Wall clock time and date at job start Tue Mar 31 2020 14:36:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35884 * 116.99478 * 2 1
4 4 C 1.36609 * 119.57255 * 359.97438 * 3 2 1
5 5 C 1.40410 * 119.62288 * 180.02562 * 4 3 2
6 6 C 1.40585 * 121.23758 * 180.02562 * 5 4 3
7 7 C 1.36087 * 119.65366 * 179.97438 * 6 5 4
8 8 C 1.39376 * 120.99060 * 0.02562 * 7 6 5
9 9 C 1.36096 * 120.99790 * 0.02562 * 8 7 6
10 10 C 1.40534 * 119.67285 * 359.95356 * 9 8 7
11 11 C 1.40550 * 121.22748 * 180.30077 * 10 9 8
12 12 C 1.36015 * 119.73180 * 180.27306 * 11 10 9
13 13 C 1.50701 * 119.53683 * 179.77522 * 12 11 10
14 14 N 1.46896 * 109.47043 * 259.72552 * 13 12 11
15 15 C 1.46850 * 111.00472 * 66.04154 * 14 13 12
16 16 C 1.53036 * 109.52384 * 185.84130 * 15 14 13
17 17 C 1.53114 * 109.27799 * 300.81924 * 16 15 14
18 18 C 1.53120 * 109.16161 * 57.65854 * 17 16 15
19 19 H 1.08998 * 109.50493 * 62.28140 * 18 17 16
20 20 C 1.50699 * 109.50204 * 182.40736 * 18 17 16
21 21 H 1.08000 * 120.00193 * 120.00336 * 20 18 17
22 22 C 1.37879 * 119.99808 * 299.99151 * 20 18 17
23 23 N 1.31517 * 119.99723 * 0.02562 * 22 20 18
24 24 Si 1.86805 * 120.00081 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.46981 * 0.02562 * 24 22 20
26 26 H 1.48499 * 109.46760 * 120.00106 * 24 22 20
27 27 H 1.48494 * 109.47157 * 240.00681 * 24 22 20
28 28 C 1.46846 * 110.99998 * 190.25565 * 14 13 12
29 29 H 1.08997 * 109.47055 * 299.99772 * 1 2 3
30 30 H 1.08993 * 109.47317 * 60.00025 * 1 2 3
31 31 H 1.09005 * 109.46574 * 180.02562 * 1 2 3
32 32 H 1.07996 * 120.18431 * 359.97438 * 4 3 2
33 33 H 1.07994 * 120.17399 * 0.02562 * 6 5 4
34 34 H 1.07999 * 119.50538 * 180.02562 * 7 6 5
35 35 H 1.08004 * 119.50246 * 179.97438 * 8 7 6
36 36 H 1.08001 * 120.16635 * 179.97438 * 9 8 7
37 37 H 1.07996 * 120.13133 * 0.03247 * 11 10 9
38 38 H 1.08999 * 109.47078 * 139.71799 * 13 12 11
39 39 H 1.09003 * 109.46796 * 19.72166 * 13 12 11
40 40 H 1.08995 * 109.45831 * 65.81919 * 15 14 13
41 41 H 1.08998 * 109.45719 * 305.85769 * 15 14 13
42 42 H 1.09004 * 109.50109 * 60.76189 * 16 15 14
43 43 H 1.08997 * 109.49831 * 180.87683 * 16 15 14
44 44 H 1.08995 * 109.52025 * 177.56309 * 17 16 15
45 45 H 1.09001 * 109.52508 * 297.68584 * 17 16 15
46 46 H 0.97006 * 119.99407 * 179.97438 * 23 22 20
47 47 H 1.08993 * 109.46639 * 54.13954 * 28 14 13
48 48 H 1.09010 * 109.45973 * 294.17120 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0458 1.2108 0.0000
4 6 1.2932 2.3508 -0.0005
5 6 1.9294 3.6025 -0.0011
6 6 1.1882 4.7971 -0.0011
7 6 1.8381 5.9927 -0.0011
8 6 3.2306 6.0526 -0.0016
9 6 3.9810 4.9172 -0.0027
10 6 3.3459 3.6636 -0.0022
11 6 4.0887 2.4704 0.0030
12 6 3.4426 1.2735 -0.0023
13 6 4.2435 -0.0031 -0.0018
14 7 4.3001 -0.5461 -1.3655
15 6 5.0594 0.3423 -2.2547
16 6 4.9747 -0.1780 -3.6915
17 6 5.5451 -1.5977 -3.7494
18 6 4.7682 -2.4915 -2.7787
19 1 3.7236 -2.5406 -3.0860
20 6 5.3614 -3.8768 -2.7858
21 1 5.7601 -4.2982 -1.8749
22 6 5.3949 -4.6063 -3.9553
23 7 4.9096 -4.0930 -5.0647
24 14 6.1296 -6.3238 -3.9640
25 1 6.6023 -6.6669 -2.5987
26 1 5.0965 -7.3018 -4.3901
27 1 7.2733 -6.3681 -4.9100
28 6 4.8588 -1.9041 -1.3684
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 0.2149 2.2896 -0.0014
33 1 0.1087 4.7661 -0.0003
34 1 1.2664 6.9090 -0.0007
35 1 3.7216 7.0146 -0.0020
36 1 5.0592 4.9793 -0.0035
37 1 5.1681 2.5039 0.0074
38 1 3.7696 -0.7289 0.6590
39 1 5.2546 0.2025 0.3497
40 1 6.1021 0.3679 -1.9385
41 1 4.6409 1.3476 -2.2072
42 1 3.9333 -0.1907 -4.0131
43 1 5.5513 0.4730 -4.3487
44 1 5.4472 -1.9885 -4.7622
45 1 6.5976 -1.5794 -3.4662
46 1 4.9335 -4.6062 -5.8875
47 1 4.2947 -2.5304 -0.6773
48 1 5.9026 -1.8681 -1.0564
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597178509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:36:59
Heat of formation + Delta-G solvation = 1.980017 kcal
Electronic energy + Delta-G solvation = -27638.635381 eV
Core-core repulsion = 24044.031432 eV
Total energy + Delta-G solvation = -3594.603949 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.78855 -38.81510 -38.13652 -35.86599 -33.74292 -32.62351 -31.83992 -30.24122
-29.66875 -28.90303 -27.36309 -25.87831 -24.86996 -22.83019 -22.58005 -21.96082
-21.58362 -20.79287 -18.53254 -18.30493 -17.17558 -16.66901 -16.25145 -15.70847
-15.30453 -15.03928 -14.85258 -14.64735 -14.47499 -14.03908 -13.65748 -13.51152
-13.43311 -13.14267 -13.11518 -12.58590 -12.45584 -12.27464 -11.88507 -11.82762
-11.76472 -11.62841 -11.24788 -11.00676 -10.93411 -10.77958 -10.66289 -10.52117
-10.44574 -10.03563 -9.87952 -9.77541 -9.40962 -8.99126 -8.63376 -8.26263
-8.21554 -7.75120 -7.53926 -5.92869 -3.98699 0.50096 1.03691 2.01660
2.93689 3.32391 3.35950 3.40352 3.44143 4.05766 4.45211 4.50658
4.70803 4.74383 4.84922 4.92234 5.03036 5.08734 5.17078 5.18154
5.23291 5.36014 5.37153 5.53019 5.59821 5.62584 5.73467 5.82716
5.91242 5.93251 5.98617 6.00571 6.15786 6.22463 6.33674 6.38380
6.45720 6.49554 6.53653 6.60953 6.69942 6.79898 6.82320 6.87734
7.04736 7.29237 7.45541 7.48170 7.75912 7.80953 7.90420 8.15706
8.23994 8.54112 9.05804 9.65237 11.13032
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.020791 B = 0.002950 C = 0.002762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.390317 B = 9487.735104 C =10136.109837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.295 6.295
3 C 0.167 3.833
4 C -0.227 4.227
5 C -0.012 4.012
6 C -0.119 4.119
7 C -0.111 4.111
8 C -0.137 4.137
9 C -0.091 4.091
10 C -0.081 4.081
11 C -0.072 4.072
12 C -0.078 4.078
13 C 0.097 3.903
14 N -0.527 5.527
15 C 0.061 3.939
16 C -0.116 4.116
17 C -0.110 4.110
18 C 0.056 3.944
19 H 0.034 0.966
20 C -0.512 4.512
21 H 0.053 0.947
22 C 0.062 3.938
23 N -0.888 5.888
24 Si 0.889 3.111
25 H -0.274 1.274
26 H -0.285 1.285
27 H -0.285 1.285
28 C 0.070 3.930
29 H 0.051 0.949
30 H 0.055 0.945
31 H 0.100 0.900
32 H 0.130 0.870
33 H 0.122 0.878
34 H 0.118 0.882
35 H 0.119 0.881
36 H 0.124 0.876
37 H 0.132 0.868
38 H 0.084 0.916
39 H 0.035 0.965
40 H 0.021 0.979
41 H 0.058 0.942
42 H 0.059 0.941
43 H 0.044 0.956
44 H 0.090 0.910
45 H 0.029 0.971
46 H 0.258 0.742
47 H 0.059 0.941
48 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.840 18.233 11.199 22.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.206 6.206
3 C 0.121 3.879
4 C -0.246 4.246
5 C -0.013 4.013
6 C -0.137 4.137
7 C -0.129 4.129
8 C -0.156 4.156
9 C -0.109 4.109
10 C -0.081 4.081
11 C -0.091 4.091
12 C -0.079 4.079
13 C -0.031 4.031
14 N -0.251 5.251
15 C -0.067 4.067
16 C -0.154 4.154
17 C -0.148 4.148
18 C 0.037 3.963
19 H 0.052 0.948
20 C -0.551 4.551
21 H 0.072 0.928
22 C -0.139 4.139
23 N -0.527 5.527
24 Si 0.717 3.283
25 H -0.199 1.199
26 H -0.211 1.211
27 H -0.212 1.212
28 C -0.056 4.056
29 H 0.069 0.931
30 H 0.073 0.927
31 H 0.119 0.881
32 H 0.148 0.852
33 H 0.140 0.860
34 H 0.136 0.864
35 H 0.137 0.863
36 H 0.142 0.858
37 H 0.149 0.851
38 H 0.102 0.898
39 H 0.053 0.947
40 H 0.039 0.961
41 H 0.076 0.924
42 H 0.077 0.923
43 H 0.063 0.937
44 H 0.108 0.892
45 H 0.048 0.952
46 H 0.068 0.932
47 H 0.078 0.922
48 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -7.260 17.922 10.835 22.165
hybrid contribution 0.934 -0.663 0.157 1.156
sum -6.326 17.260 10.992 21.418
Atomic orbital electron populations
1.23064 0.78850 1.04067 1.00853 1.86234 1.20782 1.26267 1.87365
1.18509 0.91601 0.84359 0.93470 1.20919 0.99751 0.91393 1.12520
1.17754 0.92330 0.93101 0.98066 1.20929 0.99397 0.91718 1.01684
1.20792 0.94607 0.97683 0.99845 1.20739 0.93991 0.98308 1.02518
1.20991 0.99658 0.91546 0.98665 1.18002 0.92626 0.93676 1.03837
1.20817 0.99559 0.90401 0.98289 1.19055 0.90828 0.95844 1.02204
1.20918 0.96545 0.93053 0.92561 1.61966 1.53899 1.03219 1.05997
1.22063 0.94446 0.95652 0.94498 1.21654 1.01131 0.98856 0.93727
1.21646 0.97191 0.91569 1.04397 1.18652 0.96910 0.92684 0.88027
0.94780 1.21197 1.39283 0.99663 0.94936 0.92827 1.24937 0.95434
0.97831 0.95696 1.69913 1.46210 1.36984 0.99622 0.86588 0.78860
0.84886 0.77949 1.19876 1.21093 1.21151 1.22303 0.95396 0.86414
1.01535 0.93092 0.92663 0.88113 0.85204 0.86014 0.86364 0.86334
0.85791 0.85065 0.89806 0.94711 0.96116 0.92378 0.92252 0.93720
0.89192 0.95248 0.93191 0.92215 0.96438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 9.80 101.05 0.99 1.27 16
2 O -0.29 -4.40 9.66 -19.38 -0.19 -4.59 16
3 C 0.17 2.45 6.63 -39.58 -0.26 2.19 16
4 C -0.23 -2.91 8.74 -39.35 -0.34 -3.25 16
5 C -0.01 -0.16 5.74 -106.84 -0.61 -0.77 16
6 C -0.12 -1.26 9.77 -39.47 -0.39 -1.65 16
7 C -0.11 -1.06 9.95 -39.93 -0.40 -1.45 16
8 C -0.14 -1.32 9.95 -39.93 -0.40 -1.72 16
9 C -0.09 -0.97 9.77 -39.49 -0.39 -1.36 16
10 C -0.08 -1.04 5.74 -106.81 -0.61 -1.65 16
11 C -0.07 -0.94 8.22 -39.51 -0.32 -1.27 16
12 C -0.08 -1.16 4.58 -104.83 -0.48 -1.64 16
13 C 0.10 1.56 4.72 -4.98 -0.02 1.54 16
14 N -0.53 -10.10 4.65 -236.11 -1.10 -11.20 16
15 C 0.06 1.13 5.25 -3.83 -0.02 1.11 16
16 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16
17 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16
18 C 0.06 1.43 2.27 -91.69 -0.21 1.22 16
19 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16
20 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16
21 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16
22 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
23 N -0.89 -25.63 11.35 55.43 0.63 -25.00 16
24 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16
25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
28 C 0.07 1.53 4.68 -3.83 -0.02 1.51 16
29 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16
30 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16
31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.13 1.36 6.19 -52.49 -0.32 1.04 16
33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16
34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16
35 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16
36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
37 H 0.13 1.50 7.99 -52.49 -0.42 1.08 16
38 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16
39 H 0.03 0.52 7.93 -51.93 -0.41 0.11 16
40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
41 H 0.06 0.99 6.31 -51.93 -0.33 0.67 16
42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
44 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16
45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
47 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16
48 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16
LS Contribution 378.07 15.07 5.70 5.70
Total: -1.00 -30.60 378.07 -11.75 -42.35
By element:
Atomic # 1 Polarization: 8.02 SS G_CDS: -7.60 Total: 0.42 kcal
Atomic # 6 Polarization: -19.93 SS G_CDS: -4.17 Total: -24.10 kcal
Atomic # 7 Polarization: -35.73 SS G_CDS: -0.47 Total: -36.20 kcal
Atomic # 8 Polarization: -4.40 SS G_CDS: -0.19 Total: -4.59 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -30.60 -11.75 -42.35 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597178509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.326 kcal
(2) G-P(sol) polarization free energy of solvation -30.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.980 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds