Wall clock time and date at job start Tue Mar 31 2020 16:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 125.89908 * 2 1 4 4 N 1.40087 * 108.20864 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03442 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46887 * 90.02773 * 5 4 3 7 7 C 1.38234 * 120.00257 * 89.99927 * 6 5 4 8 8 C 1.38238 * 119.99675 * 180.27927 * 7 6 5 9 9 C 1.38228 * 120.00120 * 359.47825 * 8 7 6 10 10 C 1.38234 * 120.00000 * 0.52176 * 9 8 7 11 11 C 1.38234 * 119.99503 * 270.01528 * 6 5 4 12 12 C 1.34951 * 107.92411 * 0.25908 * 4 3 2 13 13 C 1.50696 * 126.12612 * 179.73585 * 12 4 3 14 14 C 1.35322 * 107.74345 * 359.57970 * 12 4 3 15 15 C 1.50696 * 126.03722 * 180.15850 * 14 12 4 16 16 N 1.46897 * 109.47257 * 270.28393 * 15 14 12 17 17 C 1.47484 * 111.00104 * 265.96929 * 16 15 14 18 18 C 1.53506 * 87.93341 * 221.29672 * 17 16 15 19 19 C 1.50703 * 114.34254 * 139.68525 * 18 17 16 20 20 H 1.07997 * 119.99761 * 266.07618 * 19 18 17 21 21 C 1.37879 * 119.99802 * 86.07803 * 19 18 17 22 22 N 1.31512 * 120.00422 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99760 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46883 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47158 * 119.99661 * 23 21 19 26 26 H 1.48498 * 109.47075 * 239.99655 * 23 21 19 27 27 C 1.47487 * 111.00114 * 170.00228 * 16 15 14 28 28 H 1.09002 * 109.47278 * 90.03306 * 1 2 3 29 29 H 1.09002 * 109.47010 * 210.02872 * 1 2 3 30 30 H 1.08996 * 109.47875 * 330.02712 * 1 2 3 31 31 H 1.08988 * 109.47441 * 330.02156 * 5 4 3 32 32 H 1.09000 * 109.46440 * 210.02078 * 5 4 3 33 33 H 1.08002 * 119.99744 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.99577 * 179.72816 * 8 7 6 35 35 H 1.07999 * 119.99932 * 180.24104 * 9 8 7 36 36 H 1.08001 * 120.00310 * 179.72161 * 10 9 8 37 37 H 1.07997 * 120.00460 * 0.02562 * 11 6 5 38 38 H 1.08996 * 109.46839 * 90.02677 * 13 12 4 39 39 H 1.09000 * 109.46896 * 210.02561 * 13 12 4 40 40 H 1.08994 * 109.46923 * 330.02740 * 13 12 4 41 41 H 1.09001 * 109.47354 * 30.28273 * 15 14 12 42 42 H 1.09003 * 109.47285 * 150.28599 * 15 14 12 43 43 H 1.08997 * 113.47719 * 336.07058 * 17 16 15 44 44 H 1.09003 * 113.47149 * 106.52848 * 17 16 15 45 45 H 1.09001 * 114.17137 * 272.37453 * 18 17 16 46 46 H 0.96992 * 120.00168 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.47002 * 253.47178 * 27 16 15 48 48 H 1.08993 * 113.47391 * 23.93510 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5010 0.0003 6 6 5.1948 1.7986 1.4210 7 6 6.0889 0.9700 2.0729 8 6 6.4559 1.2398 3.3781 9 6 5.9372 2.3442 4.0277 10 6 5.0431 3.1728 3.3758 11 6 4.6720 2.9001 2.0724 12 6 3.6143 -0.7153 -0.0049 13 6 4.8351 -1.5987 -0.0119 14 6 2.3271 -1.1330 0.0007 15 6 1.8600 -2.5657 0.0009 16 7 1.7081 -3.0315 -1.3840 17 6 0.3194 -2.8600 -1.8500 18 6 0.4330 -4.2366 -2.5198 19 6 -0.8016 -5.0918 -2.3954 20 1 -0.8857 -5.8045 -1.5884 21 6 -1.8238 -4.9641 -3.3119 22 7 -1.7216 -4.0958 -4.2943 23 14 -3.3545 -6.0236 -3.1572 24 1 -3.2237 -6.9128 -1.9752 25 1 -4.5454 -5.1518 -2.9920 26 1 -3.5112 -6.8487 -4.3819 27 6 1.4845 -4.4886 -1.4300 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3635 0.8901 0.5134 31 1 4.5562 2.4332 -0.5139 32 1 5.6092 0.9982 -0.5134 33 1 6.4968 0.1091 1.5642 34 1 7.1510 0.5900 3.8889 35 1 6.2269 2.5572 5.0460 36 1 4.6344 4.0332 3.8848 37 1 3.9730 3.5471 1.5633 38 1 5.1320 -1.8162 1.0140 39 1 4.6063 -2.5305 -0.5293 40 1 5.6498 -1.0885 -0.5256 41 1 2.5935 -3.1870 0.5148 42 1 0.9012 -2.6352 0.5148 43 1 -0.4097 -2.8298 -1.0404 44 1 0.1973 -2.0410 -2.5588 45 1 0.8369 -4.2086 -3.5318 46 1 -2.4409 -4.0058 -4.9387 47 1 2.3498 -5.0496 -1.7829 48 1 1.0663 -4.8930 -0.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:11 Heat of formation + Delta-G solvation = 130.201244 kcal Electronic energy + Delta-G solvation = -27044.849670 eV Core-core repulsion = 23488.098562 eV Total energy + Delta-G solvation = -3556.751108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 5.39 seconds Orbital eigenvalues (eV) -41.22062 -39.44627 -38.65064 -34.67912 -32.98557 -32.37979 -31.60446 -31.20137 -29.27079 -28.55974 -26.88815 -25.63886 -24.63857 -24.55513 -22.90863 -22.23638 -21.54651 -19.26908 -19.11737 -18.51106 -17.26791 -16.67009 -16.15596 -15.83105 -15.42298 -15.05609 -14.66273 -14.32252 -14.14749 -13.87589 -13.78330 -13.58309 -13.36060 -13.10395 -13.07050 -12.79103 -12.65274 -12.41939 -12.15513 -11.89707 -11.87105 -11.59447 -11.52223 -11.34812 -11.28094 -11.12561 -10.95518 -10.61366 -10.31577 -9.98739 -9.68628 -9.23529 -9.22258 -9.17228 -8.87044 -8.76694 -8.40584 -7.96213 -7.80151 -6.01181 -4.05316 0.91309 1.10179 2.09611 2.68237 3.05711 3.30074 3.38510 3.41890 3.55702 4.34446 4.39291 4.43683 4.68347 4.71257 4.80926 4.82509 5.06574 5.09491 5.14857 5.22135 5.25194 5.28635 5.33323 5.51196 5.53175 5.62718 5.68543 5.72148 5.77967 5.91399 5.94583 6.07720 6.12395 6.18993 6.20049 6.22384 6.25839 6.35913 6.45215 6.53436 6.61735 6.66496 6.74836 6.85160 7.00732 7.24943 7.25425 7.34454 7.78185 7.97268 8.03303 8.20335 8.43242 8.98186 9.59378 11.08328 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002471 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.035131 B =11326.465015 C =11702.191328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.089 3.911 3 N -0.304 5.304 4 N -0.373 5.373 5 C 0.177 3.823 6 C -0.111 4.111 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.124 4.124 11 C -0.091 4.091 12 C 0.094 3.906 13 C -0.089 4.089 14 C -0.207 4.207 15 C 0.098 3.902 16 N -0.478 5.478 17 C 0.012 3.988 18 C 0.040 3.960 19 C -0.514 4.514 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.007 4.007 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.260 0.740 47 H 0.059 0.941 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.262 12.430 14.095 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 N -0.125 5.125 4 N -0.155 5.155 5 C 0.056 3.944 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.142 4.142 9 C -0.132 4.132 10 C -0.142 4.142 11 C -0.110 4.110 12 C -0.033 4.033 13 C -0.148 4.148 14 C -0.218 4.218 15 C -0.032 4.032 16 N -0.200 5.200 17 C -0.117 4.117 18 C 0.021 3.979 19 C -0.552 4.552 20 H 0.075 0.925 21 C -0.136 4.136 22 N -0.523 5.523 23 Si 0.717 3.283 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.136 4.136 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.896 14.183 13.586 25.908 hybrid contribution -1.499 -1.530 0.638 2.235 sum 15.396 12.653 14.224 24.484 Atomic orbital electron populations 1.20198 0.86941 1.02575 1.03410 1.22166 0.96678 0.90394 0.98495 1.77228 0.86043 1.22501 1.26767 1.48248 1.04741 1.03666 1.58845 1.20391 0.84917 0.95558 0.93548 1.20082 0.98277 0.96352 0.96475 1.21100 0.97225 0.98634 0.95003 1.21141 1.00473 0.97708 0.94839 1.21211 0.97142 0.95028 0.99847 1.21172 0.98152 0.99954 0.94888 1.21109 0.98224 0.96793 0.94831 1.20683 0.96817 0.84144 1.01619 1.20447 0.92817 0.99029 1.02472 1.19578 0.90936 0.95951 1.15379 1.20840 0.99292 0.90312 0.92738 1.68915 1.26334 1.08250 1.16527 1.24027 0.86916 1.01990 0.98778 1.20093 0.92624 0.91334 0.93854 1.21079 1.01293 1.21148 1.11685 0.92452 1.25015 0.98465 0.95181 0.94973 1.69979 1.32836 1.34808 1.14710 0.86595 0.83249 0.80477 0.78023 1.19750 1.21014 1.20995 1.23999 0.99550 0.89472 1.00572 0.90092 0.90586 0.91556 0.88225 0.88430 0.85922 0.85883 0.86041 0.85929 0.85757 0.90920 0.88997 0.91704 0.91861 0.93661 0.92960 0.92219 0.92041 0.92989 0.92251 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.26 36.00 0.37 -0.75 16 2 C 0.09 1.54 7.22 -82.41 -0.59 0.94 16 3 N -0.30 -5.15 12.58 33.67 0.42 -4.73 16 4 N -0.37 -5.39 3.60 -58.31 -0.21 -5.59 16 5 C 0.18 1.86 6.37 -5.19 -0.03 1.83 16 6 C -0.11 -1.12 5.46 -104.62 -0.57 -1.69 16 7 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 8 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 9 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 10 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 11 C -0.09 -0.91 9.70 -39.58 -0.38 -1.30 16 12 C 0.09 1.39 6.93 -82.26 -0.57 0.82 16 13 C -0.09 -0.99 9.53 36.00 0.34 -0.65 16 14 C -0.21 -3.53 5.68 -105.05 -0.60 -4.13 16 15 C 0.10 1.70 4.71 -4.98 -0.02 1.68 16 16 N -0.48 -9.69 6.32 -246.09 -1.55 -11.25 16 17 C 0.01 0.27 7.28 -7.55 -0.05 0.22 16 18 C 0.04 1.00 3.76 -91.24 -0.34 0.66 16 19 C -0.51 -13.93 8.83 -34.44 -0.30 -14.23 16 20 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 21 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 22 N -0.89 -25.64 13.26 55.43 0.74 -24.90 16 23 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.01 -0.15 7.25 -7.54 -0.05 -0.20 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.13 7.26 -51.93 -0.38 0.76 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.97 8.08 -51.94 -0.42 0.55 16 32 H 0.10 0.81 6.98 -51.93 -0.36 0.44 16 33 H 0.12 0.91 7.87 -52.49 -0.41 0.50 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.12 7.79 -51.93 -0.40 0.71 16 40 H 0.06 0.58 7.07 -51.93 -0.37 0.21 16 41 H 0.06 1.01 7.73 -51.93 -0.40 0.60 16 42 H 0.05 0.81 6.42 -51.93 -0.33 0.47 16 43 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 44 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.06 1.71 8.11 -51.93 -0.42 1.28 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -31.62 396.53 -11.79 -43.41 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.64 Total: 1.66 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -4.49 Total: -20.60 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.61 Total: -46.47 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.62 -11.79 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.608 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.40 seconds