Wall clock time and date at job start Tue Mar 31 2020 14:01:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46895 * 109.46988 * 2 1
4 4 C 1.46898 * 111.00174 * 300.89368 * 3 2 1
5 5 C 1.53005 * 109.47280 * 288.93634 * 4 3 2
6 6 C 1.50700 * 109.47204 * 185.07192 * 5 4 3
7 7 C 1.38239 * 119.99590 * 269.72291 * 6 5 4
8 8 C 1.38236 * 119.99753 * 179.76650 * 7 6 5
9 9 C 1.38244 * 119.99968 * 0.50947 * 8 7 6
10 10 C 1.38241 * 119.99750 * 359.74530 * 9 8 7
11 11 C 1.38233 * 120.00036 * 359.97438 * 10 9 8
12 12 C 1.46899 * 111.00425 * 64.84741 * 3 2 1
13 13 C 1.50705 * 109.46889 * 66.04606 * 12 3 2
14 14 C 1.38305 * 119.93163 * 90.00102 * 13 12 3
15 15 C 1.38096 * 120.06597 * 179.97438 * 14 13 12
16 16 C 1.38874 * 119.93682 * 0.02562 * 15 14 13
17 17 O 1.35747 * 120.07492 * 180.02562 * 16 15 14
18 18 C 1.34837 * 116.99629 * 5.57746 * 17 16 15
19 19 H 1.07996 * 120.00123 * 354.93169 * 18 17 16
20 20 C 1.38651 * 119.99824 * 174.93884 * 18 17 16
21 21 N 1.31562 * 120.00107 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 119.99940 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.47150 * 60.00071 * 22 20 18
24 24 H 1.48504 * 109.47158 * 180.02562 * 22 20 18
25 25 H 1.48503 * 109.47082 * 300.00003 * 22 20 18
26 26 C 1.38887 * 119.85808 * 0.28178 * 16 15 14
27 27 C 1.38095 * 119.92933 * 359.44751 * 26 16 15
28 28 H 1.09002 * 109.47330 * 305.15803 * 1 2 3
29 29 H 1.08997 * 109.47066 * 65.15779 * 1 2 3
30 30 H 1.08998 * 109.47375 * 185.15802 * 1 2 3
31 31 H 1.09004 * 109.46802 * 240.00004 * 2 1 3
32 32 H 1.08998 * 109.46977 * 119.99874 * 2 1 3
33 33 H 1.09004 * 109.47169 * 48.92997 * 4 3 2
34 34 H 1.08999 * 109.47861 * 168.93687 * 4 3 2
35 35 H 1.09005 * 109.46815 * 305.07009 * 5 4 3
36 36 H 1.09002 * 109.46953 * 65.06593 * 5 4 3
37 37 H 1.08001 * 120.00075 * 0.02562 * 7 6 5
38 38 H 1.07996 * 120.00462 * 180.23122 * 8 7 6
39 39 H 1.07995 * 119.99918 * 179.72343 * 9 8 7
40 40 H 1.07994 * 119.99703 * 179.97438 * 10 9 8
41 41 H 1.08001 * 119.99950 * 179.97438 * 11 10 9
42 42 H 1.08993 * 109.47482 * 306.04782 * 12 3 2
43 43 H 1.09000 * 109.47524 * 186.04280 * 12 3 2
44 44 H 1.08001 * 119.96347 * 359.97438 * 14 13 12
45 45 H 1.08003 * 120.03216 * 180.02562 * 15 14 13
46 46 H 0.97000 * 120.00009 * 180.02562 * 21 20 18
47 47 H 1.07999 * 120.03155 * 179.72517 * 26 16 15
48 48 H 1.08003 * 119.96389 * 180.27808 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3849 0.0000
4 6 1.5312 2.1160 -1.1768
5 6 2.2387 1.5963 -2.4300
6 6 1.8311 2.4283 -3.6185
7 6 0.7331 2.0623 -4.3745
8 6 0.3563 2.8281 -5.4619
9 6 1.0837 3.9542 -5.7996
10 6 2.1848 4.3172 -5.0467
11 6 2.5581 3.5545 -3.9559
12 6 1.6456 2.0757 1.2413
13 6 2.3635 1.4416 2.4049
14 6 3.6057 1.9129 2.7891
15 6 4.2657 1.3343 3.8552
16 6 3.6813 0.2778 4.5414
17 8 4.3274 -0.2926 5.5901
18 6 5.4786 0.2859 5.9879
19 1 5.8894 1.1125 5.4273
20 6 6.1350 -0.1805 7.1166
21 7 5.6344 -1.1873 7.7998
22 14 7.7301 0.6205 7.6673
23 1 7.4877 2.0559 7.9608
24 1 8.2282 -0.0581 8.8907
25 1 8.7429 0.5002 6.5879
26 6 2.4366 -0.1973 4.1491
27 6 1.7791 0.3891 3.0857
28 1 -0.3634 0.5918 0.8402
29 1 -0.3633 0.4317 -0.9326
30 1 -0.3634 -1.0235 0.0924
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 0.4563 1.9656 -1.2778
34 1 1.7396 3.1791 -1.0566
35 1 3.3179 1.6636 -2.2922
36 1 1.9584 0.5568 -2.6007
37 1 0.1672 1.1803 -4.1131
38 1 -0.5037 2.5444 -6.0503
39 1 0.7920 4.5500 -6.6517
40 1 2.7533 5.1966 -5.3107
41 1 3.4186 3.8379 -3.3679
42 1 0.5690 1.9957 1.3915
43 1 1.9255 3.1267 1.1709
44 1 4.0599 2.7343 2.2548
45 1 5.2356 1.7031 4.1551
46 1 6.0934 -1.5133 8.5896
47 1 1.9815 -1.0217 4.6779
48 1 0.8092 0.0229 2.7830
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000729267314.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:01:50
Heat of formation + Delta-G solvation = 6.238410 kcal
Electronic energy + Delta-G solvation = -26119.540472 eV
Core-core repulsion = 22525.121181 eV
Total energy + Delta-G solvation = -3594.419291 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.178 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-40.91797 -40.25583 -39.36665 -37.74444 -34.44598 -34.10323 -32.15269 -31.71747
-31.60684 -30.79529 -28.72956 -27.40584 -25.81080 -24.90019 -23.57448 -23.40274
-22.61041 -21.62410 -20.62260 -19.83304 -18.78512 -17.65844 -17.08886 -16.80858
-16.44199 -16.24008 -16.09480 -15.86111 -15.72586 -15.46520 -15.12324 -14.75059
-14.59892 -14.31470 -14.20784 -13.93349 -13.80340 -13.60675 -13.56075 -13.48638
-12.96124 -12.91136 -12.78575 -12.50117 -12.31567 -12.21449 -12.14611 -12.06613
-12.00214 -11.81411 -11.63778 -11.36538 -11.13810 -10.77030 -9.77289 -9.73355
-9.56448 -9.15391 -8.83051 -8.45768 -6.13737 0.48905 0.54956 0.62859
0.71671 1.35232 1.45995 1.51467 2.18844 2.75081 2.92084 3.08504
3.35177 3.54247 3.92368 3.97841 4.07857 4.09703 4.15899 4.20586
4.23002 4.32272 4.34789 4.36156 4.42456 4.55233 4.60486 4.64179
4.65263 4.70706 4.73030 4.74032 4.84489 5.00096 5.04388 5.09629
5.16860 5.17015 5.18863 5.24666 5.27851 5.32874 5.44708 5.59742
5.63127 5.67849 5.74359 5.79701 5.85224 6.04567 6.17097 6.19132
6.25465 6.31525 6.98941 7.80417 8.77253
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.022781 B = 0.002070 C = 0.001943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1228.789232 B =13521.641460 C =14405.001318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.043 3.957
3 N -0.541 5.541
4 C 0.063 3.937
5 C -0.069 4.069
6 C -0.087 4.087
7 C -0.128 4.128
8 C -0.127 4.127
9 C -0.135 4.135
10 C -0.128 4.128
11 C -0.130 4.130
12 C 0.112 3.888
13 C -0.149 4.149
14 C -0.051 4.051
15 C -0.244 4.244
16 C 0.113 3.887
17 O -0.234 6.234
18 C -0.413 4.413
19 H 0.100 0.900
20 C -0.024 4.024
21 N -0.921 5.921
22 Si 1.018 2.982
23 H -0.257 1.257
24 H -0.272 1.272
25 H -0.258 1.258
26 C -0.205 4.205
27 C -0.057 4.057
28 H 0.055 0.945
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.078 0.922
32 H 0.063 0.937
33 H 0.047 0.953
34 H 0.072 0.928
35 H 0.072 0.928
36 H 0.072 0.928
37 H 0.129 0.871
38 H 0.138 0.862
39 H 0.138 0.862
40 H 0.135 0.865
41 H 0.126 0.874
42 H 0.053 0.947
43 H 0.085 0.915
44 H 0.135 0.865
45 H 0.116 0.884
46 H 0.272 0.728
47 H 0.111 0.889
48 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.837 10.014 -26.007 29.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C -0.085 4.085
3 N -0.264 5.264
4 C -0.064 4.064
5 C -0.107 4.107
6 C -0.088 4.088
7 C -0.146 4.146
8 C -0.145 4.145
9 C -0.153 4.153
10 C -0.146 4.146
11 C -0.148 4.148
12 C -0.015 4.015
13 C -0.150 4.150
14 C -0.069 4.069
15 C -0.263 4.263
16 C 0.063 3.937
17 O -0.141 6.141
18 C -0.489 4.489
19 H 0.118 0.882
20 C -0.221 4.221
21 N -0.559 5.559
22 Si 0.837 3.163
23 H -0.182 1.182
24 H -0.196 1.196
25 H -0.182 1.182
26 C -0.224 4.224
27 C -0.076 4.076
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.085 0.915
31 H 0.096 0.904
32 H 0.081 0.919
33 H 0.065 0.935
34 H 0.090 0.910
35 H 0.090 0.910
36 H 0.091 0.909
37 H 0.147 0.853
38 H 0.155 0.845
39 H 0.156 0.844
40 H 0.153 0.847
41 H 0.144 0.856
42 H 0.071 0.929
43 H 0.103 0.897
44 H 0.153 0.847
45 H 0.134 0.866
46 H 0.081 0.919
47 H 0.129 0.871
48 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -10.335 9.690 -25.721 29.364
hybrid contribution 0.026 -0.099 0.829 0.835
sum -10.309 9.591 -24.892 28.599
Atomic orbital electron populations
1.22366 0.97212 1.02828 1.02149 1.22199 0.93673 0.90077 1.02555
1.62190 1.60051 1.02550 1.01616 1.22083 0.97525 0.97872 0.88912
1.20488 1.01009 0.98383 0.90816 1.19980 0.95879 0.96105 0.96820
1.21275 0.96939 1.00543 0.95873 1.21436 1.00354 0.95372 0.97366
1.21455 0.95795 0.97570 1.00473 1.21427 0.97551 1.00189 0.95416
1.21291 1.00340 0.95245 0.97923 1.20838 0.96992 0.97358 0.86325
1.19555 0.96298 0.99614 0.99538 1.20887 0.93933 0.98306 0.93822
1.21241 1.02577 1.01220 1.01245 1.19929 0.92627 0.92625 0.88512
1.83938 1.36017 1.50829 1.43274 1.21764 0.98331 1.17326 1.11458
0.88225 1.26588 1.03550 0.97043 0.94954 1.70182 1.41334 1.26272
1.18154 0.84659 0.75148 0.78279 0.78198 1.18172 1.19605 1.18211
1.20415 0.94349 1.04980 1.02703 1.20824 0.99091 0.94665 0.92995
0.92563 0.91612 0.91506 0.90390 0.91874 0.93495 0.90986 0.90982
0.90896 0.85306 0.84461 0.84430 0.84662 0.85631 0.92950 0.89665
0.84684 0.86586 0.91891 0.87116 0.84171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.16 9.22 71.98 0.66 -2.49 16
2 C 0.04 0.90 5.56 86.30 0.48 1.38 16
3 N -0.54 -11.70 4.66 -900.80 -4.20 -15.90 16
4 C 0.06 1.10 4.77 86.31 0.41 1.51 16
5 C -0.07 -1.15 5.27 29.85 0.16 -1.00 16
6 C -0.09 -1.43 5.13 -19.87 -0.10 -1.54 16
7 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16
8 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16
9 C -0.14 -1.76 10.05 22.27 0.22 -1.54 16
10 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16
11 C -0.13 -2.09 9.70 22.27 0.22 -1.88 16
12 C 0.11 2.58 4.95 85.56 0.42 3.00 16
13 C -0.15 -4.63 4.90 -19.83 -0.10 -4.73 16
14 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16
15 C -0.24 -10.83 9.17 22.39 0.21 -10.62 16
16 C 0.11 5.74 6.65 22.58 0.15 5.89 16
17 O -0.23 -14.33 9.76 -22.77 -0.22 -14.55 16
18 C -0.41 -24.43 9.49 67.92 0.64 -23.78 16
19 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16
20 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16
21 N -0.92 -57.22 13.67 21.61 0.30 -56.93 16
22 Si 1.02 43.43 29.55 68.60 2.03 45.46 16
23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16
26 C -0.21 -8.84 9.99 22.39 0.22 -8.61 16
27 C -0.06 -1.92 7.88 22.25 0.18 -1.74 16
28 H 0.06 0.99 5.95 -2.39 -0.01 0.98 16
29 H 0.06 0.97 6.44 -2.39 -0.02 0.95 16
30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.08 1.52 6.81 -2.39 -0.02 1.51 16
32 H 0.06 1.64 5.82 -2.39 -0.01 1.62 16
33 H 0.05 0.76 5.86 -2.38 -0.01 0.75 16
34 H 0.07 1.26 7.83 -2.39 -0.02 1.24 16
35 H 0.07 1.35 8.09 -2.38 -0.02 1.33 16
36 H 0.07 1.17 6.91 -2.39 -0.02 1.15 16
37 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16
38 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16
39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16
40 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16
41 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16
42 H 0.05 1.09 6.02 -2.39 -0.01 1.08 16
43 H 0.08 1.80 7.81 -2.39 -0.02 1.78 16
44 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16
45 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16
46 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
47 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16
48 H 0.14 3.76 7.73 -2.91 -0.02 3.73 16
Total: -1.00 -70.60 385.61 3.97 -66.63
By element:
Atomic # 1 Polarization: 27.75 SS G_CDS: 0.95 Total: 28.70 kcal
Atomic # 6 Polarization: -58.53 SS G_CDS: 5.12 Total: -53.41 kcal
Atomic # 7 Polarization: -68.92 SS G_CDS: -3.91 Total: -72.83 kcal
Atomic # 8 Polarization: -14.33 SS G_CDS: -0.22 Total: -14.55 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal
Total: -70.60 3.97 -66.63 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000729267314.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.872 kcal
(2) G-P(sol) polarization free energy of solvation -70.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds