Wall clock time and date at job start Tue Mar 31 2020 16:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48501 * 109.46681 * 240.00031 * 3 2 1 5 5 H 1.48501 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46784 * 119.99997 * 3 2 1 7 7 C 1.37878 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99919 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46935 * 173.99846 * 9 7 2 11 11 C 1.46898 * 110.99907 * 178.63567 * 10 9 7 12 12 C 1.50705 * 109.46715 * 199.98745 * 11 10 9 13 13 C 1.38275 * 119.93472 * 84.19625 * 12 11 10 14 14 C 1.38127 * 120.05998 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.93833 * 359.97408 * 14 13 12 16 16 N 1.40231 * 120.06702 * 180.02562 * 15 14 13 17 17 C 1.37102 * 126.47595 * 179.70882 * 16 15 14 18 18 C 1.34652 * 106.83221 * 180.26363 * 17 16 15 19 19 N 1.34117 * 108.20058 * 0.02562 * 18 17 16 20 20 C 1.30516 * 109.35186 * 359.97438 * 19 18 17 21 21 C 1.38826 * 119.86703 * 0.27545 * 15 14 13 22 22 C 1.38119 * 119.93285 * 359.47133 * 21 15 14 23 23 C 1.46902 * 110.99930 * 302.59063 * 10 9 7 24 24 C 1.54265 * 110.03601 * 93.93487 * 23 10 9 25 25 C 1.54962 * 104.15970 * 217.13328 * 24 23 10 26 26 C 1.54892 * 102.77808 * 37.89052 * 25 24 23 27 27 C 1.53877 * 110.03131 * 336.71340 * 23 10 9 28 28 H 0.96996 * 119.99988 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46547 * 54.00106 * 9 7 2 30 30 H 1.08993 * 109.47503 * 294.00066 * 9 7 2 31 31 H 1.08999 * 109.47501 * 79.98133 * 11 10 9 32 32 H 1.09005 * 109.46860 * 319.98145 * 11 10 9 33 33 H 1.07994 * 119.97172 * 0.02562 * 13 12 11 34 34 H 1.08001 * 120.03113 * 179.97438 * 14 13 12 35 35 H 1.08002 * 126.58019 * 0.24443 * 17 16 15 36 36 H 1.08003 * 125.89797 * 179.97438 * 18 17 16 37 37 H 1.07997 * 125.72094 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.03071 * 179.72224 * 21 15 14 39 39 H 1.08004 * 119.96730 * 180.23221 * 22 21 15 40 40 H 1.08999 * 110.01211 * 215.32791 * 23 10 9 41 41 H 1.08997 * 110.48570 * 335.78219 * 24 23 10 42 42 H 1.08999 * 110.48242 * 98.42239 * 24 23 10 43 43 H 1.09001 * 110.71967 * 279.57073 * 25 24 23 44 44 H 1.09002 * 110.91949 * 156.29572 * 25 24 23 45 45 H 1.08999 * 110.48627 * 203.40628 * 26 25 24 46 46 H 1.08997 * 110.59955 * 80.81639 * 26 25 24 47 47 H 1.08992 * 110.03390 * 238.57046 * 27 23 10 48 48 H 1.08993 * 110.03386 * 359.95978 * 27 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.1991 -3.6119 -0.1460 11 6 1.5019 -4.9046 -0.1176 12 6 2.4827 -5.9969 0.2230 13 6 2.7869 -6.2634 1.5453 14 6 3.6859 -7.2636 1.8605 15 6 4.2838 -8.0018 0.8483 16 7 5.1965 -9.0182 1.1652 17 6 5.8561 -9.8275 0.2766 18 6 6.6240 -10.6608 1.0039 19 7 6.4419 -10.3733 2.3012 20 6 5.5894 -9.3911 2.4109 21 6 3.9804 -7.7284 -0.4785 22 6 3.0767 -6.7306 -0.7873 23 6 2.9940 -3.4693 -1.3730 24 6 4.3229 -2.7504 -1.0613 25 6 4.5684 -1.8533 -2.3007 26 6 3.1427 -1.3638 -2.6572 27 6 2.2439 -2.5884 -2.3876 28 1 -0.4850 0.8400 0.0004 29 1 0.5460 -2.5115 -0.8317 30 1 0.7078 -2.6051 0.9384 31 1 1.0630 -5.1023 -1.0956 32 1 0.7140 -4.8760 0.6352 33 1 2.3211 -5.6891 2.3324 34 1 3.9234 -7.4711 2.8934 35 1 5.7750 -9.8018 -0.8001 36 1 7.2736 -11.4288 0.6106 37 1 5.2528 -8.9489 3.3369 38 1 4.4474 -8.2981 -1.2683 39 1 2.8374 -6.5199 -1.8192 40 1 3.1924 -4.4501 -1.8051 41 1 4.2254 -2.1412 -0.1628 42 1 5.1302 -3.4739 -0.9471 43 1 4.9934 -2.4342 -3.1193 44 1 5.2143 -1.0117 -2.0503 45 1 3.0897 -1.0755 -3.7070 46 1 2.8527 -0.5297 -2.0183 47 1 2.0792 -3.1414 -3.3122 48 1 1.2898 -2.2674 -1.9698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139360000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:04 Heat of formation + Delta-G solvation = 114.654056 kcal Electronic energy + Delta-G solvation = -27641.594681 eV Core-core repulsion = 24084.169396 eV Total energy + Delta-G solvation = -3557.425285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 6.23 seconds Orbital eigenvalues (eV) -42.43466 -39.61246 -38.46075 -35.03783 -33.70104 -32.60232 -31.38158 -30.21984 -29.49712 -28.05529 -27.21319 -26.78314 -24.35452 -23.38756 -22.47507 -21.86470 -20.73385 -20.56520 -19.89122 -18.74820 -18.14080 -16.72709 -15.65298 -15.61692 -15.51015 -15.28898 -15.13021 -14.76727 -14.42366 -14.24486 -13.88134 -13.82102 -13.59560 -13.33320 -13.09508 -12.78484 -12.64964 -12.32594 -11.92755 -11.55589 -11.18257 -11.10995 -10.93853 -10.91443 -10.70939 -10.56824 -10.45475 -10.28705 -10.27349 -10.16810 -9.97269 -9.56506 -9.23418 -9.08570 -8.86969 -8.84560 -8.43856 -8.22710 -7.24409 -6.08321 -4.04905 0.78969 1.25840 2.17914 2.53313 2.94040 3.27078 3.32986 3.35299 3.68310 4.37174 4.42909 4.52011 4.58233 4.77284 4.85512 5.01934 5.08297 5.20108 5.26765 5.32528 5.43399 5.43697 5.50470 5.58906 5.69163 5.76571 5.80285 5.96184 6.02627 6.06796 6.21503 6.27594 6.30238 6.33525 6.40908 6.52428 6.53542 6.62444 6.68908 6.69361 6.71852 6.83159 6.94434 6.97305 7.12273 7.31177 7.37351 7.56228 7.80529 7.87199 8.02100 8.13097 8.48699 9.01067 9.55450 11.02879 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.002871 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.298058 B = 9749.057824 C =10034.531195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.186 3.814 10 N -0.527 5.527 11 C 0.084 3.916 12 C -0.056 4.056 13 C -0.070 4.070 14 C -0.131 4.131 15 C 0.114 3.886 16 N -0.403 5.403 17 C -0.054 4.054 18 C -0.029 4.029 19 N -0.490 5.490 20 C 0.187 3.813 21 C -0.130 4.130 22 C -0.091 4.091 23 C 0.098 3.902 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.157 4.157 28 H 0.261 0.739 29 H 0.009 0.991 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.208 0.792 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.093 0.907 47 H 0.029 0.971 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 -14.746 -1.872 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.143 4.143 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.097 0.903 9 C 0.062 3.938 10 N -0.250 5.250 11 C -0.044 4.044 12 C -0.058 4.058 13 C -0.089 4.089 14 C -0.151 4.151 15 C 0.022 3.978 16 N -0.081 5.081 17 C -0.185 4.185 18 C -0.175 4.175 19 N -0.208 5.208 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.110 4.110 23 C -0.011 4.011 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.195 4.195 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.224 0.776 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.112 0.888 47 H 0.048 0.952 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.071 -14.952 -0.835 16.561 hybrid contribution -0.435 1.326 -1.492 2.043 sum 6.636 -13.627 -2.328 15.334 Atomic orbital electron populations 1.69928 1.05943 1.26774 1.51217 1.24910 0.94699 0.98867 0.95872 0.86821 0.79734 0.83549 0.78853 1.19871 1.21482 1.20200 1.21417 0.94296 0.89392 1.49006 0.90294 1.19965 0.90471 0.87497 0.95866 1.62426 1.26218 1.00714 1.35669 1.21075 0.93725 0.89373 1.00194 1.20137 0.97221 0.95506 0.92887 1.20943 0.96004 0.95208 0.96757 1.20788 0.99013 0.97287 0.97995 1.17776 0.93976 0.91323 0.94756 1.43236 1.31551 1.25412 1.07927 1.22761 1.01360 0.97288 0.97077 1.22320 1.03488 1.02613 0.89091 1.70313 1.16335 1.13942 1.20179 1.25242 0.98285 0.97049 0.88875 1.20732 1.00476 1.00107 0.93692 1.20963 0.95788 0.94619 0.99596 1.22061 0.93789 0.96322 0.88910 1.22583 0.95143 0.97806 0.99193 1.22448 0.97588 0.98577 0.97530 1.22410 0.93766 0.99895 0.99217 1.22916 1.03334 0.96340 0.96870 0.92940 0.97355 0.95652 0.94515 0.90278 0.84612 0.85417 0.80721 0.81054 0.77597 0.85698 0.85406 0.93140 0.88832 0.94039 0.93361 0.92800 0.94497 0.88849 0.95187 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.29 55.43 0.74 -24.03 16 2 C 0.06 1.49 5.14 -17.82 -0.09 1.40 16 3 Si 0.88 20.33 28.51 -169.99 -4.85 15.48 16 4 H -0.27 -6.12 7.09 56.52 0.40 -5.72 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.50 -12.36 5.23 -34.44 -0.18 -12.54 16 8 H 0.08 1.92 3.92 -52.49 -0.21 1.72 16 9 C 0.19 4.26 4.16 -4.97 -0.02 4.24 16 10 N -0.53 -9.93 4.36 -228.17 -1.00 -10.92 16 11 C 0.08 1.32 5.02 -4.97 -0.02 1.29 16 12 C -0.06 -0.76 5.14 -104.59 -0.54 -1.30 16 13 C -0.07 -0.88 9.72 -39.61 -0.38 -1.26 16 14 C -0.13 -1.47 9.47 -39.41 -0.37 -1.85 16 15 C 0.11 1.32 6.63 -83.58 -0.55 0.77 16 16 N -0.40 -4.61 2.99 -62.10 -0.19 -4.79 16 17 C -0.05 -0.55 10.86 -16.46 -0.18 -0.73 16 18 C -0.03 -0.31 11.85 -17.82 -0.21 -0.52 16 19 N -0.49 -6.31 11.24 -14.48 -0.16 -6.47 16 20 C 0.19 2.11 11.92 -89.63 -1.07 1.05 16 21 C -0.13 -1.46 9.47 -39.41 -0.37 -1.83 16 22 C -0.09 -1.09 8.58 -39.61 -0.34 -1.43 16 23 C 0.10 1.75 2.72 -66.59 -0.18 1.57 16 24 C -0.11 -1.97 5.88 -25.03 -0.15 -2.11 16 25 C -0.12 -2.11 6.90 -24.70 -0.17 -2.28 16 26 C -0.12 -2.21 6.17 -25.07 -0.15 -2.36 16 27 C -0.16 -3.00 5.63 -25.61 -0.14 -3.14 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.01 0.22 5.83 -51.93 -0.30 -0.08 16 30 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 31 H 0.04 0.56 7.90 -51.93 -0.41 0.15 16 32 H 0.08 1.22 7.84 -51.93 -0.41 0.82 16 33 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.13 1.13 6.77 -52.49 -0.36 0.78 16 35 H 0.18 1.30 7.15 -52.49 -0.38 0.93 16 36 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.21 1.68 7.07 -52.49 -0.37 1.31 16 38 H 0.13 1.14 6.82 -52.49 -0.36 0.78 16 39 H 0.13 1.42 7.44 -52.48 -0.39 1.02 16 40 H 0.05 0.82 5.74 -51.93 -0.30 0.53 16 41 H 0.09 1.91 5.39 -51.93 -0.28 1.63 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 2.06 4.68 -51.93 -0.24 1.81 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.11 2.47 3.99 -51.93 -0.21 2.27 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -28.47 365.90 -11.79 -40.27 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.72 Total: 5.99 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -5.14 Total: -21.04 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.61 Total: -46.21 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.85 Total: 15.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.47 -11.79 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139360000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.921 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds