Wall clock time and date at job start Tue Mar 31 2020 16:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39325 * 119.12820 * 2 1 4 4 C 1.36580 * 119.93498 * 179.97438 * 3 2 1 5 5 C 1.40759 * 118.15096 * 0.02562 * 4 3 2 6 6 C 1.40432 * 121.38070 * 179.97438 * 5 4 3 7 7 C 1.36139 * 119.61822 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.56788 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46927 * 269.99925 * 8 7 6 10 10 C 1.46905 * 110.99746 * 179.97438 * 9 8 7 11 11 C 1.53030 * 109.45927 * 275.02793 * 10 9 8 12 12 C 1.53198 * 109.31313 * 178.60283 * 11 10 9 13 13 N 1.46922 * 108.76395 * 54.65066 * 12 11 10 14 14 C 1.36941 * 120.62688 * 126.40551 * 13 12 11 15 15 H 1.07999 * 120.00119 * 331.82992 * 14 13 12 16 16 C 1.38815 * 119.99579 * 151.82616 * 14 13 12 17 17 N 1.31610 * 120.00448 * 343.07871 * 16 14 13 18 18 Si 1.86807 * 119.99576 * 163.07755 * 16 14 13 19 19 H 1.48495 * 109.47034 * 90.00013 * 18 16 14 20 20 H 1.48505 * 109.46774 * 209.99864 * 18 16 14 21 21 H 1.48500 * 109.47013 * 329.99688 * 18 16 14 22 22 C 1.46925 * 118.74229 * 306.39019 * 13 12 11 23 23 C 1.53042 * 109.45865 * 154.97333 * 10 9 8 24 24 C 1.39363 * 120.86491 * 0.04127 * 7 6 5 25 25 C 1.36074 * 121.06952 * 359.97438 * 24 7 6 26 26 C 1.40599 * 119.74596 * 0.02562 * 25 24 7 27 27 N 1.31080 * 119.12153 * 179.72814 * 2 1 3 28 28 H 1.09001 * 109.46947 * 89.99802 * 1 2 3 29 29 H 1.08998 * 109.47563 * 209.99561 * 1 2 3 30 30 H 1.09001 * 109.47190 * 330.00247 * 1 2 3 31 31 H 1.08000 * 120.02982 * 359.95706 * 3 2 1 32 32 H 1.07999 * 120.91950 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.19307 * 0.02562 * 6 5 4 34 34 H 1.08997 * 109.47094 * 30.00200 * 8 7 6 35 35 H 1.09005 * 109.46917 * 149.99985 * 8 7 6 36 36 H 1.00898 * 111.00093 * 56.04687 * 9 8 7 37 37 H 1.09004 * 109.45868 * 35.00184 * 10 9 8 38 38 H 1.08996 * 109.50206 * 298.56763 * 11 10 9 39 39 H 1.09001 * 109.49998 * 58.66481 * 11 10 9 40 40 H 1.09005 * 109.59722 * 294.87086 * 12 11 10 41 41 H 1.08992 * 109.70653 * 174.50608 * 12 11 10 42 42 H 0.97002 * 120.00672 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58505 * 293.81473 * 22 13 12 44 44 H 1.09000 * 109.70103 * 173.46334 * 22 13 12 45 45 H 1.09010 * 109.49585 * 301.33979 * 23 10 9 46 46 H 1.08994 * 109.49672 * 61.40004 * 23 10 9 47 47 H 1.07999 * 119.46631 * 179.97438 * 24 7 6 48 48 H 1.07997 * 120.12752 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2170 0.0000 4 6 3.5509 1.2363 0.0005 5 6 4.2324 0.0047 0.0005 6 6 5.6354 -0.0547 0.0005 7 6 6.2576 -1.2656 0.0010 8 6 7.7633 -1.3280 0.0016 9 7 8.2530 -1.3486 -1.3832 10 6 9.7203 -1.4088 -1.4219 11 6 10.2918 0.0064 -1.3094 12 6 11.8221 -0.0632 -1.3149 13 7 12.2576 -0.7963 -2.5114 14 6 13.1671 -0.2456 -3.3744 15 1 13.2365 0.8276 -3.4733 16 6 13.9998 -1.0669 -4.1221 17 7 14.1618 -2.3272 -3.7792 18 14 14.8905 -0.3832 -5.6151 19 1 16.2095 0.1578 -5.1997 20 1 15.0910 -1.4666 -6.6108 21 1 14.0788 0.7024 -6.2215 22 6 11.6991 -2.1315 -2.7641 23 6 10.1702 -2.0387 -2.7421 24 6 5.5204 -2.4482 0.0007 25 6 4.1598 -2.4276 0.0004 26 6 3.4808 -1.1964 -0.0002 27 7 2.1449 -1.1451 0.0054 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6315 2.1443 -0.0007 32 1 4.0927 2.1705 0.0001 33 1 6.2176 0.8550 0.0009 34 1 8.1630 -0.4537 0.5154 35 1 8.0893 -2.2322 0.5158 36 1 7.9104 -0.5525 -1.8998 37 1 10.0810 -2.0133 -0.5896 38 1 9.9516 0.6044 -2.1548 39 1 9.9519 0.4632 -0.3799 40 1 12.1677 -0.5837 -0.4216 41 1 12.2358 0.9450 -1.3333 42 1 14.7433 -2.9013 -4.3019 43 1 12.0346 -2.8207 -1.9891 44 1 12.0294 -2.4895 -3.7392 45 1 9.7436 -3.0378 -2.8325 46 1 9.8306 -1.4216 -3.5739 47 1 6.0372 -3.3965 0.0007 48 1 3.6036 -3.3533 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614992541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:38 Heat of formation + Delta-G solvation = 66.151104 kcal Electronic energy + Delta-G solvation = -26321.644875 eV Core-core repulsion = 22762.116344 eV Total energy + Delta-G solvation = -3559.528531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.08840 -38.53811 -37.56919 -35.09371 -33.74131 -32.85833 -31.69429 -30.52181 -29.97922 -29.36299 -27.99913 -25.30984 -24.07709 -23.97748 -22.31944 -22.16238 -21.68428 -21.30373 -19.28860 -18.21988 -17.18923 -16.68170 -16.55864 -15.17648 -15.11400 -14.87116 -14.75308 -14.57195 -14.41829 -14.09214 -13.72941 -13.47147 -13.30711 -13.29796 -13.22785 -12.95409 -12.73205 -12.54010 -12.31201 -12.16188 -11.61821 -11.55653 -11.33936 -11.30356 -11.02218 -10.79720 -10.77316 -10.69997 -10.24638 -10.22467 -9.98920 -9.72825 -9.71968 -9.47948 -8.82873 -8.48920 -8.41535 -8.06233 -6.65950 -5.77961 -3.20307 0.18366 0.59529 1.79911 2.65818 3.37635 3.44772 3.47168 3.85367 3.92283 4.28287 4.42791 4.46104 4.50287 4.55389 4.69960 4.81871 4.94572 5.10414 5.14242 5.20179 5.23546 5.30528 5.38022 5.42584 5.49014 5.54906 5.61252 5.67901 5.68403 5.73408 5.84318 5.87392 5.91717 6.07976 6.12657 6.30340 6.32661 6.40232 6.47889 6.58612 6.62493 6.67157 6.69971 6.85012 6.94044 7.29972 7.38771 7.59987 7.70112 7.70985 7.80544 8.46537 9.22652 9.86088 10.42921 11.30595 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002031 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.547152 B =13782.907552 C =14050.812663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.152 3.848 3 C -0.177 4.177 4 C -0.054 4.054 5 C -0.105 4.105 6 C -0.093 4.093 7 C -0.069 4.069 8 C 0.094 3.906 9 N -0.681 5.681 10 C 0.095 3.905 11 C -0.160 4.160 12 C 0.150 3.850 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.171 3.829 23 C -0.125 4.125 24 C -0.073 4.073 25 C -0.100 4.100 26 C 0.131 3.869 27 N -0.477 5.477 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.338 0.662 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.017 0.983 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.133 0.867 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.501 4.744 9.972 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.001 4.001 3 C -0.197 4.197 4 C -0.079 4.079 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.070 4.070 8 C -0.035 4.035 9 N -0.311 5.311 10 C -0.013 4.013 11 C -0.201 4.201 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.044 3.956 23 C -0.164 4.164 24 C -0.093 4.093 25 C -0.119 4.119 26 C 0.010 3.990 27 N -0.186 5.186 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.151 0.849 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.831 3.068 9.828 26.881 hybrid contribution 1.230 2.086 -0.520 2.476 sum -23.601 5.153 9.309 25.889 Atomic orbital electron populations 1.20770 0.88749 1.03547 1.03254 1.21465 0.97087 0.88276 0.93240 1.21676 0.95045 0.99178 1.03780 1.21483 0.94471 0.97354 0.94639 1.18791 0.94695 0.93993 1.03234 1.20870 0.92468 0.98063 0.99883 1.19689 0.96072 0.92850 0.98365 1.20961 0.89351 1.01583 0.91598 1.60811 1.10503 1.48568 1.11231 1.21564 0.84487 0.95735 0.99560 1.22695 1.00210 0.97323 0.99857 1.20806 0.90656 0.96188 0.90127 1.44065 1.47970 1.16695 1.22767 1.19155 1.11341 0.91374 1.16357 0.91858 1.25043 0.97453 0.96416 1.00739 1.70023 1.39637 1.05905 1.39095 0.86320 0.79600 0.78024 0.82959 1.21427 1.21529 1.20528 1.20801 0.86858 0.86203 1.01708 1.22179 0.99706 0.99281 0.95281 1.20858 0.93309 0.98528 0.96637 1.20771 0.93988 0.96365 1.00779 1.18853 0.88948 0.93046 0.98171 1.67859 1.08536 1.28770 1.13468 0.90193 0.90368 0.90601 0.84696 0.84410 0.85457 0.94266 0.90043 0.84464 0.91200 0.92248 0.93680 0.96632 0.92981 0.93630 0.96515 0.89373 0.92688 0.92870 0.84928 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.14 36.01 0.37 -0.28 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.18 -1.45 9.64 -39.78 -0.38 -1.84 16 4 C -0.05 -0.48 9.90 -39.23 -0.39 -0.87 16 5 C -0.11 -1.18 5.74 -106.80 -0.61 -1.79 16 6 C -0.09 -0.99 9.38 -39.51 -0.37 -1.36 16 7 C -0.07 -0.77 5.36 -104.96 -0.56 -1.33 16 8 C 0.09 1.09 5.58 -4.98 -0.03 1.06 16 9 N -0.68 -9.41 6.24 -107.95 -0.67 -10.08 16 10 C 0.10 1.57 2.43 -67.67 -0.16 1.40 16 11 C -0.16 -2.69 5.33 -26.61 -0.14 -2.83 16 12 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 13 N -0.59 -14.81 2.99 -172.32 -0.52 -15.32 16 14 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 15 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 18 Si 0.90 21.73 29.59 -169.99 -5.03 16.71 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 23 C -0.12 -2.40 5.69 -26.61 -0.15 -2.55 16 24 C -0.07 -0.79 9.58 -39.94 -0.38 -1.18 16 25 C -0.10 -1.13 9.98 -39.47 -0.39 -1.53 16 26 C 0.13 1.62 6.60 -84.85 -0.56 1.06 16 27 N -0.48 -5.79 10.24 -7.22 -0.07 -5.87 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.04 0.44 7.34 -51.93 -0.38 0.06 16 35 H 0.08 0.93 7.99 -51.93 -0.42 0.52 16 36 H 0.34 4.58 8.47 -39.29 -0.33 4.24 16 37 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.04 0.65 7.42 -51.93 -0.39 0.27 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 45 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -31.15 384.59 -12.17 -43.32 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.69 Total: 2.20 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -4.61 Total: -11.13 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.64 Total: -56.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.15 -12.17 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614992541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.475 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds