23 C -0.02 -0.20 5.74 -106.84 -0.61 -0.82 16 24 C -0.11 -1.27 9.77 -39.48 -0.39 -1.65 16 25 C -0.11 -1.06 9.95 -39.93 -0.40 -1.46 16 26 C -0.14 -1.36 9.95 -39.92 -0.40 -1.76 16 27 C -0.08 -0.96 9.56 -39.52 -0.38 -1.34 16 28 C -0.07 -0.98 5.75 -106.72 -0.61 -1.59 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.13 1.66 6.21 -52.49 -0.33 1.34 16 33 H 0.04 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 35 H 0.06 1.07 5.74 -51.93 -0.30 0.77 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 44 H 0.12 1.53 7.91 -52.48 -0.41 1.12 16 45 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.13 1.34 7.62 -52.49 -0.40 0.94 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -29.85 377.08 -11.72 -41.57 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.57 Total: 1.09 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -4.16 Total: -24.87 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.47 Total: -35.64 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.19 Total: -4.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.85 -11.72 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.152 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds