Wall clock time and date at job start Tue Mar 31 2020 15:26:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86801 * 119.99699 * 2 1
4 4 H 1.48497 * 109.47307 * 239.99783 * 3 2 1
5 5 H 1.48498 * 109.47071 * 359.97438 * 3 2 1
6 6 H 1.48509 * 109.47184 * 119.99868 * 3 2 1
7 7 C 1.37879 * 120.00235 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99910 * 172.53460 * 7 2 1
9 9 C 1.50695 * 119.99944 * 352.53204 * 7 2 1
10 10 C 1.53000 * 115.55453 * 295.01529 * 9 7 2
11 11 N 1.46900 * 109.47109 * 268.74373 * 10 9 7
12 12 C 1.46841 * 111.00043 * 51.73360 * 11 10 9
13 13 C 1.53038 * 109.52694 * 185.84079 * 12 11 10
14 14 C 1.53127 * 109.27470 * 300.82022 * 13 12 11
15 15 C 1.53124 * 109.16038 * 57.65347 * 14 13 12
16 16 C 1.46846 * 110.99963 * 175.94208 * 11 10 9
17 17 H 1.09004 * 109.45215 * 294.17320 * 16 11 10
18 18 C 1.50704 * 109.46159 * 54.14177 * 16 11 10
19 19 N 1.30109 * 124.94692 * 25.08402 * 18 16 11
20 20 C 1.35791 * 109.64033 * 179.97438 * 19 18 16
21 21 C 1.39740 * 133.59816 * 179.97438 * 20 19 18
22 22 C 1.36603 * 119.88599 * 180.02562 * 21 20 19
23 23 C 1.38778 * 120.66623 * 359.70344 * 22 21 20
24 24 C 1.37851 * 120.45157 * 0.57148 * 23 22 21
25 25 C 1.38830 * 119.69005 * 359.45561 * 24 23 22
26 26 N 1.36035 * 124.95046 * 205.05303 * 18 16 11
27 27 H 0.97000 * 126.35155 * 0.04172 * 26 18 16
28 28 C 1.53006 * 117.51558 * 80.71979 * 9 7 2
29 29 C 1.52999 * 60.00110 * 107.47836 * 28 9 7
30 30 H 0.96999 * 120.00174 * 5.04943 * 1 2 3
31 31 H 1.09000 * 109.47389 * 148.73951 * 10 9 7
32 32 H 1.09000 * 109.46582 * 28.74399 * 10 9 7
33 33 H 1.08997 * 109.46603 * 65.82224 * 12 11 10
34 34 H 1.09001 * 109.45320 * 305.85209 * 12 11 10
35 35 H 1.08992 * 109.50631 * 180.88298 * 13 12 11
36 36 H 1.09001 * 109.50411 * 60.75519 * 13 12 11
37 37 H 1.09000 * 109.52469 * 297.75120 * 14 13 12
38 38 H 1.08997 * 109.52126 * 177.55245 * 14 13 12
39 39 H 1.08999 * 109.50384 * 182.40954 * 15 14 13
40 40 H 1.08993 * 109.53649 * 62.30186 * 15 14 13
41 41 H 1.08003 * 120.05825 * 359.97438 * 21 20 19
42 42 H 1.07994 * 119.66533 * 180.02562 * 22 21 20
43 43 H 1.08003 * 119.77238 * 180.27995 * 23 22 21
44 44 H 1.08004 * 120.15690 * 179.72681 * 24 23 22
45 45 H 1.08996 * 117.49708 * 214.97284 * 28 9 7
46 46 H 1.09005 * 117.49586 * 359.97438 * 28 9 7
47 47 H 1.08996 * 117.49991 * 252.51164 * 29 28 9
48 48 H 1.09002 * 117.51648 * 107.47970 * 29 28 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6965 -1.2124
5 1 1.2840 2.7464 -0.0006
6 1 3.1029 1.6965 1.2126
7 6 2.0046 -1.1940 0.0005
8 1 3.0778 -1.1980 -0.1210
9 6 1.2608 -2.4935 0.1707
10 6 0.5724 -2.6877 1.5233
11 7 1.4900 -3.3688 2.4464
12 6 2.7882 -2.6845 2.4983
13 6 3.7621 -3.4992 3.3525
14 6 3.1889 -3.6540 4.7640
15 6 1.8155 -4.3256 4.6778
16 6 0.8981 -3.4868 3.7851
17 1 0.7789 -2.4936 4.2181
18 6 -0.4490 -4.1543 3.6814
19 7 -0.8111 -4.9574 2.7239
20 6 -2.0839 -5.3790 2.9387
21 6 -2.9478 -6.2289 2.2430
22 6 -4.2045 -6.4644 2.7240
23 6 -4.6334 -5.8721 3.9035
24 6 -3.8003 -5.0257 4.6035
25 6 -2.5198 -4.7743 4.1297
26 7 -1.4633 -4.0055 4.5756
27 1 -1.4474 -3.4603 5.3777
28 6 0.5724 -3.0808 -1.0631
29 6 1.8410 -3.7342 -0.5112
30 1 -0.4850 0.8368 -0.0739
31 1 -0.3248 -3.2923 1.3909
32 1 0.2984 -1.7160 1.9342
33 1 2.6600 -1.6952 2.9374
34 1 3.1866 -2.5847 1.4886
35 1 4.7208 -2.9832 3.4037
36 1 3.9015 -4.4839 2.9064
37 1 3.0858 -2.6717 5.2250
38 1 3.8588 -4.2704 5.3635
39 1 1.3835 -4.3998 5.6757
40 1 1.9237 -5.3234 4.2528
41 1 -2.6229 -6.6982 1.3262
42 1 -4.8691 -7.1222 2.1838
43 1 -5.6284 -6.0718 4.2730
44 1 -4.1406 -4.5639 5.5186
45 1 -0.3709 -3.6054 -0.9112
46 1 0.6572 -2.5270 -1.9981
47 1 2.7606 -3.6104 -1.0832
48 1 1.7327 -4.6887 0.0039
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602840237.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:26:03
Heat of formation + Delta-G solvation = 101.000012 kcal
Electronic energy + Delta-G solvation = -28616.904301 eV
Core-core repulsion = 25058.886932 eV
Total energy + Delta-G solvation = -3558.017369 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.185 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.99867 -38.82315 -37.06078 -36.08845 -33.04704 -32.41294 -31.92441 -31.26187
-29.82862 -28.45968 -26.17252 -25.41453 -23.80296 -22.49402 -22.13373 -21.69739
-20.92968 -20.40335 -19.32190 -18.61365 -17.70581 -17.00144 -16.16219 -15.62721
-15.08456 -14.76950 -14.58143 -14.34350 -14.09654 -13.97857 -13.92036 -13.72703
-13.22678 -13.12004 -12.71312 -12.31733 -12.10076 -11.95064 -11.64539 -11.46152
-11.35613 -11.16347 -10.93085 -10.91633 -10.87051 -10.49939 -10.44407 -10.38914
-10.17975 -9.93922 -9.79392 -9.55882 -9.21355 -8.73200 -8.37976 -8.24615
-8.03219 -7.86397 -7.36151 -5.99471 -4.03818 1.08677 1.63960 2.94289
3.02161 3.28384 3.34131 3.36282 4.03649 4.29826 4.40475 4.51663
4.70365 5.00997 5.07397 5.13296 5.20741 5.25371 5.30609 5.44953
5.53692 5.58168 5.59020 5.61190 5.70382 5.85293 5.91825 6.00614
6.13484 6.15596 6.20782 6.26945 6.38083 6.41251 6.50582 6.59872
6.67507 6.68459 6.73906 6.81783 6.88959 7.00902 7.03877 7.07078
7.27978 7.30660 7.43495 7.61019 7.67956 7.87701 7.99759 8.07968
8.25785 8.53947 8.96433 9.58422 11.07884
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.011956 B = 0.004520 C = 0.003901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2341.434313 B = 6193.379526 C = 7176.834071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.878 5.878
2 C 0.071 3.929
3 Si 0.883 3.117
4 H -0.277 1.277
5 H -0.289 1.289
6 H -0.277 1.277
7 C -0.492 4.492
8 H 0.058 0.942
9 C 0.053 3.947
10 C 0.102 3.898
11 N -0.507 5.507
12 C 0.062 3.938
13 C -0.121 4.121
14 C -0.117 4.117
15 C -0.104 4.104
16 C 0.160 3.840
17 H 0.051 0.949
18 C 0.303 3.697
19 N -0.453 5.453
20 C 0.048 3.952
21 C -0.061 4.061
22 C -0.134 4.134
23 C -0.110 4.110
24 C -0.113 4.113
25 C 0.043 3.957
26 N -0.602 5.602
27 H 0.418 0.582
28 C -0.174 4.174
29 C -0.191 4.191
30 H 0.259 0.741
31 H 0.065 0.935
32 H 0.036 0.964
33 H 0.027 0.973
34 H 0.107 0.893
35 H 0.060 0.940
36 H 0.068 0.932
37 H 0.057 0.943
38 H 0.060 0.940
39 H 0.057 0.943
40 H 0.078 0.922
41 H 0.128 0.872
42 H 0.125 0.875
43 H 0.125 0.875
44 H 0.118 0.882
45 H 0.060 0.940
46 H 0.072 0.928
47 H 0.067 0.933
48 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.375 -9.515 12.358 15.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.514 5.514
2 C -0.132 4.132
3 Si 0.710 3.290
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.202 1.202
7 C -0.530 4.530
8 H 0.077 0.923
9 C 0.052 3.948
10 C -0.024 4.024
11 N -0.232 5.232
12 C -0.065 4.065
13 C -0.159 4.159
14 C -0.154 4.154
15 C -0.142 4.142
16 C 0.049 3.951
17 H 0.069 0.931
18 C 0.036 3.964
19 N -0.172 5.172
20 C -0.071 4.071
21 C -0.080 4.080
22 C -0.155 4.155
23 C -0.129 4.129
24 C -0.134 4.134
25 C -0.068 4.068
26 N -0.213 5.213
27 H 0.256 0.744
28 C -0.213 4.213
29 C -0.229 4.229
30 H 0.069 0.931
31 H 0.083 0.917
32 H 0.054 0.946
33 H 0.045 0.955
34 H 0.125 0.875
35 H 0.079 0.921
36 H 0.087 0.913
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.075 0.925
40 H 0.096 0.904
41 H 0.146 0.854
42 H 0.143 0.857
43 H 0.143 0.857
44 H 0.136 0.864
45 H 0.079 0.921
46 H 0.091 0.909
47 H 0.085 0.915
48 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -2.989 -10.128 11.485 15.602
hybrid contribution -0.431 2.478 1.317 2.839
sum -3.419 -7.651 12.802 15.301
Atomic orbital electron populations
1.69993 1.05838 1.26578 1.49035 1.24967 0.94693 0.98645 0.94892
0.86815 0.79763 0.83674 0.78714 1.20227 1.21442 1.20224 1.20509
0.92949 0.89154 1.50352 0.92349 1.18714 0.97131 0.90773 0.88197
1.21752 0.93559 0.95036 0.92098 1.61963 1.03873 1.53200 1.04192
1.22183 0.88617 0.93543 1.02190 1.21700 0.98204 1.01408 0.94571
1.21563 0.95749 1.00128 0.98007 1.21586 0.95012 1.00218 0.97420
1.20056 0.85660 0.95673 0.93717 0.93123 1.23552 0.91255 0.95871
0.85768 1.70657 1.10379 1.13243 1.22883 1.19298 0.92730 1.00611
0.94413 1.20057 0.92265 0.96465 0.99224 1.20585 0.95891 1.01903
0.97112 1.20792 0.99109 0.97460 0.95559 1.19886 0.90770 1.01640
1.01110 1.18880 0.91053 0.98640 0.98187 1.43063 1.12060 1.41614
1.24602 0.74389 1.22691 0.93935 1.04267 1.00363 1.22749 0.96316
0.97989 1.05810 0.93102 0.91704 0.94603 0.95467 0.87505 0.92087
0.91303 0.92434 0.92080 0.92481 0.90357 0.85398 0.85681 0.85698
0.86417 0.92106 0.90918 0.91482 0.90453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.93 12.68 55.43 0.70 -24.23 16
2 C 0.07 1.92 5.19 -17.82 -0.09 1.82 16
3 Si 0.88 20.80 29.55 -169.99 -5.02 15.78 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16
7 C -0.49 -12.99 7.09 -34.44 -0.24 -13.23 16
8 H 0.06 1.53 7.50 -52.49 -0.39 1.14 16
9 C 0.05 1.30 0.57 -155.66 -0.09 1.21 16
10 C 0.10 2.39 4.48 -3.82 -0.02 2.37 16
11 N -0.51 -9.85 4.23 -228.08 -0.96 -10.82 16
12 C 0.06 1.16 4.68 -3.84 -0.02 1.14 16
13 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16
14 C -0.12 -1.45 6.00 -26.60 -0.16 -1.61 16
15 C -0.10 -1.38 5.36 -26.65 -0.14 -1.53 16
16 C 0.16 2.63 2.38 -68.87 -0.16 2.47 16
17 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
18 C 0.30 5.17 6.11 -154.82 -0.95 4.22 16
19 N -0.45 -8.74 9.28 -8.23 -0.08 -8.81 16
20 C 0.05 0.84 7.23 -84.70 -0.61 0.23 16
21 C -0.06 -0.90 10.05 -39.61 -0.40 -1.30 16
22 C -0.13 -1.61 9.96 -39.97 -0.40 -2.01 16
23 C -0.11 -1.22 10.03 -39.52 -0.40 -1.62 16
24 C -0.11 -1.39 10.07 -39.50 -0.40 -1.78 16
25 C 0.04 0.64 7.31 -83.99 -0.61 0.03 16
26 N -0.60 -8.55 6.23 -8.00 -0.05 -8.60 16
27 H 0.42 4.44 8.96 -40.82 -0.37 4.07 16
28 C -0.17 -4.29 9.88 -26.73 -0.26 -4.56 16
29 C -0.19 -4.35 9.26 -26.73 -0.25 -4.60 16
30 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16
31 H 0.06 1.61 5.64 -51.93 -0.29 1.31 16
32 H 0.04 0.94 7.31 -51.93 -0.38 0.56 16
33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.11 2.25 5.09 -51.93 -0.26 1.99 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
41 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16
42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16
43 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16
44 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16
45 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16
46 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16
47 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16
48 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16
LS Contribution 377.67 15.07 5.69 5.69
Total: -1.00 -30.50 377.67 -12.67 -43.17
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: -7.59 Total: 8.47 kcal
Atomic # 6 Polarization: -15.29 SS G_CDS: -5.36 Total: -20.65 kcal
Atomic # 7 Polarization: -52.07 SS G_CDS: -0.39 Total: -52.46 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -30.50 -12.67 -43.17 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602840237.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.170 kcal
(2) G-P(sol) polarization free energy of solvation -30.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.673 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal
(6) G-S(sol) free energy of system = (1) + (5) 101.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds