Wall clock time and date at job start Tue Mar 31 2020 15:26:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86801 * 119.99699 * 2 1
4 4 H 1.48497 * 109.47307 * 239.99783 * 3 2 1
5 5 H 1.48498 * 109.47071 * 359.97438 * 3 2 1
6 6 H 1.48509 * 109.47184 * 119.99868 * 3 2 1
7 7 C 1.37879 * 120.00235 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99910 * 172.53460 * 7 2 1
9 9 C 1.50695 * 119.99944 * 352.53204 * 7 2 1
10 10 C 1.53000 * 115.55453 * 295.01529 * 9 7 2
11 11 N 1.46900 * 109.47109 * 268.74373 * 10 9 7
12 12 C 1.46841 * 111.00043 * 51.73360 * 11 10 9
13 13 C 1.53038 * 109.52694 * 185.84079 * 12 11 10
14 14 C 1.53127 * 109.27470 * 300.82022 * 13 12 11
15 15 C 1.53124 * 109.16038 * 57.65347 * 14 13 12
16 16 C 1.46846 * 110.99963 * 175.94208 * 11 10 9
17 17 H 1.09004 * 109.45215 * 294.17320 * 16 11 10
18 18 C 1.50704 * 109.46159 * 54.14177 * 16 11 10
19 19 N 1.30109 * 124.94692 * 25.08402 * 18 16 11
20 20 C 1.35791 * 109.64033 * 179.97438 * 19 18 16
21 21 C 1.39740 * 133.59816 * 179.97438 * 20 19 18
22 22 C 1.36603 * 119.88599 * 180.02562 * 21 20 19
23 23 C 1.38778 * 120.66623 * 359.70344 * 22 21 20
24 24 C 1.37851 * 120.45157 * 0.57148 * 23 22 21
25 25 C 1.38830 * 119.69005 * 359.45561 * 24 23 22
26 26 N 1.36035 * 124.95046 * 205.05303 * 18 16 11
27 27 H 0.97000 * 126.35155 * 0.04172 * 26 18 16
28 28 C 1.53006 * 117.51558 * 80.71979 * 9 7 2
29 29 C 1.52999 * 60.00110 * 107.47836 * 28 9 7
30 30 H 0.96999 * 120.00174 * 5.04943 * 1 2 3
31 31 H 1.09000 * 109.47389 * 148.73951 * 10 9 7
32 32 H 1.09000 * 109.46582 * 28.74399 * 10 9 7
33 33 H 1.08997 * 109.46603 * 65.82224 * 12 11 10
34 34 H 1.09001 * 109.45320 * 305.85209 * 12 11 10
35 35 H 1.08992 * 109.50631 * 180.88298 * 13 12 11
36 36 H 1.09001 * 109.50411 * 60.75519 * 13 12 11
37 37 H 1.09000 * 109.52469 * 297.75120 * 14 13 12
38 38 H 1.08997 * 109.52126 * 177.55245 * 14 13 12
39 39 H 1.08999 * 109.50384 * 182.40954 * 15 14 13
40 40 H 1.08993 * 109.53649 * 62.30186 * 15 14 13
41 41 H 1.08003 * 120.05825 * 359.97438 * 21 20 19
42 42 H 1.07994 * 119.66533 * 180.02562 * 22 21 20
43 43 H 1.08003 * 119.77238 * 180.27995 * 23 22 21
44 44 H 1.08004 * 120.15690 * 179.72681 * 24 23 22
45 45 H 1.08996 * 117.49708 * 214.97284 * 28 9 7
46 46 H 1.09005 * 117.49586 * 359.97438 * 28 9 7
47 47 H 1.08996 * 117.49991 * 252.51164 * 29 28 9
48 48 H 1.09002 * 117.51648 * 107.47970 * 29 28 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6965 -1.2124
5 1 1.2840 2.7464 -0.0006
6 1 3.1029 1.6965 1.2126
7 6 2.0046 -1.1940 0.0005
8 1 3.0778 -1.1980 -0.1210
9 6 1.2608 -2.4935 0.1707
10 6 0.5724 -2.6877 1.5233
11 7 1.4900 -3.3688 2.4464
12 6 2.7882 -2.6845 2.4983
13 6 3.7621 -3.4992 3.3525
14 6 3.1889 -3.6540 4.7640
15 6 1.8155 -4.3256 4.6778
16 6 0.8981 -3.4868 3.7851
17 1 0.7789 -2.4936 4.2181
18 6 -0.4490 -4.1543 3.6814
19 7 -0.8111 -4.9574 2.7239
20 6 -2.0839 -5.3790 2.9387
21 6 -2.9478 -6.2289 2.2430
22 6 -4.2045 -6.4644 2.7240
23 6 -4.6334 -5.8721 3.9035
24 6 -3.8003 -5.0257 4.6035
25 6 -2.5198 -4.7743 4.1297
26 7 -1.4633 -4.0055 4.5756
27 1 -1.4474 -3.4603 5.3777
28 6 0.5724 -3.0808 -1.0631
29 6 1.8410 -3.7342 -0.5112
30 1 -0.4850 0.8368 -0.0739
31 1 -0.3248 -3.2923 1.3909
32 1 0.2984 -1.7160 1.9342
33 1 2.6600 -1.6952 2.9374
34 1 3.1866 -2.5847 1.4886
35 1 4.7208 -2.9832 3.4037
36 1 3.9015 -4.4839 2.9064
37 1 3.0858 -2.6717 5.2250
38 1 3.8588 -4.2704 5.3635
39 1 1.3835 -4.3998 5.6757
40 1 1.9237 -5.3234 4.2528
41 1 -2.6229 -6.6982 1.3262
42 1 -4.8691 -7.1222 2.1838
43 1 -5.6284 -6.0718 4.2730
44 1 -4.1406 -4.5639 5.5186
45 1 -0.3709 -3.6054 -0.9112
46 1 0.6572 -2.5270 -1.9981
47 1 2.7606 -3.6104 -1.0832
48 1 1.7327 -4.6887 0.0039
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602840237.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:26:02
Heat of formation + Delta-G solvation = 84.054977 kcal
Electronic energy + Delta-G solvation = -28617.639092 eV
Core-core repulsion = 25058.886932 eV
Total energy + Delta-G solvation = -3558.752161 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.185 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.15136 -40.25847 -38.26452 -37.71759 -34.27942 -34.03516 -33.70336 -32.54951
-30.87406 -29.57674 -27.97479 -27.28056 -25.04177 -23.92127 -23.26421 -22.94164
-22.70617 -21.66766 -20.84172 -20.30906 -18.82185 -18.16368 -18.02063 -16.92402
-16.57135 -16.31414 -15.99482 -15.81162 -15.60384 -15.20964 -15.01234 -14.82412
-14.71181 -14.60914 -14.23601 -13.86649 -13.55523 -13.16922 -13.00010 -12.86455
-12.84875 -12.76415 -12.61235 -12.38913 -12.32515 -12.13252 -11.96342 -11.68817
-11.56072 -11.43950 -11.25975 -11.05935 -10.87711 -10.63842 -10.39845 -9.96327
-9.30550 -9.02953 -8.99922 -8.08223 -6.17968 0.02239 0.60312 1.40213
1.40371 1.47804 1.80140 1.89548 2.41503 2.95718 2.98989 3.16220
3.21391 3.59949 3.74243 3.89678 4.04468 4.10946 4.19728 4.24872
4.28892 4.36233 4.46138 4.47393 4.50585 4.55124 4.68162 4.71950
4.79107 4.87839 4.90019 4.97614 5.02271 5.07453 5.13557 5.15231
5.16247 5.25519 5.28883 5.30699 5.47588 5.51860 5.55878 5.60527
5.62931 5.65950 5.68364 5.84332 6.01662 6.33270 6.35294 6.46740
6.52789 6.89341 7.03836 7.47016 8.98993
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.011956 B = 0.004520 C = 0.003901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2341.434313 B = 6193.379526 C = 7176.834071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.025 3.975
3 Si 0.944 3.056
4 H -0.271 1.271
5 H -0.290 1.290
6 H -0.267 1.267
7 C -0.496 4.496
8 H 0.058 0.942
9 C 0.038 3.962
10 C 0.128 3.872
11 N -0.508 5.508
12 C 0.064 3.936
13 C -0.114 4.114
14 C -0.111 4.111
15 C -0.094 4.094
16 C 0.158 3.842
17 H 0.050 0.950
18 C 0.288 3.712
19 N -0.497 5.497
20 C 0.005 3.995
21 C -0.090 4.090
22 C -0.124 4.124
23 C -0.100 4.100
24 C -0.115 4.115
25 C 0.032 3.968
26 N -0.590 5.590
27 H 0.433 0.567
28 C -0.186 4.186
29 C -0.162 4.162
30 H 0.257 0.743
31 H 0.045 0.955
32 H -0.003 1.003
33 H 0.010 0.990
34 H 0.079 0.921
35 H 0.079 0.921
36 H 0.066 0.934
37 H 0.064 0.936
38 H 0.091 0.909
39 H 0.085 0.915
40 H 0.066 0.934
41 H 0.121 0.879
42 H 0.157 0.843
43 H 0.167 0.833
44 H 0.150 0.850
45 H 0.054 0.946
46 H 0.059 0.941
47 H 0.076 0.924
48 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.505 -10.132 14.853 18.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.175 4.175
3 Si 0.770 3.230
4 H -0.197 1.197
5 H -0.216 1.216
6 H -0.192 1.192
7 C -0.533 4.533
8 H 0.076 0.924
9 C 0.037 3.963
10 C 0.001 3.999
11 N -0.233 5.233
12 C -0.063 4.063
13 C -0.151 4.151
14 C -0.148 4.148
15 C -0.133 4.133
16 C 0.048 3.952
17 H 0.068 0.932
18 C 0.019 3.981
19 N -0.217 5.217
20 C -0.113 4.113
21 C -0.110 4.110
22 C -0.144 4.144
23 C -0.119 4.119
24 C -0.136 4.136
25 C -0.078 4.078
26 N -0.203 5.203
27 H 0.274 0.726
28 C -0.224 4.224
29 C -0.199 4.199
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.015 0.985
33 H 0.028 0.972
34 H 0.097 0.903
35 H 0.097 0.903
36 H 0.085 0.915
37 H 0.083 0.917
38 H 0.110 0.890
39 H 0.104 0.896
40 H 0.085 0.915
41 H 0.139 0.861
42 H 0.174 0.826
43 H 0.184 0.816
44 H 0.167 0.833
45 H 0.073 0.927
46 H 0.078 0.922
47 H 0.094 0.906
48 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.102 -10.751 14.005 17.926
hybrid contribution -0.514 2.585 0.518 2.685
sum -3.616 -8.166 14.523 17.049
Atomic orbital electron populations
1.70136 1.07327 1.27087 1.50412 1.25659 0.95344 1.01824 0.94691
0.85830 0.78524 0.79592 0.79068 1.19667 1.21573 1.19205 1.20727
0.92951 0.90008 1.49657 0.92436 1.18836 0.97505 0.91190 0.88737
1.21262 0.93597 0.92783 0.92305 1.61888 1.03586 1.52078 1.05699
1.22121 0.89050 0.93676 1.01474 1.21645 0.97774 1.00539 0.95171
1.21562 0.95396 1.01077 0.96794 1.21570 0.95060 0.98806 0.97864
1.20210 0.86391 0.96326 0.92323 0.93198 1.23528 0.91920 0.96213
0.86396 1.70509 1.12102 1.14709 1.24357 1.19733 0.92770 1.02468
0.96359 1.20284 0.93635 0.97374 0.99676 1.21008 0.94813 1.01284
0.97343 1.21335 1.00468 0.95653 0.94490 1.20359 0.89454 1.01547
1.02215 1.19234 0.92155 0.98668 0.97786 1.42916 1.11247 1.41486
1.24672 0.72569 1.22611 0.94689 1.05102 1.00034 1.22645 0.95463
0.97369 1.04434 0.93419 0.93622 0.98476 0.97218 0.90301 0.90280
0.91491 0.91702 0.89032 0.89605 0.91537 0.86052 0.82571 0.81593
0.83270 0.92724 0.92249 0.90591 0.89979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -53.67 12.68 21.45 0.27 -53.40 16
2 C 0.02 1.35 5.19 84.65 0.44 1.79 16
3 Si 0.94 43.36 29.55 68.60 2.03 45.39 16
4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16
6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
7 C -0.50 -26.90 7.09 25.60 0.18 -26.72 16
8 H 0.06 3.07 7.50 -2.91 -0.02 3.05 16
9 C 0.04 1.95 0.57 -52.93 -0.03 1.92 16
10 C 0.13 6.33 4.48 86.30 0.39 6.71 16
11 N -0.51 -20.37 4.23 -875.51 -3.70 -24.07 16
12 C 0.06 2.43 4.68 86.33 0.40 2.84 16
13 C -0.11 -3.14 6.09 30.65 0.19 -2.95 16
14 C -0.11 -2.46 6.00 30.68 0.18 -2.28 16
15 C -0.09 -2.37 5.36 30.65 0.16 -2.21 16
16 C 0.16 5.27 2.38 44.19 0.11 5.37 16
17 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16
18 C 0.29 10.07 6.11 137.92 0.84 10.92 16
19 N -0.50 -20.11 9.28 -179.96 -1.67 -21.78 16
20 C 0.00 0.18 7.23 39.45 0.29 0.46 16
21 C -0.09 -2.74 10.05 22.25 0.22 -2.51 16
22 C -0.12 -2.74 9.96 22.02 0.22 -2.52 16
23 C -0.10 -1.90 10.03 22.31 0.22 -1.67 16
24 C -0.11 -2.53 10.07 22.32 0.22 -2.30 16
25 C 0.03 0.94 7.31 38.86 0.28 1.23 16
26 N -0.59 -16.69 6.23 -179.23 -1.12 -17.81 16
27 H 0.43 8.81 8.96 -92.71 -0.83 7.98 16
28 C -0.19 -9.60 9.88 30.60 0.30 -9.29 16
29 C -0.16 -7.55 9.26 30.60 0.28 -7.26 16
30 H 0.26 14.57 8.32 -92.71 -0.77 13.80 16
31 H 0.05 2.42 5.64 -2.39 -0.01 2.40 16
32 H 0.00 -0.17 7.31 -2.39 -0.02 -0.19 16
33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
34 H 0.08 3.40 5.09 -2.39 -0.01 3.39 16
35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
41 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16
42 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16
43 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16
44 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16
45 H 0.05 2.83 8.03 -2.39 -0.02 2.81 16
46 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16
47 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16
48 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16
Total: -1.00 -70.44 377.67 0.85 -69.59
By element:
Atomic # 1 Polarization: 30.43 SS G_CDS: 0.13 Total: 30.56 kcal
Atomic # 6 Polarization: -33.38 SS G_CDS: 4.91 Total: -28.47 kcal
Atomic # 7 Polarization: -110.85 SS G_CDS: -6.22 Total: -117.06 kcal
Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal
Total: -70.44 0.85 -69.59 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602840237.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.643 kcal
(2) G-P(sol) polarization free energy of solvation -70.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds