Wall clock time and date at job start Tue Mar 31 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35809 * 116.99854 * 2 1 4 4 C 1.36662 * 120.22823 * 0.02562 * 3 2 1 5 5 C 1.39189 * 120.92279 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.47163 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47260 * 89.99700 * 6 5 4 8 8 C 1.46852 * 110.99960 * 66.04535 * 7 6 5 9 9 C 1.53032 * 109.52418 * 185.83899 * 8 7 6 10 10 C 1.53114 * 109.28203 * 300.82100 * 9 8 7 11 11 C 1.53122 * 109.15873 * 57.65286 * 10 9 8 12 12 H 1.09003 * 109.50270 * 62.32765 * 11 10 9 13 13 C 1.50700 * 109.50359 * 182.40592 * 11 10 9 14 14 H 1.08005 * 120.00027 * 120.00639 * 13 11 10 15 15 C 1.37878 * 120.00211 * 300.00093 * 13 11 10 16 16 N 1.31520 * 119.99957 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00252 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46776 * 60.00104 * 17 15 13 19 19 H 1.48504 * 109.47305 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47142 * 300.00448 * 17 15 13 21 21 C 1.46844 * 111.00403 * 190.25450 * 7 6 5 22 22 C 1.36169 * 121.05957 * 0.02562 * 5 4 3 23 23 C 1.40516 * 119.77025 * 359.95591 * 22 5 4 24 24 C 1.40560 * 121.27252 * 180.02562 * 23 22 5 25 25 C 1.36093 * 119.65132 * 180.02562 * 24 23 22 26 26 C 1.39361 * 120.97973 * 359.68603 * 25 24 23 27 27 C 1.36135 * 120.97666 * 0.62760 * 26 25 24 28 28 C 1.40422 * 119.66279 * 359.39607 * 27 26 25 29 29 H 1.09000 * 109.46917 * 60.00436 * 1 2 3 30 30 H 1.08997 * 109.46589 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47142 * 299.99790 * 1 2 3 32 32 H 1.07996 * 119.54001 * 359.95404 * 4 3 2 33 33 H 1.08999 * 109.47161 * 209.99831 * 6 5 4 34 34 H 1.08998 * 109.46927 * 329.99747 * 6 5 4 35 35 H 1.09003 * 109.46364 * 305.86174 * 8 7 6 36 36 H 1.09006 * 109.46133 * 65.82553 * 8 7 6 37 37 H 1.08995 * 109.50615 * 60.76463 * 9 8 7 38 38 H 1.09007 * 109.50285 * 180.88313 * 9 8 7 39 39 H 1.08995 * 109.53183 * 177.56192 * 10 9 8 40 40 H 1.09002 * 109.52442 * 297.75138 * 10 9 8 41 41 H 0.96997 * 120.00320 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.46118 * 294.18200 * 21 7 6 43 43 H 1.09006 * 109.45966 * 54.14819 * 21 7 6 44 44 H 1.08003 * 120.11799 * 180.02562 * 22 5 4 45 45 H 1.08005 * 120.17053 * 0.05058 * 24 23 22 46 46 H 1.07999 * 119.51009 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.51565 * 180.32896 * 26 25 24 48 48 H 1.08002 * 120.17255 * 179.68020 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.3058 2.3592 0.0005 5 6 1.9226 3.6069 0.0011 6 6 1.0750 4.8530 0.0011 7 7 0.7990 5.2575 1.3860 8 6 2.0311 5.6732 2.0683 9 6 1.7312 5.9472 3.5437 10 6 0.6716 7.0476 3.6484 11 6 -0.5839 6.6102 2.8888 12 1 -0.9933 5.7112 3.3496 13 6 -1.6105 7.7123 2.9369 14 1 -1.9685 8.1572 2.0201 15 6 -2.0929 8.1527 4.1511 16 7 -1.6567 7.6113 5.2675 17 14 -3.3650 9.5194 4.2107 18 1 -4.5823 9.0949 3.4736 19 1 -3.7168 9.8070 5.6245 20 1 -2.8067 10.7430 3.5812 21 6 -0.2168 6.3169 1.4324 22 6 3.2796 3.7198 0.0006 23 6 4.0760 2.5621 0.0004 24 6 5.4793 2.6419 0.0004 25 6 6.2187 1.4993 -0.0002 26 6 5.6052 0.2480 0.0056 27 6 4.2488 0.1326 -0.0006 28 6 3.4529 1.2895 -0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2276 2.2982 0.0002 33 1 1.6067 5.6541 -0.5123 34 1 0.1350 4.6530 -0.5132 35 1 2.7749 4.8801 1.9900 36 1 2.4166 6.5797 1.6016 37 1 1.3587 5.0374 4.0145 38 1 2.6427 6.2708 4.0464 39 1 0.4233 7.2159 4.6962 40 1 1.0587 7.9686 3.2124 41 1 -1.9963 7.9209 6.1217 42 1 0.1792 7.2204 0.9686 43 1 -1.1060 5.9914 0.8923 44 1 3.7422 4.6958 0.0014 45 1 5.9683 3.6050 0.0014 46 1 7.2967 1.5633 0.0002 47 1 6.2149 -0.6435 0.0103 48 1 3.7871 -0.8438 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:46 Heat of formation + Delta-G solvation = -14.395065 kcal Electronic energy + Delta-G solvation = -27387.468446 eV Core-core repulsion = 23792.154421 eV Total energy + Delta-G solvation = -3595.314026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.78968 -39.92903 -39.44229 -37.40849 -35.37095 -33.64271 -33.04888 -31.76030 -31.36651 -29.87734 -28.36149 -27.13350 -26.87392 -24.08824 -23.90804 -23.31886 -22.57680 -22.20355 -20.35327 -18.66193 -18.47759 -18.30372 -17.84660 -16.86793 -16.69901 -16.47891 -16.31192 -15.93600 -15.56578 -15.11239 -15.06896 -14.90740 -14.65412 -14.43942 -14.25050 -14.04213 -13.96514 -13.54428 -13.35695 -13.00453 -12.83392 -12.72992 -12.59843 -12.56248 -12.54010 -12.39788 -11.97206 -11.89943 -11.75118 -11.67874 -11.62383 -11.36466 -10.86356 -10.66805 -10.42095 -10.36529 -9.54445 -9.14443 -8.46320 -8.07291 -6.21859 -0.32024 0.02645 1.13191 1.41851 1.43066 1.50689 2.03145 2.26257 2.43325 3.04900 3.19488 3.33340 3.67237 3.73411 3.98142 4.06739 4.13303 4.18991 4.23992 4.30991 4.31783 4.37191 4.41331 4.47053 4.51733 4.57413 4.62437 4.66530 4.71806 4.73397 4.77012 4.88916 4.96621 4.98941 5.07590 5.10768 5.17811 5.18221 5.32195 5.37670 5.51180 5.56954 5.58290 5.63601 5.67634 5.78393 5.96258 6.07465 6.12148 6.21079 6.32162 6.38503 6.45952 6.90928 7.46062 8.97121 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002835 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.740425 B = 9875.046046 C =10630.015355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.130 3.870 4 C -0.208 4.208 5 C -0.034 4.034 6 C 0.092 3.908 7 N -0.542 5.542 8 C 0.066 3.934 9 C -0.110 4.110 10 C -0.103 4.103 11 C 0.055 3.945 12 H -0.006 1.006 13 C -0.536 4.536 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.082 3.918 22 C -0.145 4.145 23 C -0.033 4.033 24 C -0.124 4.124 25 C -0.105 4.105 26 C -0.129 4.129 27 C -0.101 4.101 28 C -0.093 4.093 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.260 0.740 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.136 0.864 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.149 0.851 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.700 -14.612 -13.042 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.237 6.237 3 C 0.085 3.915 4 C -0.227 4.227 5 C -0.034 4.034 6 C -0.035 4.035 7 N -0.267 5.267 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.036 3.964 12 H 0.012 0.988 13 C -0.575 4.575 14 H 0.071 0.929 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.045 4.045 22 C -0.164 4.164 23 C -0.033 4.033 24 C -0.141 4.141 25 C -0.123 4.123 26 C -0.147 4.147 27 C -0.119 4.119 28 C -0.093 4.093 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.167 0.833 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.546 -15.197 -12.608 23.946 hybrid contribution -1.130 1.675 0.096 2.023 sum 12.415 -13.522 -12.512 22.216 Atomic orbital electron populations 1.23325 0.76490 1.05621 1.01985 1.85952 1.23179 1.26349 1.88230 1.18772 0.91595 0.84792 0.96382 1.20807 1.00644 0.91636 1.09659 1.19210 0.93762 0.93884 0.96594 1.21091 0.99091 0.93755 0.89521 1.61906 1.10157 1.39885 1.14717 1.22069 0.91474 0.98511 0.94107 1.21574 0.98624 0.98653 0.95942 1.21459 0.95163 0.95472 1.02015 1.18562 0.92888 0.94265 0.90710 0.98760 1.21500 1.23602 1.19901 0.92490 0.92867 1.25732 0.98457 0.98915 0.95419 1.70038 1.44294 1.43428 0.97789 0.85673 0.79633 0.79754 0.76950 1.19609 1.21040 1.19635 1.22002 0.93358 0.90644 0.98489 1.20932 0.92837 0.98119 1.04468 1.18087 0.94707 0.91559 0.98977 1.21267 0.91414 1.00474 1.00979 1.21257 1.01528 0.91893 0.97639 1.21180 0.94310 0.98973 1.00213 1.21102 0.94509 0.97413 0.98841 1.17733 0.90320 0.94816 1.06446 0.91756 0.85639 0.92776 0.85000 0.93263 0.89772 0.89941 0.95202 0.93732 0.91388 0.92438 0.95702 0.93095 0.96274 0.92209 0.84605 0.83553 0.83005 0.83335 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.32 -7.80 9.72 -91.40 -0.89 -8.69 16 3 C 0.13 3.53 6.67 22.57 0.15 3.68 16 4 C -0.21 -5.78 8.62 22.13 0.19 -5.59 16 5 C -0.03 -0.95 4.88 -20.12 -0.10 -1.05 16 6 C 0.09 2.73 5.09 85.56 0.44 3.17 16 7 N -0.54 -19.88 4.65 -900.92 -4.19 -24.06 16 8 C 0.07 2.30 5.13 86.32 0.44 2.75 16 9 C -0.11 -4.43 6.09 30.64 0.19 -4.24 16 10 C -0.10 -5.04 5.02 30.67 0.15 -4.88 16 11 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 12 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 13 C -0.54 -29.94 8.56 25.60 0.22 -29.72 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.76 5.30 84.65 0.45 1.21 16 16 N -0.92 -53.88 11.35 21.45 0.24 -53.63 16 17 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.08 3.50 4.68 86.32 0.40 3.90 16 22 C -0.14 -3.71 7.52 22.34 0.17 -3.54 16 23 C -0.03 -0.83 5.74 -21.30 -0.12 -0.95 16 24 C -0.12 -2.40 9.77 22.34 0.22 -2.18 16 25 C -0.11 -1.70 9.95 22.04 0.22 -1.48 16 26 C -0.13 -2.19 9.95 22.05 0.22 -1.97 16 27 C -0.10 -2.19 9.56 22.31 0.21 -1.98 16 28 C -0.09 -2.43 5.75 -21.23 -0.12 -2.55 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.03 7.65 -2.39 -0.02 1.01 16 32 H 0.13 3.44 6.21 -2.91 -0.02 3.42 16 33 H 0.05 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.08 2.37 7.92 -2.39 -0.02 2.35 16 35 H 0.08 2.61 5.74 -2.39 -0.01 2.60 16 36 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 2.40 8.14 -2.38 -0.02 2.39 16 39 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 40 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.06 2.49 8.01 -2.38 -0.02 2.47 16 44 H 0.14 3.06 7.91 -2.91 -0.02 3.04 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.13 2.64 7.62 -2.91 -0.02 2.62 16 Total: -1.00 -65.93 377.08 2.55 -63.39 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.94 Total: 18.24 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 4.41 Total: -41.18 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.94 Total: -77.70 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.89 Total: -8.69 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.93 2.55 -63.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.993 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds