Wall clock time and date at job start Tue Mar 31 2020 14:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47113 * 2 1 4 4 C 1.46506 * 120.00031 * 274.70167 * 3 2 1 5 5 C 1.50701 * 109.47075 * 276.28856 * 4 3 2 6 6 H 1.08002 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47370 * 120.00271 * 9 7 5 12 12 H 1.48494 * 109.47378 * 240.00602 * 9 7 5 13 13 C 1.34773 * 120.00320 * 94.70063 * 3 2 1 14 14 O 1.21283 * 119.99888 * 4.35177 * 13 3 2 15 15 C 1.50702 * 120.00258 * 184.34874 * 13 3 2 16 16 C 1.53002 * 109.46861 * 298.11710 * 15 13 3 17 17 C 1.53006 * 109.47098 * 178.11825 * 15 13 3 18 18 C 1.50700 * 109.47133 * 58.11435 * 15 13 3 19 19 C 1.39372 * 119.50463 * 6.74681 * 18 15 13 20 20 C 1.36096 * 120.98683 * 179.97438 * 19 18 15 21 21 C 1.40533 * 119.65109 * 0.04129 * 20 19 18 22 22 C 1.40544 * 121.27773 * 179.97438 * 21 20 19 23 23 C 1.36091 * 119.65144 * 179.97438 * 22 21 20 24 24 C 1.39378 * 120.98893 * 359.96592 * 23 22 21 25 25 C 1.36091 * 120.99094 * 0.05834 * 24 23 22 26 26 C 1.40538 * 119.65305 * 359.95800 * 25 24 23 27 27 C 1.36091 * 119.50283 * 186.76033 * 18 15 13 28 28 H 1.08999 * 109.46988 * 304.87210 * 1 2 3 29 29 H 1.08996 * 109.47476 * 64.87165 * 1 2 3 30 30 H 1.09003 * 109.47238 * 184.87965 * 1 2 3 31 31 H 1.09000 * 109.47371 * 240.00220 * 2 1 3 32 32 H 1.08994 * 109.47254 * 119.99770 * 2 1 3 33 33 H 1.09003 * 109.46949 * 36.29006 * 4 3 2 34 34 H 1.08998 * 109.47214 * 156.29214 * 4 3 2 35 35 H 0.96998 * 120.00254 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46591 * 191.81528 * 16 15 13 37 37 H 1.09000 * 109.47229 * 311.80983 * 16 15 13 38 38 H 1.08995 * 109.47632 * 71.81726 * 16 15 13 39 39 H 1.08997 * 109.46651 * 304.63097 * 17 15 13 40 40 H 1.09001 * 109.47089 * 64.63072 * 17 15 13 41 41 H 1.09000 * 109.46992 * 184.63249 * 17 15 13 42 42 H 1.07998 * 119.50839 * 0.02562 * 19 18 15 43 43 H 1.08001 * 120.16707 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.17452 * 359.96439 * 22 21 20 45 45 H 1.08007 * 119.50660 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.50308 * 180.02562 * 24 23 22 47 47 H 1.07995 * 120.17121 * 180.23805 * 25 24 23 48 48 H 1.08001 * 120.17382 * 359.96032 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1644 2.1065 -1.2645 5 6 3.4906 1.7611 -1.8914 6 1 4.1577 1.0700 -1.3975 7 6 3.8518 2.3264 -3.0959 8 7 3.0393 3.1675 -3.6976 9 14 5.4954 1.8977 -3.8733 10 1 6.2183 0.9352 -3.0037 11 1 5.2675 1.2848 -5.2067 12 1 6.3068 3.1317 -4.0279 13 6 2.3331 1.9847 1.1632 14 8 2.2878 1.3603 2.2020 15 6 2.7415 3.4353 1.1732 16 6 4.0189 3.6111 0.3496 17 6 2.9977 3.8831 2.6136 18 6 1.6395 4.2716 0.5756 19 6 0.4215 3.6745 0.2551 20 6 -0.5943 4.4012 -0.2853 21 6 -0.4156 5.7742 -0.5259 22 6 -1.4413 6.5569 -1.0832 23 6 -1.2325 7.8839 -1.3017 24 6 -0.0148 8.4812 -0.9804 25 6 1.0011 7.7546 -0.4399 26 6 0.8228 6.3814 -0.2000 27 6 1.8485 5.5984 0.3566 28 1 -0.3633 0.5876 0.8431 29 1 -0.3634 0.4364 -0.9303 30 1 -0.3634 -1.0240 0.0874 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3580 1.8234 -1.9410 34 1 2.1204 3.1790 -1.0754 35 1 3.2936 3.5655 -4.5448 36 1 4.4303 4.6052 0.5249 37 1 4.7491 2.8582 0.6464 38 1 3.7875 3.4953 -0.7092 39 1 2.1143 3.6814 3.2193 40 1 3.8487 3.3353 3.0185 41 1 3.2128 4.9516 2.6291 42 1 0.2815 2.6196 0.4392 43 1 -1.5325 3.9249 -0.5289 44 1 -2.3901 6.1078 -1.3367 45 1 -2.0222 8.4831 -1.7304 46 1 0.1248 9.5363 -1.1637 47 1 1.9378 8.2317 -0.1925 48 1 2.7974 6.0475 0.6103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611211708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:06 Heat of formation + Delta-G solvation = -1.004817 kcal Electronic energy + Delta-G solvation = -29176.429664 eV Core-core repulsion = 25581.696283 eV Total energy + Delta-G solvation = -3594.733381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.20412 -40.65299 -37.96580 -37.04436 -35.53364 -34.62214 -33.34800 -31.85813 -30.83055 -29.59833 -29.10965 -27.88018 -25.85062 -24.95404 -24.05284 -23.76045 -22.79570 -21.90042 -19.76437 -18.62235 -18.33459 -18.03436 -17.44893 -17.17396 -16.70633 -16.19748 -15.73015 -15.56968 -15.31398 -14.93888 -14.80816 -14.54507 -14.42332 -14.14398 -14.10209 -13.96332 -13.84285 -13.41904 -13.30412 -13.21350 -12.96411 -12.94958 -12.83087 -12.63208 -12.59509 -12.27065 -12.14934 -12.12318 -11.81716 -11.73939 -11.68190 -11.49273 -11.31687 -10.76933 -10.64476 -10.44741 -9.42373 -9.26641 -8.69676 -8.15089 -6.25979 -0.27831 0.16076 1.23104 1.38633 1.43048 1.52005 1.71894 2.13865 2.30376 2.45864 3.14184 3.26711 3.54428 3.62908 3.84328 4.04166 4.09410 4.13334 4.20827 4.25849 4.33917 4.37888 4.40001 4.50962 4.52304 4.56889 4.65396 4.78816 4.82846 4.88919 4.91039 4.97149 4.98758 5.03642 5.09182 5.12298 5.20494 5.22763 5.27296 5.36369 5.40843 5.42659 5.62154 5.68764 5.71888 5.75260 5.76565 5.88939 6.00407 6.12144 6.20224 6.59968 6.85243 7.29375 7.43439 8.89243 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.005666 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.296183 B = 4940.458972 C = 5999.473267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.242 3.758 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.028 3.972 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.522 3.478 14 O -0.593 6.593 15 C -0.036 4.036 16 C -0.153 4.153 17 C -0.114 4.114 18 C -0.062 4.062 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.071 4.071 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.065 4.065 27 C -0.104 4.104 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.005 0.995 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.143 0.857 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 8.750 5.180 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 N -0.323 5.323 4 C 0.122 3.878 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.173 4.173 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.203 1.203 13 C 0.311 3.689 14 O -0.476 6.476 15 C -0.039 4.039 16 C -0.210 4.210 17 C -0.171 4.171 18 C -0.063 4.063 19 C -0.143 4.143 20 C -0.131 4.131 21 C -0.071 4.071 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.065 4.065 27 C -0.122 4.122 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.168 0.832 47 H 0.160 0.840 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.702 8.509 5.519 12.156 hybrid contribution 0.971 -0.830 -0.807 1.511 sum -5.731 7.679 4.712 10.677 Atomic orbital electron populations 1.22033 0.94674 1.03062 1.01270 1.21418 0.95232 0.83095 1.02236 1.48281 1.62418 1.14037 1.07575 1.19579 0.95011 0.93993 0.79255 1.21566 1.03364 1.26696 1.05576 0.93321 1.25484 0.99816 0.94870 0.97084 1.70033 1.37429 1.30091 1.17421 0.85710 0.80644 0.78223 0.78364 1.19729 1.20726 1.20267 1.20698 0.75637 0.89727 0.82859 1.90550 1.56528 1.67453 1.33081 1.19734 0.95670 0.89987 0.98525 1.22347 0.94048 1.01551 1.03088 1.21644 1.01857 1.01760 0.91859 1.19168 0.93901 0.94300 0.98910 1.21115 0.93515 1.00196 0.99499 1.21113 0.99423 0.93269 0.99277 1.18350 0.94696 0.93961 1.00082 1.21271 0.98518 0.94761 0.98975 1.21194 0.98275 0.94842 0.99587 1.21197 0.93068 1.01263 0.98276 1.21272 1.00521 0.92029 0.99617 1.18303 0.93579 0.95007 0.99593 1.20891 0.99032 0.92786 0.99461 0.93571 0.92871 0.89359 0.90878 0.91174 0.97723 0.91695 0.92556 0.90667 0.93700 0.88755 0.93063 0.92169 0.89756 0.86694 0.84394 0.84108 0.83268 0.83236 0.83969 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 9.62 71.98 0.69 -4.10 16 2 C 0.10 3.90 6.23 86.38 0.54 4.44 16 3 N -0.59 -25.43 1.42 -826.16 -1.18 -26.60 16 4 C 0.24 11.50 3.31 85.63 0.28 11.79 16 5 C -0.53 -27.32 6.90 25.60 0.18 -27.14 16 6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.03 1.47 5.35 84.65 0.45 1.92 16 8 N -0.91 -49.51 13.29 21.45 0.28 -49.23 16 9 Si 0.94 41.61 29.54 68.60 2.03 43.63 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.52 22.33 5.15 87.66 0.45 22.79 16 14 O -0.59 -27.39 15.44 -3.04 -0.05 -27.44 16 15 C -0.04 -1.36 0.58 -53.67 -0.03 -1.40 16 16 C -0.15 -5.94 7.18 71.98 0.52 -5.42 16 17 C -0.11 -3.66 7.69 71.98 0.55 -3.10 16 18 C -0.06 -2.30 3.02 -20.09 -0.06 -2.36 16 19 C -0.13 -4.69 6.96 22.04 0.15 -4.54 16 20 C -0.11 -3.80 9.77 22.33 0.22 -3.59 16 21 C -0.07 -2.28 5.74 -21.30 -0.12 -2.40 16 22 C -0.12 -3.03 9.77 22.33 0.22 -2.81 16 23 C -0.12 -2.62 9.95 22.04 0.22 -2.41 16 24 C -0.12 -2.60 9.95 22.04 0.22 -2.38 16 25 C -0.12 -3.00 9.77 22.33 0.22 -2.78 16 26 C -0.06 -2.07 5.74 -21.30 -0.12 -2.20 16 27 C -0.10 -3.46 8.42 22.33 0.19 -3.27 16 28 H 0.05 1.50 7.51 -2.39 -0.02 1.48 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 32 H 0.07 2.68 7.23 -2.39 -0.02 2.66 16 33 H 0.00 0.25 8.12 -2.39 -0.02 0.23 16 34 H 0.07 3.17 3.08 -2.39 -0.01 3.16 16 35 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.07 2.43 7.41 -2.39 -0.02 2.41 16 37 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.09 4.32 3.67 -2.39 -0.01 4.31 16 39 H 0.05 1.70 7.99 -2.39 -0.02 1.68 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 2.21 7.61 -2.39 -0.02 2.19 16 42 H 0.12 4.52 4.23 -2.91 -0.01 4.51 16 43 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 45 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 47 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 48 H 0.14 4.02 7.17 -2.91 -0.02 4.00 16 Total: -1.00 -62.73 373.17 6.81 -55.93 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.95 Total: 32.67 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.76 Total: -28.96 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -0.89 Total: -75.83 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -62.73 6.81 -55.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611211708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.923 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds