Wall clock time and date at job start Tue Mar 31 2020 16:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39325 * 119.12820 * 2 1 4 4 C 1.36580 * 119.93498 * 179.97438 * 3 2 1 5 5 C 1.40759 * 118.15096 * 0.02562 * 4 3 2 6 6 C 1.40432 * 121.38070 * 179.97438 * 5 4 3 7 7 C 1.36139 * 119.61822 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.56788 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46927 * 269.99925 * 8 7 6 10 10 C 1.46905 * 110.99746 * 179.97438 * 9 8 7 11 11 C 1.53030 * 109.45927 * 275.02793 * 10 9 8 12 12 C 1.53198 * 109.31313 * 178.60283 * 11 10 9 13 13 N 1.46922 * 108.76395 * 54.65066 * 12 11 10 14 14 C 1.36941 * 120.62688 * 126.40551 * 13 12 11 15 15 H 1.07999 * 120.00119 * 331.82992 * 14 13 12 16 16 C 1.38815 * 119.99579 * 151.82616 * 14 13 12 17 17 N 1.31610 * 120.00448 * 343.07871 * 16 14 13 18 18 Si 1.86807 * 119.99576 * 163.07755 * 16 14 13 19 19 H 1.48495 * 109.47034 * 90.00013 * 18 16 14 20 20 H 1.48505 * 109.46774 * 209.99864 * 18 16 14 21 21 H 1.48500 * 109.47013 * 329.99688 * 18 16 14 22 22 C 1.46925 * 118.74229 * 306.39019 * 13 12 11 23 23 C 1.53042 * 109.45865 * 154.97333 * 10 9 8 24 24 C 1.39363 * 120.86491 * 0.04127 * 7 6 5 25 25 C 1.36074 * 121.06952 * 359.97438 * 24 7 6 26 26 C 1.40599 * 119.74596 * 0.02562 * 25 24 7 27 27 N 1.31080 * 119.12153 * 179.72814 * 2 1 3 28 28 H 1.09001 * 109.46947 * 89.99802 * 1 2 3 29 29 H 1.08998 * 109.47563 * 209.99561 * 1 2 3 30 30 H 1.09001 * 109.47190 * 330.00247 * 1 2 3 31 31 H 1.08000 * 120.02982 * 359.95706 * 3 2 1 32 32 H 1.07999 * 120.91950 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.19307 * 0.02562 * 6 5 4 34 34 H 1.08997 * 109.47094 * 30.00200 * 8 7 6 35 35 H 1.09005 * 109.46917 * 149.99985 * 8 7 6 36 36 H 1.00898 * 111.00093 * 56.04687 * 9 8 7 37 37 H 1.09004 * 109.45868 * 35.00184 * 10 9 8 38 38 H 1.08996 * 109.50206 * 298.56763 * 11 10 9 39 39 H 1.09001 * 109.49998 * 58.66481 * 11 10 9 40 40 H 1.09005 * 109.59722 * 294.87086 * 12 11 10 41 41 H 1.08992 * 109.70653 * 174.50608 * 12 11 10 42 42 H 0.97002 * 120.00672 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58505 * 293.81473 * 22 13 12 44 44 H 1.09000 * 109.70103 * 173.46334 * 22 13 12 45 45 H 1.09010 * 109.49585 * 301.33979 * 23 10 9 46 46 H 1.08994 * 109.49672 * 61.40004 * 23 10 9 47 47 H 1.07999 * 119.46631 * 179.97438 * 24 7 6 48 48 H 1.07997 * 120.12752 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2170 0.0000 4 6 3.5509 1.2363 0.0005 5 6 4.2324 0.0047 0.0005 6 6 5.6354 -0.0547 0.0005 7 6 6.2576 -1.2656 0.0010 8 6 7.7633 -1.3280 0.0016 9 7 8.2530 -1.3486 -1.3832 10 6 9.7203 -1.4088 -1.4219 11 6 10.2918 0.0064 -1.3094 12 6 11.8221 -0.0632 -1.3149 13 7 12.2576 -0.7963 -2.5114 14 6 13.1671 -0.2456 -3.3744 15 1 13.2365 0.8276 -3.4733 16 6 13.9998 -1.0669 -4.1221 17 7 14.1618 -2.3272 -3.7792 18 14 14.8905 -0.3832 -5.6151 19 1 16.2095 0.1578 -5.1997 20 1 15.0910 -1.4666 -6.6108 21 1 14.0788 0.7024 -6.2215 22 6 11.6991 -2.1315 -2.7641 23 6 10.1702 -2.0387 -2.7421 24 6 5.5204 -2.4482 0.0007 25 6 4.1598 -2.4276 0.0004 26 6 3.4808 -1.1964 -0.0002 27 7 2.1449 -1.1451 0.0054 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6315 2.1443 -0.0007 32 1 4.0927 2.1705 0.0001 33 1 6.2176 0.8550 0.0009 34 1 8.1630 -0.4537 0.5154 35 1 8.0893 -2.2322 0.5158 36 1 7.9104 -0.5525 -1.8998 37 1 10.0810 -2.0133 -0.5896 38 1 9.9516 0.6044 -2.1548 39 1 9.9519 0.4632 -0.3799 40 1 12.1677 -0.5837 -0.4216 41 1 12.2358 0.9450 -1.3333 42 1 14.7433 -2.9013 -4.3019 43 1 12.0346 -2.8207 -1.9891 44 1 12.0294 -2.4895 -3.7392 45 1 9.7436 -3.0378 -2.8325 46 1 9.8306 -1.4216 -3.5739 47 1 6.0372 -3.3965 0.0007 48 1 3.6036 -3.3533 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614992541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:37 Heat of formation + Delta-G solvation = 48.464766 kcal Electronic energy + Delta-G solvation = -26322.411812 eV Core-core repulsion = 22762.116344 eV Total energy + Delta-G solvation = -3560.295468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.82025 -39.78794 -38.63877 -36.51171 -34.48185 -34.22854 -32.95115 -31.79948 -31.30407 -30.59722 -28.97665 -26.79268 -25.33411 -24.75414 -23.77295 -23.07180 -22.97693 -22.42297 -20.88946 -19.00580 -18.75754 -17.78651 -17.29508 -16.91096 -16.19325 -16.08317 -15.62023 -15.52044 -15.38369 -15.30670 -15.22434 -14.82630 -14.68533 -14.42077 -14.00163 -13.96283 -13.75169 -13.65842 -13.29890 -13.05245 -13.01535 -12.98064 -12.60590 -12.50194 -12.44356 -12.22248 -12.07800 -11.97426 -11.90689 -11.76368 -11.51839 -11.41311 -11.15397 -10.54287 -10.45011 -9.57849 -9.33822 -9.08968 -8.67537 -7.87356 -5.32573 -0.54264 -0.15449 1.04544 1.45745 1.47651 1.57174 1.90995 2.51171 3.05137 3.25601 3.27143 3.40096 3.63953 3.71720 3.77030 3.79871 3.93212 3.99053 4.09026 4.17034 4.24062 4.40618 4.42113 4.48425 4.52388 4.60891 4.69477 4.72338 4.76059 4.80511 4.88670 4.89610 4.99548 5.02966 5.07502 5.11443 5.12479 5.16913 5.23574 5.28039 5.35553 5.36657 5.53087 5.59135 5.65344 5.65553 5.75196 5.91795 6.12955 6.39887 6.49585 6.98803 7.15398 7.87154 8.38577 9.19062 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002031 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.547152 B =13782.907552 C =14050.812663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.176 4.176 4 C -0.057 4.057 5 C -0.125 4.125 6 C -0.087 4.087 7 C -0.082 4.082 8 C 0.100 3.900 9 N -0.681 5.681 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.143 3.857 13 N -0.611 5.611 14 C -0.263 4.263 15 H 0.065 0.935 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.271 1.271 22 C 0.178 3.822 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.116 4.116 26 C 0.107 3.893 27 N -0.512 5.512 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.342 0.658 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.013 0.987 41 H 0.052 0.948 42 H 0.250 0.750 43 H -0.004 1.004 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.140 0.860 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.370 7.160 10.518 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.195 4.195 4 C -0.083 4.083 5 C -0.127 4.127 6 C -0.107 4.107 7 C -0.082 4.082 8 C -0.028 4.028 9 N -0.311 5.311 10 C -0.001 4.001 11 C -0.185 4.185 12 C 0.017 3.983 13 N -0.334 5.334 14 C -0.393 4.393 15 H 0.083 0.917 16 C -0.248 4.248 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.196 1.196 22 C 0.051 3.949 23 C -0.151 4.151 24 C -0.097 4.097 25 C -0.134 4.134 26 C -0.014 4.014 27 N -0.223 5.223 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.184 0.816 33 H 0.165 0.835 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.160 0.840 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.158 0.842 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.731 5.506 10.396 29.205 hybrid contribution 1.694 1.384 -0.624 2.275 sum -25.037 6.889 9.772 27.745 Atomic orbital electron populations 1.20874 0.86572 1.04566 1.04116 1.22149 0.98732 0.88341 0.91735 1.22076 0.95106 0.99976 1.02377 1.21872 0.95062 0.97581 0.93758 1.19043 0.95130 0.94610 1.03922 1.21089 0.92455 0.98555 0.98577 1.19647 0.95655 0.93192 0.99709 1.20934 0.89628 1.02200 0.90065 1.60661 1.08336 1.49039 1.13017 1.21269 0.86279 0.95167 0.97426 1.22522 0.96792 0.97730 1.01447 1.20989 0.93500 0.95469 0.88320 1.44326 1.47962 1.17096 1.24050 1.19492 1.11386 0.91633 1.16807 0.91708 1.25810 0.98741 0.96788 1.03414 1.70178 1.40648 1.07096 1.40156 0.85301 0.78472 0.77309 0.79513 1.21057 1.21901 1.19586 1.20582 0.89849 0.85558 0.98879 1.21934 0.96092 1.00041 0.97008 1.20976 0.93229 0.99050 0.96440 1.20892 0.94351 0.96591 1.01587 1.19141 0.89512 0.93864 0.98856 1.67884 1.08706 1.30372 1.15297 0.89246 0.91016 0.87927 0.81234 0.81620 0.83531 0.93067 0.89934 0.83952 0.91386 0.92540 0.90347 0.96864 0.92972 0.94118 0.98621 0.93002 0.91906 0.93595 0.84186 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.14 71.24 0.72 -0.34 16 2 C 0.14 2.52 6.78 42.93 0.29 2.81 16 3 C -0.18 -2.38 9.64 22.14 0.21 -2.17 16 4 C -0.06 -0.87 9.90 22.50 0.22 -0.65 16 5 C -0.13 -2.60 5.74 -21.28 -0.12 -2.73 16 6 C -0.09 -1.66 9.38 22.32 0.21 -1.45 16 7 C -0.08 -1.67 5.36 -20.08 -0.11 -1.78 16 8 C 0.10 2.08 5.58 85.56 0.48 2.55 16 9 N -0.68 -17.24 6.24 -495.44 -3.09 -20.33 16 10 C 0.11 3.36 2.43 44.94 0.11 3.47 16 11 C -0.14 -4.51 5.33 30.67 0.16 -4.35 16 12 C 0.14 5.83 6.52 86.37 0.56 6.39 16 13 N -0.61 -30.82 2.99 -699.11 -2.09 -32.91 16 14 C -0.26 -14.60 9.58 84.03 0.81 -13.79 16 15 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 16 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 17 N -0.93 -55.98 11.19 21.65 0.24 -55.74 16 18 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.18 8.69 5.30 86.36 0.46 9.15 16 23 C -0.11 -4.25 5.69 30.67 0.17 -4.07 16 24 C -0.08 -1.63 9.58 22.04 0.21 -1.42 16 25 C -0.12 -2.64 9.98 22.34 0.22 -2.41 16 26 C 0.11 2.61 6.60 40.29 0.27 2.88 16 27 N -0.51 -12.30 10.24 -176.76 -1.81 -14.11 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.48 8.07 -2.39 -0.02 0.46 16 31 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.05 0.96 7.34 -2.39 -0.02 0.95 16 35 H 0.08 1.71 7.99 -2.38 -0.02 1.69 16 36 H 0.34 8.35 8.47 -89.70 -0.76 7.59 16 37 H 0.07 2.18 7.80 -2.38 -0.02 2.16 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.97 7.42 -2.39 -0.02 1.95 16 40 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 45 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 48 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -69.29 384.59 0.77 -68.53 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.19 Total: 17.73 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.30 Total: -10.45 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.75 Total: -123.09 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.29 0.77 -68.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614992541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.995 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds