Wall clock time and date at job start Tue Mar 31 2020 15:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48501 * 109.46681 * 240.00031 * 3 2 1 5 5 H 1.48501 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46784 * 119.99997 * 3 2 1 7 7 C 1.37878 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99919 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46935 * 173.99846 * 9 7 2 11 11 C 1.46898 * 110.99907 * 178.63567 * 10 9 7 12 12 C 1.50705 * 109.46715 * 199.98745 * 11 10 9 13 13 C 1.38275 * 119.93472 * 84.19625 * 12 11 10 14 14 C 1.38127 * 120.05998 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.93833 * 359.97408 * 14 13 12 16 16 N 1.40231 * 120.06702 * 180.02562 * 15 14 13 17 17 C 1.37102 * 126.47595 * 179.70882 * 16 15 14 18 18 C 1.34652 * 106.83221 * 180.26363 * 17 16 15 19 19 N 1.34117 * 108.20058 * 0.02562 * 18 17 16 20 20 C 1.30516 * 109.35186 * 359.97438 * 19 18 17 21 21 C 1.38826 * 119.86703 * 0.27545 * 15 14 13 22 22 C 1.38119 * 119.93285 * 359.47133 * 21 15 14 23 23 C 1.46902 * 110.99930 * 302.59063 * 10 9 7 24 24 C 1.54265 * 110.03601 * 93.93487 * 23 10 9 25 25 C 1.54962 * 104.15970 * 217.13328 * 24 23 10 26 26 C 1.54892 * 102.77808 * 37.89052 * 25 24 23 27 27 C 1.53877 * 110.03131 * 336.71340 * 23 10 9 28 28 H 0.96996 * 119.99988 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46547 * 54.00106 * 9 7 2 30 30 H 1.08993 * 109.47503 * 294.00066 * 9 7 2 31 31 H 1.08999 * 109.47501 * 79.98133 * 11 10 9 32 32 H 1.09005 * 109.46860 * 319.98145 * 11 10 9 33 33 H 1.07994 * 119.97172 * 0.02562 * 13 12 11 34 34 H 1.08001 * 120.03113 * 179.97438 * 14 13 12 35 35 H 1.08002 * 126.58019 * 0.24443 * 17 16 15 36 36 H 1.08003 * 125.89797 * 179.97438 * 18 17 16 37 37 H 1.07997 * 125.72094 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.03071 * 179.72224 * 21 15 14 39 39 H 1.08004 * 119.96730 * 180.23221 * 22 21 15 40 40 H 1.08999 * 110.01211 * 215.32791 * 23 10 9 41 41 H 1.08997 * 110.48570 * 335.78219 * 24 23 10 42 42 H 1.08999 * 110.48242 * 98.42239 * 24 23 10 43 43 H 1.09001 * 110.71967 * 279.57073 * 25 24 23 44 44 H 1.09002 * 110.91949 * 156.29572 * 25 24 23 45 45 H 1.08999 * 110.48627 * 203.40628 * 26 25 24 46 46 H 1.08997 * 110.59955 * 80.81639 * 26 25 24 47 47 H 1.08992 * 110.03390 * 238.57046 * 27 23 10 48 48 H 1.08993 * 110.03386 * 359.95978 * 27 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.1991 -3.6119 -0.1460 11 6 1.5019 -4.9046 -0.1176 12 6 2.4827 -5.9969 0.2230 13 6 2.7869 -6.2634 1.5453 14 6 3.6859 -7.2636 1.8605 15 6 4.2838 -8.0018 0.8483 16 7 5.1965 -9.0182 1.1652 17 6 5.8561 -9.8275 0.2766 18 6 6.6240 -10.6608 1.0039 19 7 6.4419 -10.3733 2.3012 20 6 5.5894 -9.3911 2.4109 21 6 3.9804 -7.7284 -0.4785 22 6 3.0767 -6.7306 -0.7873 23 6 2.9940 -3.4693 -1.3730 24 6 4.3229 -2.7504 -1.0613 25 6 4.5684 -1.8533 -2.3007 26 6 3.1427 -1.3638 -2.6572 27 6 2.2439 -2.5884 -2.3876 28 1 -0.4850 0.8400 0.0004 29 1 0.5460 -2.5115 -0.8317 30 1 0.7078 -2.6051 0.9384 31 1 1.0630 -5.1023 -1.0956 32 1 0.7140 -4.8760 0.6352 33 1 2.3211 -5.6891 2.3324 34 1 3.9234 -7.4711 2.8934 35 1 5.7750 -9.8018 -0.8001 36 1 7.2736 -11.4288 0.6106 37 1 5.2528 -8.9489 3.3369 38 1 4.4474 -8.2981 -1.2683 39 1 2.8374 -6.5199 -1.8192 40 1 3.1924 -4.4501 -1.8051 41 1 4.2254 -2.1412 -0.1628 42 1 5.1302 -3.4739 -0.9471 43 1 4.9934 -2.4342 -3.1193 44 1 5.2143 -1.0117 -2.0503 45 1 3.0897 -1.0755 -3.7070 46 1 2.8527 -0.5297 -2.0183 47 1 2.0792 -3.1414 -3.3122 48 1 1.2898 -2.2674 -1.9698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139360000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:57 Heat of formation + Delta-G solvation = 101.958801 kcal Electronic energy + Delta-G solvation = -27642.145189 eV Core-core repulsion = 24084.169396 eV Total energy + Delta-G solvation = -3557.975792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 4.76 seconds Orbital eigenvalues (eV) -43.24518 -40.78747 -39.71394 -36.22653 -35.05793 -34.31578 -32.26074 -31.35577 -30.34686 -29.56871 -28.87379 -28.07839 -25.73885 -24.28546 -23.91479 -23.11229 -21.59810 -21.50273 -21.27954 -19.78958 -19.43591 -18.51911 -17.01001 -16.90099 -16.55053 -16.43579 -16.23484 -16.13963 -15.73141 -15.27381 -15.10808 -14.64568 -14.59296 -14.57581 -14.35071 -14.07615 -13.78486 -13.68274 -13.46545 -13.01443 -12.83141 -12.69100 -12.36890 -12.34468 -12.05202 -12.03859 -11.69034 -11.64645 -11.53893 -11.50808 -11.24470 -11.10644 -10.85089 -10.61568 -10.38370 -9.97675 -9.66685 -9.15148 -8.80330 -8.08787 -6.08619 -0.10428 0.37204 1.33473 1.42317 1.43792 1.49194 1.72093 2.12442 2.45169 2.74916 3.26580 3.46302 3.65213 3.73733 3.81239 3.89737 4.00407 4.01710 4.03976 4.17941 4.32731 4.41019 4.50512 4.53877 4.61587 4.71556 4.72109 4.79781 4.83260 4.88089 4.95721 4.99974 5.02926 5.05755 5.16080 5.23834 5.26921 5.28888 5.33556 5.40558 5.47302 5.56966 5.69523 5.73927 5.77554 5.82308 5.91044 5.96441 6.22855 6.29769 6.46461 6.79021 7.00323 7.06222 7.55466 9.02817 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.002871 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.298058 B = 9749.057824 C =10034.531195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.011 3.989 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.202 3.798 10 N -0.530 5.530 11 C 0.087 3.913 12 C -0.072 4.072 13 C -0.080 4.080 14 C -0.130 4.130 15 C 0.112 3.888 16 N -0.410 5.410 17 C -0.055 4.055 18 C -0.045 4.045 19 N -0.523 5.523 20 C 0.177 3.823 21 C -0.127 4.127 22 C -0.091 4.091 23 C 0.100 3.900 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.155 4.155 28 H 0.257 0.743 29 H -0.012 1.012 30 H -0.004 1.004 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.204 0.796 36 H 0.192 0.808 37 H 0.229 0.771 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -16.327 -3.098 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.102 0.898 9 C 0.076 3.924 10 N -0.253 5.253 11 C -0.041 4.041 12 C -0.073 4.073 13 C -0.099 4.099 14 C -0.150 4.150 15 C 0.020 3.980 16 N -0.088 5.088 17 C -0.185 4.185 18 C -0.190 4.190 19 N -0.240 5.240 20 C -0.104 4.104 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.009 4.009 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.193 4.193 28 H 0.066 0.934 29 H 0.006 0.994 30 H 0.014 0.986 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.220 0.780 36 H 0.209 0.791 37 H 0.245 0.755 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.421 -16.556 -2.067 19.161 hybrid contribution -1.128 1.687 -1.102 2.309 sum 8.293 -14.869 -3.169 17.318 Atomic orbital electron populations 1.70056 1.07373 1.27042 1.53424 1.25549 0.95174 1.01736 0.96152 0.86014 0.78672 0.80242 0.79184 1.18662 1.22045 1.19954 1.21700 0.94541 0.89974 1.46734 0.89842 1.19620 0.90509 0.88793 0.93483 1.62317 1.25493 1.00875 1.36635 1.21048 0.94243 0.88548 1.00214 1.19931 0.97836 0.95651 0.93848 1.20982 0.96583 0.95843 0.96456 1.20969 0.98232 0.96528 0.99244 1.17925 0.93769 0.91201 0.95122 1.43336 1.31668 1.25533 1.08239 1.23268 1.00479 0.96457 0.98288 1.22782 1.04132 1.03429 0.88677 1.70306 1.17357 1.14933 1.21452 1.25749 0.97987 0.96844 0.89773 1.20966 0.99824 0.99666 0.94185 1.21057 0.95649 0.94568 0.99715 1.22133 0.93353 0.97288 0.88086 1.22514 0.95681 0.97963 0.98370 1.22422 0.96193 0.98815 0.97843 1.22366 0.95294 0.98730 0.99395 1.22828 1.01642 0.96959 0.97897 0.93396 0.99441 0.98649 0.94102 0.91180 0.84939 0.83368 0.77953 0.79074 0.75466 0.83247 0.84236 0.90697 0.91754 0.92115 0.90589 0.92396 0.93075 0.92172 0.93213 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.68 13.29 21.45 0.28 -53.40 16 2 C 0.01 0.58 5.14 84.65 0.43 1.02 16 3 Si 0.93 42.38 28.51 68.60 1.96 44.34 16 4 H -0.26 -11.31 7.09 99.48 0.71 -10.61 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.49 -24.75 5.23 25.60 0.13 -24.61 16 8 H 0.08 4.11 3.92 -2.91 -0.01 4.10 16 9 C 0.20 9.60 4.16 85.56 0.36 9.96 16 10 N -0.53 -20.04 4.36 -875.79 -3.82 -23.86 16 11 C 0.09 2.72 5.02 85.56 0.43 3.15 16 12 C -0.07 -1.83 5.14 -19.85 -0.10 -1.93 16 13 C -0.08 -1.90 9.72 22.25 0.22 -1.68 16 14 C -0.13 -2.65 9.47 22.38 0.21 -2.44 16 15 C 0.11 2.28 6.63 38.08 0.25 2.54 16 16 N -0.41 -8.22 2.99 -350.38 -1.05 -9.27 16 17 C -0.05 -0.96 10.86 83.05 0.90 -0.06 16 18 C -0.04 -0.88 11.85 83.52 0.99 0.11 16 19 N -0.52 -12.58 11.24 -199.72 -2.25 -14.83 16 20 C 0.18 3.65 11.92 180.00 2.14 5.80 16 21 C -0.13 -2.39 9.47 22.38 0.21 -2.18 16 22 C -0.09 -1.94 8.58 22.25 0.19 -1.75 16 23 C 0.10 3.42 2.72 45.64 0.12 3.54 16 24 C -0.11 -3.63 5.88 31.69 0.19 -3.44 16 25 C -0.11 -3.60 6.90 31.91 0.22 -3.38 16 26 C -0.12 -4.45 6.17 31.67 0.20 -4.25 16 27 C -0.16 -5.82 5.63 31.32 0.18 -5.64 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H -0.01 -0.60 5.83 -2.39 -0.01 -0.62 16 30 H 0.00 -0.24 8.04 -2.39 -0.02 -0.26 16 31 H 0.04 1.23 7.90 -2.39 -0.02 1.21 16 32 H 0.07 2.26 7.84 -2.38 -0.02 2.24 16 33 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.15 2.29 6.77 -2.91 -0.02 2.27 16 35 H 0.20 2.18 7.15 -2.91 -0.02 2.16 16 36 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.23 3.23 7.07 -2.91 -0.02 3.21 16 38 H 0.15 2.03 6.82 -2.91 -0.02 2.02 16 39 H 0.14 2.61 7.44 -2.91 -0.02 2.59 16 40 H 0.07 2.22 5.74 -2.39 -0.01 2.20 16 41 H 0.06 2.57 5.39 -2.39 -0.01 2.56 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 46 H 0.06 2.63 4.68 -2.39 -0.01 2.62 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 3.36 3.99 -2.39 -0.01 3.35 16 Total: -1.00 -62.89 365.90 3.37 -59.52 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.97 Total: 22.74 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 7.27 Total: -25.25 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.83 Total: -101.35 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.96 Total: 44.34 kcal Total: -62.89 3.37 -59.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139360000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.478 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds