Wall clock time and date at job start Tue Mar 31 2020 14:36:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35884 * 116.99478 * 2 1
4 4 C 1.36609 * 119.57255 * 359.97438 * 3 2 1
5 5 C 1.40410 * 119.62288 * 180.02562 * 4 3 2
6 6 C 1.40585 * 121.23758 * 180.02562 * 5 4 3
7 7 C 1.36087 * 119.65366 * 179.97438 * 6 5 4
8 8 C 1.39376 * 120.99060 * 0.02562 * 7 6 5
9 9 C 1.36096 * 120.99790 * 0.02562 * 8 7 6
10 10 C 1.40534 * 119.67285 * 359.95356 * 9 8 7
11 11 C 1.40550 * 121.22748 * 180.30077 * 10 9 8
12 12 C 1.36015 * 119.73180 * 180.27306 * 11 10 9
13 13 C 1.50701 * 119.53683 * 179.77522 * 12 11 10
14 14 N 1.46896 * 109.47043 * 259.72552 * 13 12 11
15 15 C 1.46850 * 111.00472 * 66.04154 * 14 13 12
16 16 C 1.53036 * 109.52384 * 185.84130 * 15 14 13
17 17 C 1.53114 * 109.27799 * 300.81924 * 16 15 14
18 18 C 1.53120 * 109.16161 * 57.65854 * 17 16 15
19 19 H 1.08998 * 109.50493 * 62.28140 * 18 17 16
20 20 C 1.50699 * 109.50204 * 182.40736 * 18 17 16
21 21 H 1.08000 * 120.00193 * 120.00336 * 20 18 17
22 22 C 1.37879 * 119.99808 * 299.99151 * 20 18 17
23 23 N 1.31517 * 119.99723 * 0.02562 * 22 20 18
24 24 Si 1.86805 * 120.00081 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.46981 * 0.02562 * 24 22 20
26 26 H 1.48499 * 109.46760 * 120.00106 * 24 22 20
27 27 H 1.48494 * 109.47157 * 240.00681 * 24 22 20
28 28 C 1.46846 * 110.99998 * 190.25565 * 14 13 12
29 29 H 1.08997 * 109.47055 * 299.99772 * 1 2 3
30 30 H 1.08993 * 109.47317 * 60.00025 * 1 2 3
31 31 H 1.09005 * 109.46574 * 180.02562 * 1 2 3
32 32 H 1.07996 * 120.18431 * 359.97438 * 4 3 2
33 33 H 1.07994 * 120.17399 * 0.02562 * 6 5 4
34 34 H 1.07999 * 119.50538 * 180.02562 * 7 6 5
35 35 H 1.08004 * 119.50246 * 179.97438 * 8 7 6
36 36 H 1.08001 * 120.16635 * 179.97438 * 9 8 7
37 37 H 1.07996 * 120.13133 * 0.03247 * 11 10 9
38 38 H 1.08999 * 109.47078 * 139.71799 * 13 12 11
39 39 H 1.09003 * 109.46796 * 19.72166 * 13 12 11
40 40 H 1.08995 * 109.45831 * 65.81919 * 15 14 13
41 41 H 1.08998 * 109.45719 * 305.85769 * 15 14 13
42 42 H 1.09004 * 109.50109 * 60.76189 * 16 15 14
43 43 H 1.08997 * 109.49831 * 180.87683 * 16 15 14
44 44 H 1.08995 * 109.52025 * 177.56309 * 17 16 15
45 45 H 1.09001 * 109.52508 * 297.68584 * 17 16 15
46 46 H 0.97006 * 119.99407 * 179.97438 * 23 22 20
47 47 H 1.08993 * 109.46639 * 54.13954 * 28 14 13
48 48 H 1.09010 * 109.45973 * 294.17120 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0458 1.2108 0.0000
4 6 1.2932 2.3508 -0.0005
5 6 1.9294 3.6025 -0.0011
6 6 1.1882 4.7971 -0.0011
7 6 1.8381 5.9927 -0.0011
8 6 3.2306 6.0526 -0.0016
9 6 3.9810 4.9172 -0.0027
10 6 3.3459 3.6636 -0.0022
11 6 4.0887 2.4704 0.0030
12 6 3.4426 1.2735 -0.0023
13 6 4.2435 -0.0031 -0.0018
14 7 4.3001 -0.5461 -1.3655
15 6 5.0594 0.3423 -2.2547
16 6 4.9747 -0.1780 -3.6915
17 6 5.5451 -1.5977 -3.7494
18 6 4.7682 -2.4915 -2.7787
19 1 3.7236 -2.5406 -3.0860
20 6 5.3614 -3.8768 -2.7858
21 1 5.7601 -4.2982 -1.8749
22 6 5.3949 -4.6063 -3.9553
23 7 4.9096 -4.0930 -5.0647
24 14 6.1296 -6.3238 -3.9640
25 1 6.6023 -6.6669 -2.5987
26 1 5.0965 -7.3018 -4.3901
27 1 7.2733 -6.3681 -4.9100
28 6 4.8588 -1.9041 -1.3684
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 0.2149 2.2896 -0.0014
33 1 0.1087 4.7661 -0.0003
34 1 1.2664 6.9090 -0.0007
35 1 3.7216 7.0146 -0.0020
36 1 5.0592 4.9793 -0.0035
37 1 5.1681 2.5039 0.0074
38 1 3.7696 -0.7289 0.6590
39 1 5.2546 0.2025 0.3497
40 1 6.1021 0.3679 -1.9385
41 1 4.6409 1.3476 -2.2072
42 1 3.9333 -0.1907 -4.0131
43 1 5.5513 0.4730 -4.3487
44 1 5.4472 -1.9885 -4.7622
45 1 6.5976 -1.5794 -3.4662
46 1 4.9335 -4.6062 -5.8875
47 1 4.2947 -2.5304 -0.6773
48 1 5.9026 -1.8681 -1.0564
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597178509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:36:58
Heat of formation + Delta-G solvation = -13.825770 kcal
Electronic energy + Delta-G solvation = -27639.320772 eV
Core-core repulsion = 24044.031432 eV
Total energy + Delta-G solvation = -3595.289339 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = -0.09 seconds
Orbital eigenvalues (eV)
-41.72687 -39.83584 -39.58840 -36.97136 -35.40352 -33.86623 -33.21985 -31.74101
-31.16155 -29.81409 -28.21792 -27.13109 -26.89515 -23.98842 -23.66685 -23.29640
-22.80167 -22.16795 -20.33483 -19.21861 -18.45304 -18.04744 -17.52073 -16.87057
-16.60377 -16.25371 -16.10284 -15.87635 -15.53116 -15.43250 -15.04950 -14.89127
-14.51916 -14.40362 -14.24356 -13.98457 -13.94032 -13.69105 -13.33068 -13.02871
-12.86670 -12.74653 -12.62687 -12.56228 -12.49330 -12.38077 -11.91234 -11.84590
-11.72057 -11.61898 -11.38265 -11.31265 -10.85402 -10.76187 -10.64531 -10.37151
-9.21216 -9.01671 -8.62246 -8.06757 -6.20985 -0.37176 0.14138 1.14514
1.40531 1.41909 1.53618 2.03986 2.43688 2.46413 3.09939 3.19945
3.34031 3.66540 3.74195 4.04661 4.07298 4.15978 4.19772 4.25082
4.28660 4.34723 4.40875 4.41820 4.44588 4.53079 4.55175 4.63182
4.70745 4.74460 4.77334 4.79435 4.89778 4.97345 4.98867 5.09937
5.11447 5.16070 5.19631 5.33248 5.38567 5.47835 5.54569 5.64594
5.66635 5.67503 5.79938 5.97978 6.10768 6.14586 6.22843 6.36958
6.48305 6.54608 6.91885 7.46723 8.98100
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.020791 B = 0.002950 C = 0.002762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.390317 B = 9487.735104 C =10136.109837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.326 6.326
3 C 0.144 3.856
4 C -0.225 4.225
5 C -0.031 4.031
6 C -0.131 4.131
7 C -0.108 4.108
8 C -0.136 4.136
9 C -0.101 4.101
10 C -0.100 4.100
11 C -0.066 4.066
12 C -0.103 4.103
13 C 0.104 3.896
14 N -0.538 5.538
15 C 0.069 3.931
16 C -0.109 4.109
17 C -0.102 4.102
18 C 0.056 3.944
19 H -0.008 1.008
20 C -0.534 4.534
21 H 0.052 0.948
22 C 0.013 3.987
23 N -0.916 5.916
24 Si 0.955 3.045
25 H -0.267 1.267
26 H -0.281 1.281
27 H -0.280 1.280
28 C 0.085 3.915
29 H 0.071 0.929
30 H 0.059 0.941
31 H 0.108 0.892
32 H 0.147 0.853
33 H 0.140 0.860
34 H 0.147 0.853
35 H 0.146 0.854
36 H 0.143 0.857
37 H 0.147 0.853
38 H 0.075 0.925
39 H 0.048 0.952
40 H 0.030 0.970
41 H 0.077 0.923
42 H 0.042 0.958
43 H 0.068 0.932
44 H 0.057 0.943
45 H 0.025 0.975
46 H 0.260 0.740
47 H 0.053 0.947
48 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.592 20.684 12.154 24.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.239 6.239
3 C 0.097 3.903
4 C -0.244 4.244
5 C -0.031 4.031
6 C -0.149 4.149
7 C -0.125 4.125
8 C -0.153 4.153
9 C -0.119 4.119
10 C -0.100 4.100
11 C -0.085 4.085
12 C -0.104 4.104
13 C -0.023 4.023
14 N -0.262 5.262
15 C -0.058 4.058
16 C -0.147 4.147
17 C -0.140 4.140
18 C 0.037 3.963
19 H 0.011 0.989
20 C -0.572 4.572
21 H 0.070 0.930
22 C -0.186 4.186
23 N -0.556 5.556
24 Si 0.781 3.219
25 H -0.191 1.191
26 H -0.207 1.207
27 H -0.205 1.205
28 C -0.042 4.042
29 H 0.089 0.911
30 H 0.077 0.923
31 H 0.126 0.874
32 H 0.165 0.835
33 H 0.158 0.842
34 H 0.165 0.835
35 H 0.164 0.836
36 H 0.161 0.839
37 H 0.164 0.836
38 H 0.093 0.907
39 H 0.066 0.934
40 H 0.048 0.952
41 H 0.095 0.905
42 H 0.061 0.939
43 H 0.087 0.913
44 H 0.076 0.924
45 H 0.044 0.956
46 H 0.069 0.931
47 H 0.072 0.928
48 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -7.018 20.389 11.805 24.583
hybrid contribution 0.778 -1.268 -0.129 1.493
sum -6.240 19.122 11.677 23.258
Atomic orbital electron populations
1.23269 0.77119 1.04998 1.01998 1.86176 1.22829 1.27059 1.87820
1.18694 0.91894 0.84762 0.94903 1.21131 1.00600 0.91059 1.11566
1.18071 0.92826 0.93807 0.98412 1.21204 1.00476 0.91397 1.01834
1.21212 0.94990 0.98418 0.97928 1.21154 0.94233 0.99188 1.00758
1.21263 1.00882 0.91060 0.98721 1.18255 0.92928 0.94381 1.04414
1.20997 1.00329 0.90064 0.97101 1.18998 0.91050 0.95539 1.04772
1.20843 0.97486 0.93654 0.90315 1.61861 1.53853 1.02217 1.08311
1.21988 0.95051 0.96069 0.92711 1.21564 1.00131 0.96953 0.96037
1.21444 0.96884 0.93661 1.01997 1.18552 0.94304 0.92825 0.90621
0.98938 1.21545 1.39586 1.01047 0.95042 0.93014 1.25738 0.95797
1.01733 0.95308 1.70059 1.46984 1.38411 1.00109 0.85551 0.78100
0.80051 0.78207 1.19131 1.20681 1.20546 1.21954 0.95407 0.88083
0.98776 0.91075 0.92267 0.87409 0.83501 0.84188 0.83499 0.83588
0.83942 0.83576 0.90700 0.93363 0.95176 0.90476 0.93865 0.91329
0.92409 0.95626 0.93116 0.92821 0.96408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.43 9.80 113.37 1.11 1.54 16
2 O -0.33 -9.99 9.66 -92.24 -0.89 -10.88 16
3 C 0.14 4.22 6.63 22.27 0.15 4.37 16
4 C -0.22 -5.59 8.74 22.42 0.20 -5.39 16
5 C -0.03 -0.74 5.74 -21.30 -0.12 -0.86 16
6 C -0.13 -2.44 9.77 22.34 0.22 -2.22 16
7 C -0.11 -1.66 9.95 22.04 0.22 -1.44 16
8 C -0.14 -2.10 9.95 22.05 0.22 -1.88 16
9 C -0.10 -1.89 9.77 22.33 0.22 -1.67 16
10 C -0.10 -2.37 5.74 -21.28 -0.12 -2.49 16
11 C -0.07 -1.66 8.22 22.32 0.18 -1.47 16
12 C -0.10 -3.01 4.58 -20.00 -0.09 -3.10 16
13 C 0.10 3.35 4.72 85.56 0.40 3.75 16
14 N -0.54 -20.86 4.65 -900.93 -4.19 -25.05 16
15 C 0.07 2.51 5.25 86.32 0.45 2.96 16
16 C -0.11 -4.48 6.09 30.64 0.19 -4.30 16
17 C -0.10 -5.07 5.02 30.67 0.15 -4.92 16
18 C 0.06 2.96 2.27 -11.49 -0.03 2.94 16
19 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16
20 C -0.53 -30.45 8.56 25.60 0.22 -30.23 16
21 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16
22 C 0.01 0.73 5.30 84.65 0.45 1.18 16
23 N -0.92 -54.48 11.35 21.45 0.24 -54.23 16
24 Si 0.96 44.61 29.54 68.60 2.03 46.63 16
25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
28 C 0.09 3.81 4.68 86.33 0.40 4.21 16
29 H 0.07 1.15 7.63 -2.39 -0.02 1.13 16
30 H 0.06 1.15 7.63 -2.39 -0.02 1.13 16
31 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16
32 H 0.15 2.92 6.19 -2.91 -0.02 2.91 16
33 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16
34 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16
35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16
36 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16
37 H 0.15 3.04 7.99 -2.91 -0.02 3.02 16
38 H 0.07 2.50 7.66 -2.39 -0.02 2.48 16
39 H 0.05 1.40 7.93 -2.39 -0.02 1.38 16
40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.08 2.52 6.31 -2.39 -0.02 2.51 16
42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16
43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
44 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16
45 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16
46 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16
47 H 0.05 2.41 8.01 -2.39 -0.02 2.39 16
48 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16
Total: -1.00 -68.19 378.07 2.55 -65.64
By element:
Atomic # 1 Polarization: 15.98 SS G_CDS: 0.93 Total: 16.91 kcal
Atomic # 6 Polarization: -43.45 SS G_CDS: 4.42 Total: -39.03 kcal
Atomic # 7 Polarization: -75.34 SS G_CDS: -3.94 Total: -79.28 kcal
Atomic # 8 Polarization: -9.99 SS G_CDS: -0.89 Total: -10.88 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal
Total: -68.19 2.55 -65.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597178509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.812 kcal
(2) G-P(sol) polarization free energy of solvation -68.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = -0.08 seconds