Wall clock time and date at job start Tue Mar 31 2020 16:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 125.89908 * 2 1 4 4 N 1.40087 * 108.20864 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03442 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46887 * 90.02773 * 5 4 3 7 7 C 1.38234 * 120.00257 * 89.99927 * 6 5 4 8 8 C 1.38238 * 119.99675 * 180.27927 * 7 6 5 9 9 C 1.38228 * 120.00120 * 359.47825 * 8 7 6 10 10 C 1.38234 * 120.00000 * 0.52176 * 9 8 7 11 11 C 1.38234 * 119.99503 * 270.01528 * 6 5 4 12 12 C 1.34951 * 107.92411 * 0.25908 * 4 3 2 13 13 C 1.50696 * 126.12612 * 179.73585 * 12 4 3 14 14 C 1.35322 * 107.74345 * 359.57970 * 12 4 3 15 15 C 1.50696 * 126.03722 * 180.15850 * 14 12 4 16 16 N 1.46897 * 109.47257 * 270.28393 * 15 14 12 17 17 C 1.47484 * 111.00104 * 265.96929 * 16 15 14 18 18 C 1.53506 * 87.93341 * 221.29672 * 17 16 15 19 19 C 1.50703 * 114.34254 * 139.68525 * 18 17 16 20 20 H 1.07997 * 119.99761 * 266.07618 * 19 18 17 21 21 C 1.37879 * 119.99802 * 86.07803 * 19 18 17 22 22 N 1.31512 * 120.00422 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99760 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46883 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47158 * 119.99661 * 23 21 19 26 26 H 1.48498 * 109.47075 * 239.99655 * 23 21 19 27 27 C 1.47487 * 111.00114 * 170.00228 * 16 15 14 28 28 H 1.09002 * 109.47278 * 90.03306 * 1 2 3 29 29 H 1.09002 * 109.47010 * 210.02872 * 1 2 3 30 30 H 1.08996 * 109.47875 * 330.02712 * 1 2 3 31 31 H 1.08988 * 109.47441 * 330.02156 * 5 4 3 32 32 H 1.09000 * 109.46440 * 210.02078 * 5 4 3 33 33 H 1.08002 * 119.99744 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.99577 * 179.72816 * 8 7 6 35 35 H 1.07999 * 119.99932 * 180.24104 * 9 8 7 36 36 H 1.08001 * 120.00310 * 179.72161 * 10 9 8 37 37 H 1.07997 * 120.00460 * 0.02562 * 11 6 5 38 38 H 1.08996 * 109.46839 * 90.02677 * 13 12 4 39 39 H 1.09000 * 109.46896 * 210.02561 * 13 12 4 40 40 H 1.08994 * 109.46923 * 330.02740 * 13 12 4 41 41 H 1.09001 * 109.47354 * 30.28273 * 15 14 12 42 42 H 1.09003 * 109.47285 * 150.28599 * 15 14 12 43 43 H 1.08997 * 113.47719 * 336.07058 * 17 16 15 44 44 H 1.09003 * 113.47149 * 106.52848 * 17 16 15 45 45 H 1.09001 * 114.17137 * 272.37453 * 18 17 16 46 46 H 0.96992 * 120.00168 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.47002 * 253.47178 * 27 16 15 48 48 H 1.08993 * 113.47391 * 23.93510 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5010 0.0003 6 6 5.1948 1.7986 1.4210 7 6 6.0889 0.9700 2.0729 8 6 6.4559 1.2398 3.3781 9 6 5.9372 2.3442 4.0277 10 6 5.0431 3.1728 3.3758 11 6 4.6720 2.9001 2.0724 12 6 3.6143 -0.7153 -0.0049 13 6 4.8351 -1.5987 -0.0119 14 6 2.3271 -1.1330 0.0007 15 6 1.8600 -2.5657 0.0009 16 7 1.7081 -3.0315 -1.3840 17 6 0.3194 -2.8600 -1.8500 18 6 0.4330 -4.2366 -2.5198 19 6 -0.8016 -5.0918 -2.3954 20 1 -0.8857 -5.8045 -1.5884 21 6 -1.8238 -4.9641 -3.3119 22 7 -1.7216 -4.0958 -4.2943 23 14 -3.3545 -6.0236 -3.1572 24 1 -3.2237 -6.9128 -1.9752 25 1 -4.5454 -5.1518 -2.9920 26 1 -3.5112 -6.8487 -4.3819 27 6 1.4845 -4.4886 -1.4300 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3635 0.8901 0.5134 31 1 4.5562 2.4332 -0.5139 32 1 5.6092 0.9982 -0.5134 33 1 6.4968 0.1091 1.5642 34 1 7.1510 0.5900 3.8889 35 1 6.2269 2.5572 5.0460 36 1 4.6344 4.0332 3.8848 37 1 3.9730 3.5471 1.5633 38 1 5.1320 -1.8162 1.0140 39 1 4.6063 -2.5305 -0.5293 40 1 5.6498 -1.0885 -0.5256 41 1 2.5935 -3.1870 0.5148 42 1 0.9012 -2.6352 0.5148 43 1 -0.4097 -2.8298 -1.0404 44 1 0.1973 -2.0410 -2.5588 45 1 0.8369 -4.2086 -3.5318 46 1 -2.4409 -4.0058 -4.9387 47 1 2.3498 -5.0496 -1.7829 48 1 1.0663 -4.8930 -0.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:07 Heat of formation + Delta-G solvation = 112.322994 kcal Electronic energy + Delta-G solvation = -27045.624929 eV Core-core repulsion = 23488.098562 eV Total energy + Delta-G solvation = -3557.526367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -42.37724 -40.46865 -40.03773 -35.68678 -34.78142 -33.69460 -32.70713 -31.85060 -30.67783 -29.57488 -28.36929 -26.94623 -26.36872 -25.92542 -23.81122 -23.51636 -22.37355 -20.49574 -20.43187 -20.18010 -18.60250 -17.97504 -17.31071 -16.77933 -16.58090 -16.24096 -16.09392 -15.78891 -15.51011 -15.42640 -14.79894 -14.36916 -14.35625 -14.23896 -14.09545 -13.95656 -13.76890 -13.53494 -13.34268 -13.22654 -13.14370 -13.09828 -12.89871 -12.78451 -12.64972 -12.36279 -12.10381 -12.04616 -11.92062 -11.58804 -11.26579 -11.13147 -10.81089 -10.46470 -9.97732 -9.87189 -9.80985 -9.59286 -9.12671 -8.11372 -6.22381 0.21841 0.45133 0.95295 1.43250 1.45082 1.56644 1.70519 1.78045 2.45165 2.87404 3.18024 3.48213 3.58595 3.66705 3.79067 3.90188 4.07788 4.11445 4.20602 4.23226 4.25370 4.33776 4.37582 4.42178 4.56142 4.58917 4.64203 4.64851 4.67638 4.74472 4.77271 4.83316 4.95543 4.98773 4.99752 5.04408 5.07444 5.11012 5.13816 5.31161 5.35873 5.49295 5.56481 5.57539 5.65465 5.67587 5.77216 5.90371 6.03770 6.22371 6.35065 6.51537 6.82916 6.87814 7.45965 8.98450 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002471 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.035131 B =11326.465015 C =11702.191328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.069 3.931 3 N -0.329 5.329 4 N -0.367 5.367 5 C 0.170 3.830 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.134 4.134 11 C -0.110 4.110 12 C 0.103 3.897 13 C -0.088 4.088 14 C -0.243 4.243 15 C 0.105 3.895 16 N -0.475 5.475 17 C 0.029 3.971 18 C 0.020 3.980 19 C -0.525 4.525 20 H 0.061 0.939 21 C 0.013 3.987 22 N -0.924 5.924 23 Si 0.956 3.044 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.010 3.990 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.025 0.975 46 H 0.261 0.739 47 H 0.075 0.925 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.135 11.733 16.154 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 N -0.152 5.152 4 N -0.149 5.149 5 C 0.050 3.950 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.146 4.146 9 C -0.136 4.136 10 C -0.152 4.152 11 C -0.129 4.129 12 C -0.025 4.025 13 C -0.146 4.146 14 C -0.254 4.254 15 C -0.024 4.024 16 N -0.197 5.197 17 C -0.101 4.101 18 C 0.001 3.999 19 C -0.563 4.563 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.782 3.218 24 H -0.186 1.186 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.118 4.118 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.785 13.499 15.661 27.935 hybrid contribution -1.945 -1.222 0.039 2.298 sum 16.840 12.276 15.701 26.092 Atomic orbital electron populations 1.20151 0.86687 1.03300 1.02562 1.22405 0.97303 0.90888 0.99075 1.77156 0.87473 1.22931 1.27639 1.48583 1.04765 1.04161 1.57345 1.20733 0.84188 0.95484 0.94584 1.20069 0.99236 0.96942 0.96215 1.21358 0.96802 0.98878 0.95447 1.21495 1.00509 0.97916 0.94715 1.21557 0.96445 0.94700 1.00881 1.21417 0.98443 1.00731 0.94593 1.21227 0.98747 0.97278 0.95664 1.21229 0.97441 0.84648 0.99219 1.20584 0.91818 0.98000 1.04204 1.19656 0.92095 0.95478 1.18160 1.20774 0.99694 0.91210 0.90679 1.68858 1.24027 1.07811 1.18986 1.23706 0.88747 0.99630 0.97998 1.20041 0.93627 0.92873 0.93399 1.21412 1.02039 1.21220 1.11637 0.92115 1.25836 1.01644 0.96440 0.94692 1.70113 1.33905 1.36562 1.15676 0.85534 0.79267 0.78780 0.78245 1.18620 1.20770 1.20729 1.23817 0.98672 0.90159 0.99202 0.91648 0.90504 0.90167 0.88162 0.85760 0.84112 0.83569 0.83833 0.84598 0.86518 0.88574 0.89827 0.89154 0.89689 0.94226 0.93108 0.94905 0.95670 0.93005 0.90653 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.26 71.23 0.73 -1.45 16 2 C 0.07 2.41 7.22 43.10 0.31 2.72 16 3 N -0.33 -11.23 12.58 -47.39 -0.60 -11.82 16 4 N -0.37 -10.17 3.60 -338.41 -1.22 -11.39 16 5 C 0.17 3.29 6.37 85.63 0.55 3.84 16 6 C -0.12 -2.29 5.46 -19.87 -0.11 -2.40 16 7 C -0.11 -1.61 9.70 22.27 0.22 -1.40 16 8 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 9 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 10 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 11 C -0.11 -2.14 9.70 22.27 0.22 -1.93 16 12 C 0.10 2.88 6.93 41.40 0.29 3.16 16 13 C -0.09 -1.66 9.53 71.23 0.68 -0.98 16 14 C -0.24 -8.10 5.68 -20.14 -0.11 -8.22 16 15 C 0.11 3.57 4.71 85.56 0.40 3.97 16 16 N -0.47 -19.11 6.32 -932.51 -5.89 -25.00 16 17 C 0.03 1.35 7.28 83.57 0.61 1.96 16 18 C 0.02 1.01 3.76 -11.20 -0.04 0.97 16 19 C -0.52 -28.72 8.83 25.60 0.23 -28.50 16 20 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 21 C 0.01 0.72 5.46 84.66 0.46 1.18 16 22 N -0.92 -54.93 13.26 21.45 0.28 -54.64 16 23 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 C 0.01 0.42 7.25 83.57 0.61 1.02 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.37 7.26 -2.39 -0.02 2.35 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.12 1.70 6.98 -2.39 -0.02 1.68 16 33 H 0.14 1.53 7.87 -2.91 -0.02 1.51 16 34 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.78 7.79 -2.39 -0.02 1.76 16 40 H 0.09 1.25 7.07 -2.39 -0.02 1.23 16 41 H 0.08 2.49 7.73 -2.39 -0.02 2.48 16 42 H 0.04 1.39 6.42 -2.39 -0.02 1.37 16 43 H 0.05 2.38 7.38 -2.39 -0.02 2.36 16 44 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 46 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 47 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.06 2.43 7.87 -2.39 -0.02 2.41 16 Total: -1.00 -69.61 396.53 1.24 -68.37 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.94 Total: 19.96 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.70 Total: -30.94 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -7.42 Total: -102.86 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.61 1.24 -68.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.690 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds