Wall clock time and date at job start Tue Mar 31 2020 14:01:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46895 * 109.46988 * 2 1
4 4 C 1.46898 * 111.00174 * 300.89368 * 3 2 1
5 5 C 1.53005 * 109.47280 * 288.93634 * 4 3 2
6 6 C 1.50700 * 109.47204 * 185.07192 * 5 4 3
7 7 C 1.38239 * 119.99590 * 269.72291 * 6 5 4
8 8 C 1.38236 * 119.99753 * 179.76650 * 7 6 5
9 9 C 1.38244 * 119.99968 * 0.50947 * 8 7 6
10 10 C 1.38241 * 119.99750 * 359.74530 * 9 8 7
11 11 C 1.38233 * 120.00036 * 359.97438 * 10 9 8
12 12 C 1.46899 * 111.00425 * 64.84741 * 3 2 1
13 13 C 1.50705 * 109.46889 * 66.04606 * 12 3 2
14 14 C 1.38305 * 119.93163 * 90.00102 * 13 12 3
15 15 C 1.38096 * 120.06597 * 179.97438 * 14 13 12
16 16 C 1.38874 * 119.93682 * 0.02562 * 15 14 13
17 17 O 1.35747 * 120.07492 * 180.02562 * 16 15 14
18 18 C 1.34837 * 116.99629 * 5.57746 * 17 16 15
19 19 H 1.07996 * 120.00123 * 354.93169 * 18 17 16
20 20 C 1.38651 * 119.99824 * 174.93884 * 18 17 16
21 21 N 1.31562 * 120.00107 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 119.99940 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.47150 * 60.00071 * 22 20 18
24 24 H 1.48504 * 109.47158 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47082 * 300.00003 * 22 20 18
26 26 C 1.38887 * 119.85808 * 0.28178 * 16 15 14
27 27 C 1.38095 * 119.92933 * 359.44751 * 26 16 15
28 28 H 1.09002 * 109.47330 * 305.15803 * 1 2 3
29 29 H 1.08997 * 109.47066 * 65.15779 * 1 2 3
30 30 H 1.08998 * 109.47375 * 185.15802 * 1 2 3
31 31 H 1.09004 * 109.46802 * 240.00004 * 2 1 3
32 32 H 1.08998 * 109.46977 * 119.99874 * 2 1 3
33 33 H 1.09004 * 109.47169 * 48.92997 * 4 3 2
34 34 H 1.08999 * 109.47861 * 168.93687 * 4 3 2
35 35 H 1.09005 * 109.46815 * 305.07009 * 5 4 3
36 36 H 1.09002 * 109.46953 * 65.06593 * 5 4 3
37 37 H 1.08001 * 120.00075 * 0.02562 * 7 6 5
38 38 H 1.07996 * 120.00462 * 180.23122 * 8 7 6
39 39 H 1.07995 * 119.99918 * 179.72343 * 9 8 7
40 40 H 1.07994 * 119.99703 * 179.97438 * 10 9 8
41 41 H 1.08001 * 119.99950 * 179.97438 * 11 10 9
42 42 H 1.08993 * 109.47482 * 306.04782 * 12 3 2
43 43 H 1.09000 * 109.47524 * 186.04280 * 12 3 2
44 44 H 1.08001 * 119.96347 * 359.97438 * 14 13 12
45 45 H 1.08003 * 120.03216 * 180.02562 * 15 14 13
46 46 H 0.97000 * 120.00009 * 180.02562 * 21 20 18
47 47 H 1.07999 * 120.03155 * 179.72517 * 26 16 15
48 48 H 1.08003 * 119.96389 * 180.27808 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3849 0.0000
4 6 1.5312 2.1160 -1.1768
5 6 2.2387 1.5963 -2.4300
6 6 1.8311 2.4283 -3.6185
7 6 0.7331 2.0623 -4.3745
8 6 0.3563 2.8281 -5.4619
9 6 1.0837 3.9542 -5.7996
10 6 2.1848 4.3172 -5.0467
11 6 2.5581 3.5545 -3.9559
12 6 1.6456 2.0757 1.2413
13 6 2.3635 1.4416 2.4049
14 6 3.6057 1.9129 2.7891
15 6 4.2657 1.3343 3.8552
16 6 3.6813 0.2778 4.5414
17 8 4.3274 -0.2926 5.5901
18 6 5.4786 0.2859 5.9879
19 1 5.8894 1.1125 5.4273
20 6 6.1350 -0.1805 7.1166
21 7 5.6344 -1.1873 7.7998
22 14 7.7301 0.6205 7.6673
23 1 7.4877 2.0559 7.9608
24 1 8.2282 -0.0581 8.8907
25 1 8.7429 0.5002 6.5879
26 6 2.4366 -0.1973 4.1491
27 6 1.7791 0.3891 3.0857
28 1 -0.3634 0.5918 0.8402
29 1 -0.3633 0.4317 -0.9326
30 1 -0.3634 -1.0235 0.0924
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 0.4563 1.9656 -1.2778
34 1 1.7396 3.1791 -1.0566
35 1 3.3179 1.6636 -2.2922
36 1 1.9584 0.5568 -2.6007
37 1 0.1672 1.1803 -4.1131
38 1 -0.5037 2.5444 -6.0503
39 1 0.7920 4.5500 -6.6517
40 1 2.7533 5.1966 -5.3107
41 1 3.4186 3.8379 -3.3679
42 1 0.5690 1.9957 1.3915
43 1 1.9255 3.1267 1.1709
44 1 4.0599 2.7343 2.2548
45 1 5.2356 1.7031 4.1551
46 1 6.0934 -1.5133 8.5896
47 1 1.9815 -1.0217 4.6779
48 1 0.8092 0.0229 2.7830
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000729267314.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:01:51
Heat of formation + Delta-G solvation = 21.843887 kcal
Electronic energy + Delta-G solvation = -26118.863768 eV
Core-core repulsion = 22525.121181 eV
Total energy + Delta-G solvation = -3593.742587 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-39.71516 -39.19264 -38.12562 -36.20649 -33.49945 -32.29565 -31.13623 -30.84164
-30.07076 -29.81800 -27.67076 -25.58138 -24.57062 -24.00990 -22.81037 -21.93084
-21.57089 -20.49496 -19.60133 -17.97056 -17.06867 -16.87713 -16.17395 -15.93018
-15.30574 -15.10124 -14.76100 -14.50261 -14.45471 -14.04544 -13.66546 -13.54814
-13.52077 -13.35069 -13.07283 -12.88733 -12.77465 -12.60725 -12.41149 -12.08458
-11.82485 -11.63842 -11.47915 -11.41017 -11.19941 -11.16981 -11.01409 -10.69655
-10.65400 -10.58403 -10.42583 -10.40238 -9.30192 -9.17140 -8.93245 -8.80577
-8.18550 -8.10132 -7.13548 -6.42867 -4.01595 1.10755 1.15132 2.24932
2.32831 3.14694 3.15430 3.18353 3.52524 3.98552 4.02640 4.59170
4.62865 4.70736 4.76711 4.88678 4.93486 5.08143 5.12161 5.13094
5.22187 5.28308 5.28767 5.33168 5.36209 5.43230 5.47929 5.54314
5.67275 5.72304 5.76274 5.81970 5.86792 5.90886 5.92846 6.02700
6.10808 6.22329 6.24485 6.26256 6.29013 6.43995 6.46849 6.73766
6.76701 6.93984 7.07376 7.14537 7.20080 7.32242 7.45603 7.48178
7.86552 8.02371 9.02854 9.73435 10.75141
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.022781 B = 0.002070 C = 0.001943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1228.789232 B =13521.641460 C =14405.001318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.044 3.956
3 N -0.530 5.530
4 C 0.057 3.943
5 C -0.078 4.078
6 C -0.075 4.075
7 C -0.118 4.118
8 C -0.120 4.120
9 C -0.129 4.129
10 C -0.119 4.119
11 C -0.116 4.116
12 C 0.110 3.890
13 C -0.176 4.176
14 C -0.050 4.050
15 C -0.235 4.235
16 C 0.155 3.845
17 O -0.179 6.179
18 C -0.391 4.391
19 H 0.091 0.909
20 C 0.039 3.961
21 N -0.864 5.864
22 Si 0.940 3.060
23 H -0.270 1.270
24 H -0.278 1.278
25 H -0.270 1.270
26 C -0.194 4.194
27 C -0.069 4.069
28 H 0.059 0.941
29 H 0.053 0.947
30 H 0.059 0.941
31 H 0.070 0.930
32 H 0.087 0.913
33 H 0.039 0.961
34 H 0.070 0.930
35 H 0.082 0.918
36 H 0.071 0.929
37 H 0.119 0.881
38 H 0.119 0.881
39 H 0.118 0.882
40 H 0.120 0.880
41 H 0.123 0.877
42 H 0.036 0.964
43 H 0.071 0.929
44 H 0.106 0.894
45 H 0.126 0.874
46 H 0.270 0.730
47 H 0.115 0.885
48 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.694 7.976 -23.003 26.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.252 4.252
2 C -0.084 4.084
3 N -0.253 5.253
4 C -0.071 4.071
5 C -0.115 4.115
6 C -0.076 4.076
7 C -0.136 4.136
8 C -0.138 4.138
9 C -0.147 4.147
10 C -0.137 4.137
11 C -0.134 4.134
12 C -0.017 4.017
13 C -0.178 4.178
14 C -0.069 4.069
15 C -0.254 4.254
16 C 0.101 3.899
17 O -0.082 6.082
18 C -0.467 4.467
19 H 0.109 0.891
20 C -0.165 4.165
21 N -0.499 5.499
22 Si 0.765 3.235
23 H -0.195 1.195
24 H -0.203 1.203
25 H -0.195 1.195
26 C -0.214 4.214
27 C -0.087 4.087
28 H 0.078 0.922
29 H 0.072 0.928
30 H 0.078 0.922
31 H 0.088 0.912
32 H 0.105 0.895
33 H 0.057 0.943
34 H 0.089 0.911
35 H 0.101 0.899
36 H 0.089 0.911
37 H 0.137 0.863
38 H 0.137 0.863
39 H 0.136 0.864
40 H 0.138 0.862
41 H 0.141 0.859
42 H 0.054 0.946
43 H 0.089 0.911
44 H 0.124 0.876
45 H 0.143 0.857
46 H 0.080 0.920
47 H 0.133 0.867
48 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -9.157 7.629 -22.657 25.601
hybrid contribution -0.079 0.450 0.247 0.519
sum -9.237 8.079 -22.410 25.550
Atomic orbital electron populations
1.22434 0.98825 1.02256 1.01680 1.22223 0.92349 0.90520 1.03314
1.62270 1.59331 1.02220 1.01453 1.22106 0.97103 0.98145 0.89769
1.20603 1.01792 0.98212 0.90916 1.19960 0.95260 0.95809 0.96566
1.21080 0.96933 1.00005 0.95625 1.21139 0.99782 0.95475 0.97429
1.21135 0.96095 0.97432 1.00035 1.21163 0.97198 0.99719 0.95642
1.21128 1.00004 0.94924 0.97312 1.20835 0.96613 0.96947 0.87297
1.19053 0.97409 1.01530 0.99787 1.20556 0.93479 0.97916 0.94938
1.21152 1.02561 1.01451 1.00277 1.19391 0.91215 0.90908 0.88343
1.83975 1.34888 1.48629 1.40739 1.21274 0.97876 1.16806 1.10768
0.89131 1.25283 0.99557 0.96484 0.95220 1.70032 1.38953 1.23848
1.17039 0.85790 0.80243 0.79008 0.78445 1.19522 1.20312 1.19506
1.20165 0.94947 1.04675 1.01570 1.20484 0.98213 0.95288 0.94753
0.92232 0.92813 0.92202 0.91171 0.89473 0.94305 0.91134 0.89947
0.91090 0.86271 0.86287 0.86357 0.86188 0.85896 0.94558 0.91104
0.87587 0.85678 0.92018 0.86717 0.87522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.97 9.22 37.16 0.34 -1.62 16
2 C 0.04 0.52 5.56 -3.83 -0.02 0.50 16
3 N -0.53 -6.56 4.66 -236.07 -1.10 -7.67 16
4 C 0.06 0.58 4.77 -3.82 -0.02 0.56 16
5 C -0.08 -0.73 5.27 -27.88 -0.15 -0.88 16
6 C -0.08 -0.70 5.13 -104.62 -0.54 -1.23 16
7 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16
8 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16
9 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16
10 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16
11 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16
12 C 0.11 1.47 4.95 -4.97 -0.02 1.45 16
13 C -0.18 -2.97 4.90 -104.57 -0.51 -3.48 16
14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16
15 C -0.24 -5.13 9.17 -39.40 -0.36 -5.49 16
16 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16
17 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16
18 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16
19 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16
20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16
21 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16
22 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16
23 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16
24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16
26 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16
27 C -0.07 -1.20 7.88 -39.61 -0.31 -1.52 16
28 H 0.06 0.64 5.95 -51.93 -0.31 0.34 16
29 H 0.05 0.50 6.44 -51.93 -0.33 0.17 16
30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.07 0.77 6.81 -51.93 -0.35 0.42 16
32 H 0.09 1.23 5.82 -51.93 -0.30 0.92 16
33 H 0.04 0.39 5.86 -51.93 -0.30 0.09 16
34 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16
35 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16
36 H 0.07 0.65 6.91 -51.93 -0.36 0.29 16
37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16
38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16
40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16
41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16
42 H 0.04 0.46 6.02 -51.93 -0.31 0.15 16
43 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16
44 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16
45 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16
46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
47 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16
48 H 0.11 1.59 7.73 -52.48 -0.41 1.19 16
LS Contribution 385.61 15.07 5.81 5.81
Total: -1.00 -30.45 385.61 -10.95 -41.40
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -7.00 Total: 5.34 kcal
Atomic # 6 Polarization: -26.27 SS G_CDS: -4.39 Total: -30.67 kcal
Atomic # 7 Polarization: -32.00 SS G_CDS: -0.34 Total: -32.34 kcal
Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -30.45 -10.95 -41.40 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000729267314.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.240 kcal
(2) G-P(sol) polarization free energy of solvation -30.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.844 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds