Wall clock time and date at job start Tue Mar 31 2020 14:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47113 * 2 1 4 4 C 1.46506 * 120.00031 * 274.70167 * 3 2 1 5 5 C 1.50701 * 109.47075 * 276.28856 * 4 3 2 6 6 H 1.08002 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47370 * 120.00271 * 9 7 5 12 12 H 1.48494 * 109.47378 * 240.00602 * 9 7 5 13 13 C 1.34773 * 120.00320 * 94.70063 * 3 2 1 14 14 O 1.21283 * 119.99888 * 4.35177 * 13 3 2 15 15 C 1.50702 * 120.00258 * 184.34874 * 13 3 2 16 16 C 1.53002 * 109.46861 * 298.11710 * 15 13 3 17 17 C 1.53006 * 109.47098 * 178.11825 * 15 13 3 18 18 C 1.50700 * 109.47133 * 58.11435 * 15 13 3 19 19 C 1.39372 * 119.50463 * 6.74681 * 18 15 13 20 20 C 1.36096 * 120.98683 * 179.97438 * 19 18 15 21 21 C 1.40533 * 119.65109 * 0.04129 * 20 19 18 22 22 C 1.40544 * 121.27773 * 179.97438 * 21 20 19 23 23 C 1.36091 * 119.65144 * 179.97438 * 22 21 20 24 24 C 1.39378 * 120.98893 * 359.96592 * 23 22 21 25 25 C 1.36091 * 120.99094 * 0.05834 * 24 23 22 26 26 C 1.40538 * 119.65305 * 359.95800 * 25 24 23 27 27 C 1.36091 * 119.50283 * 186.76033 * 18 15 13 28 28 H 1.08999 * 109.46988 * 304.87210 * 1 2 3 29 29 H 1.08996 * 109.47476 * 64.87165 * 1 2 3 30 30 H 1.09003 * 109.47238 * 184.87965 * 1 2 3 31 31 H 1.09000 * 109.47371 * 240.00220 * 2 1 3 32 32 H 1.08994 * 109.47254 * 119.99770 * 2 1 3 33 33 H 1.09003 * 109.46949 * 36.29006 * 4 3 2 34 34 H 1.08998 * 109.47214 * 156.29214 * 4 3 2 35 35 H 0.96998 * 120.00254 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46591 * 191.81528 * 16 15 13 37 37 H 1.09000 * 109.47229 * 311.80983 * 16 15 13 38 38 H 1.08995 * 109.47632 * 71.81726 * 16 15 13 39 39 H 1.08997 * 109.46651 * 304.63097 * 17 15 13 40 40 H 1.09001 * 109.47089 * 64.63072 * 17 15 13 41 41 H 1.09000 * 109.46992 * 184.63249 * 17 15 13 42 42 H 1.07998 * 119.50839 * 0.02562 * 19 18 15 43 43 H 1.08001 * 120.16707 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.17452 * 359.96439 * 22 21 20 45 45 H 1.08007 * 119.50660 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.50308 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.17121 * 180.23805 * 25 24 23 48 48 H 1.08001 * 120.17382 * 359.96032 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1644 2.1065 -1.2645 5 6 3.4906 1.7611 -1.8914 6 1 4.1577 1.0700 -1.3975 7 6 3.8518 2.3264 -3.0959 8 7 3.0393 3.1675 -3.6976 9 14 5.4954 1.8977 -3.8733 10 1 6.2183 0.9352 -3.0037 11 1 5.2675 1.2848 -5.2067 12 1 6.3068 3.1317 -4.0279 13 6 2.3331 1.9847 1.1632 14 8 2.2878 1.3603 2.2020 15 6 2.7415 3.4353 1.1732 16 6 4.0189 3.6111 0.3496 17 6 2.9977 3.8831 2.6136 18 6 1.6395 4.2716 0.5756 19 6 0.4215 3.6745 0.2551 20 6 -0.5943 4.4012 -0.2853 21 6 -0.4156 5.7742 -0.5259 22 6 -1.4413 6.5569 -1.0832 23 6 -1.2325 7.8839 -1.3017 24 6 -0.0148 8.4812 -0.9804 25 6 1.0011 7.7546 -0.4399 26 6 0.8228 6.3814 -0.2000 27 6 1.8485 5.5984 0.3566 28 1 -0.3633 0.5876 0.8431 29 1 -0.3634 0.4364 -0.9303 30 1 -0.3634 -1.0240 0.0874 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3580 1.8234 -1.9410 34 1 2.1204 3.1790 -1.0754 35 1 3.2936 3.5655 -4.5448 36 1 4.4303 4.6052 0.5249 37 1 4.7491 2.8582 0.6464 38 1 3.7875 3.4953 -0.7092 39 1 2.1143 3.6814 3.2193 40 1 3.8487 3.3353 3.0185 41 1 3.2128 4.9516 2.6291 42 1 0.2815 2.6196 0.4392 43 1 -1.5325 3.9249 -0.5289 44 1 -2.3901 6.1078 -1.3367 45 1 -2.0222 8.4831 -1.7304 46 1 0.1248 9.5363 -1.1637 47 1 1.9378 8.2317 -0.1925 48 1 2.7974 6.0475 0.6103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611211708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:07 Heat of formation + Delta-G solvation = 10.503748 kcal Electronic energy + Delta-G solvation = -29175.930616 eV Core-core repulsion = 25581.696283 eV Total energy + Delta-G solvation = -3594.234332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78984 -39.33540 -36.63764 -35.37198 -34.17479 -32.75848 -32.17569 -30.35291 -29.63319 -28.41830 -27.28967 -26.40165 -24.48148 -23.08012 -22.76607 -22.55272 -21.61560 -20.47156 -18.24152 -17.12195 -16.85356 -16.50031 -16.04123 -15.66541 -15.22004 -14.51967 -14.42152 -14.26447 -13.91261 -13.58358 -13.35357 -13.17491 -13.05260 -12.92980 -12.74682 -12.58376 -12.18126 -12.02399 -11.93455 -11.66713 -11.54857 -11.51259 -11.31613 -11.11204 -10.99267 -10.83087 -10.79407 -10.58489 -10.44974 -10.30021 -10.11213 -9.88574 -9.65081 -9.60028 -8.92105 -8.57363 -8.03610 -7.68937 -7.53353 -6.17850 -4.23304 0.86990 1.34133 2.40457 3.20007 3.28808 3.29687 3.31258 3.37645 3.91296 4.32201 4.44438 4.84142 4.99661 5.07195 5.12606 5.13861 5.23358 5.38919 5.45658 5.55235 5.61787 5.64038 5.71257 5.72891 5.78319 5.83179 5.86731 6.03142 6.09148 6.23472 6.26082 6.29294 6.32180 6.40886 6.45380 6.51142 6.52000 6.57025 6.62278 6.64528 6.71749 6.81971 6.93130 6.99398 7.13504 7.19685 7.34404 7.42095 7.56583 7.75323 8.06047 8.34741 8.78397 8.99646 9.40754 10.87378 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.005666 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.296183 B = 4940.458972 C = 5999.473267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.592 5.592 4 C 0.222 3.778 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.527 3.473 14 O -0.571 6.571 15 C -0.039 4.039 16 C -0.161 4.161 17 C -0.120 4.120 18 C -0.043 4.043 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.050 4.050 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.103 4.103 26 C -0.043 4.043 27 C -0.102 4.102 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 6.659 5.488 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.322 5.322 4 C 0.102 3.898 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.315 3.685 14 O -0.452 6.452 15 C -0.042 4.042 16 C -0.217 4.217 17 C -0.178 4.178 18 C -0.043 4.043 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.121 4.121 26 C -0.043 4.043 27 C -0.120 4.120 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.352 6.430 5.824 10.752 hybrid contribution 0.952 -0.264 -0.882 1.325 sum -5.400 6.166 4.942 9.571 Atomic orbital electron populations 1.22147 0.96992 1.01344 1.01809 1.21253 0.93256 0.84130 1.02673 1.48287 1.62405 1.13379 1.08173 1.19945 0.96950 0.93802 0.79053 1.21474 1.02897 1.27311 1.05474 0.92046 1.24912 0.97218 0.94945 0.96679 1.69945 1.35990 1.29097 1.17054 0.86559 0.83897 0.78465 0.79339 1.19648 1.20908 1.20798 1.20241 0.76233 0.88714 0.83355 1.90579 1.55417 1.66643 1.32593 1.19734 0.95831 0.91387 0.97206 1.22495 0.93810 1.00314 1.05110 1.21672 1.02325 1.00166 0.93597 1.19191 0.94026 0.93684 0.97393 1.21151 0.92508 1.00610 0.97561 1.20863 0.99177 0.92702 1.00054 1.18044 0.93680 0.93862 0.99385 1.20977 0.98232 0.94031 0.98901 1.20728 0.97425 0.95152 1.01178 1.20731 0.93724 0.99691 1.00221 1.20976 0.98950 0.92936 0.99201 1.17986 0.93555 0.93662 0.99123 1.20675 0.98174 0.93224 0.99942 0.93017 0.92401 0.92302 0.90452 0.90877 0.95234 0.91717 0.92582 0.93327 0.92725 0.85655 0.92340 0.91967 0.92415 0.85281 0.85980 0.86039 0.86572 0.86541 0.85946 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.62 37.16 0.36 -2.21 16 2 C 0.11 2.03 6.23 -4.04 -0.03 2.00 16 3 N -0.59 -12.23 1.42 -175.06 -0.25 -12.48 16 4 C 0.22 5.09 3.31 -5.19 -0.02 5.07 16 5 C -0.53 -13.32 6.90 -34.44 -0.24 -13.56 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.07 1.69 5.35 -17.82 -0.10 1.60 16 8 N -0.88 -23.72 13.29 55.43 0.74 -22.99 16 9 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.53 10.94 5.15 -10.99 -0.06 10.89 16 14 O -0.57 -12.85 15.44 5.55 0.09 -12.77 16 15 C -0.04 -0.72 0.58 -156.81 -0.09 -0.81 16 16 C -0.16 -3.09 7.18 37.16 0.27 -2.82 16 17 C -0.12 -1.95 7.69 37.16 0.29 -1.67 16 18 C -0.04 -0.77 3.02 -104.97 -0.32 -1.09 16 19 C -0.10 -1.82 6.96 -39.93 -0.28 -2.10 16 20 C -0.11 -1.83 9.77 -39.49 -0.39 -2.21 16 21 C -0.05 -0.81 5.74 -106.83 -0.61 -1.43 16 22 C -0.10 -1.44 9.77 -39.48 -0.39 -1.83 16 23 C -0.13 -1.59 9.95 -39.93 -0.40 -1.99 16 24 C -0.13 -1.59 9.95 -39.93 -0.40 -1.98 16 25 C -0.10 -1.45 9.77 -39.49 -0.39 -1.83 16 26 C -0.04 -0.71 5.74 -106.83 -0.61 -1.33 16 27 C -0.10 -1.73 8.42 -39.49 -0.33 -2.06 16 28 H 0.05 0.82 7.51 -51.93 -0.39 0.43 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 32 H 0.07 1.36 7.23 -51.93 -0.38 0.98 16 33 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.07 1.52 3.08 -51.93 -0.16 1.36 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.05 0.80 7.41 -51.93 -0.39 0.42 16 37 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 38 H 0.13 2.82 3.67 -51.93 -0.19 2.63 16 39 H 0.06 0.97 7.99 -51.93 -0.42 0.55 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.80 7.61 -51.93 -0.40 0.40 16 42 H 0.13 2.42 4.23 -52.49 -0.22 2.19 16 43 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 48 H 0.13 1.87 7.17 -52.49 -0.38 1.50 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -28.67 373.17 -9.64 -38.31 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.10 Total: 8.49 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.72 Total: -19.35 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.49 Total: -35.47 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.67 -9.64 -38.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611211708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.815 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds