Wall clock time and date at job start Tue Mar 31 2020 16:09:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 119.99956 * 2 1
4 4 H 1.48498 * 109.47007 * 239.99978 * 3 2 1
5 5 H 1.48499 * 109.46849 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47181 * 119.99583 * 3 2 1
7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00012 * 180.02562 * 7 2 1
9 9 C 1.50699 * 120.00371 * 359.97438 * 7 2 1
10 10 N 1.46893 * 109.47402 * 177.41831 * 9 7 2
11 11 C 1.46906 * 110.99822 * 209.31624 * 10 9 7
12 12 C 1.50708 * 109.46860 * 160.88172 * 11 10 9
13 13 C 1.38296 * 119.96305 * 275.14785 * 12 11 10
14 14 C 1.38257 * 120.12530 * 179.73075 * 13 12 11
15 15 C 1.38147 * 120.06468 * 0.54195 * 14 13 12
16 16 C 1.38794 * 119.93398 * 359.73218 * 15 14 13
17 17 N 1.40233 * 120.06408 * 179.97438 * 16 15 14
18 18 C 1.37102 * 126.47430 * 0.02562 * 17 16 15
19 19 C 1.34654 * 106.83463 * 180.02562 * 18 17 16
20 20 N 1.34124 * 108.19649 * 359.97438 * 19 18 17
21 21 C 1.30519 * 109.34873 * 359.72782 * 20 19 18
22 22 C 1.38095 * 119.96737 * 95.42652 * 12 11 10
23 23 C 1.46895 * 110.99973 * 85.36310 * 10 9 7
24 24 C 1.54969 * 110.92419 * 310.11195 * 23 10 9
25 25 C 1.54262 * 104.16140 * 156.29645 * 24 23 10
26 26 C 1.53878 * 106.64177 * 336.45037 * 25 24 23
27 27 C 1.54276 * 106.59834 * 359.97296 * 26 25 24
28 28 H 0.96998 * 120.00235 * 359.97438 * 1 2 3
29 29 H 1.08999 * 109.46653 * 57.41597 * 9 7 2
30 30 H 1.09003 * 109.47107 * 297.42440 * 9 7 2
31 31 H 1.08999 * 109.46900 * 280.87407 * 11 10 9
32 32 H 1.08994 * 109.47522 * 40.88024 * 11 10 9
33 33 H 1.08000 * 119.93757 * 359.97438 * 13 12 11
34 34 H 1.08002 * 119.96640 * 180.25635 * 14 13 12
35 35 H 1.08001 * 120.02871 * 179.75369 * 15 14 13
36 36 H 1.07998 * 126.58371 * 0.02562 * 18 17 16
37 37 H 1.08006 * 125.90213 * 180.02562 * 19 18 17
38 38 H 1.08004 * 125.71320 * 180.29336 * 21 20 19
39 39 H 1.08002 * 120.03391 * 359.96677 * 22 12 11
40 40 H 1.09007 * 110.67476 * 186.81008 * 23 10 9
41 41 H 1.09001 * 110.47183 * 37.64764 * 24 23 10
42 42 H 1.08999 * 110.53261 * 274.97647 * 24 23 10
43 43 H 1.09001 * 110.03601 * 217.14352 * 25 24 23
44 44 H 1.08996 * 110.03455 * 95.75218 * 25 24 23
45 45 H 1.09000 * 110.03524 * 119.25572 * 26 25 24
46 46 H 1.09006 * 110.03523 * 240.64297 * 26 25 24
47 47 H 1.08997 * 110.48488 * 142.28571 * 27 26 25
48 48 H 1.09000 * 110.48712 * 264.80301 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2512 -2.4992 0.0017
10 7 2.2045 -3.6150 -0.0603
11 6 1.6112 -4.7775 -0.7345
12 6 2.7068 -5.7026 -1.1982
13 6 3.3311 -5.4801 -2.4120
14 6 4.3405 -6.3233 -2.8381
15 6 4.7207 -7.3976 -2.0571
16 6 4.0920 -7.6266 -0.8411
17 7 4.4754 -8.7166 -0.0464
18 6 5.4500 -9.6356 -0.3387
19 6 5.4877 -10.5044 0.6893
20 7 4.5643 -10.1308 1.5875
21 6 3.9556 -9.0578 1.1612
22 6 3.0825 -6.7749 -0.4133
23 6 2.6842 -3.9727 1.2812
24 6 3.1684 -2.7166 2.0490
25 6 3.0474 -3.1126 3.5350
26 6 1.9990 -4.2367 3.6075
27 6 1.5182 -4.4848 2.1628
28 1 -0.4850 0.8400 0.0004
29 1 0.5899 -2.5377 -0.8639
30 1 0.6599 -2.5766 0.9142
31 1 0.9588 -5.3066 -0.0398
32 1 1.0309 -4.4421 -1.5940
33 1 3.0323 -4.6437 -3.0265
34 1 4.8291 -6.1447 -3.7846
35 1 5.5065 -8.0582 -2.3924
36 1 6.0686 -9.6582 -1.2237
37 1 6.1480 -11.3547 0.7760
38 1 3.1684 -8.5313 1.6803
39 1 2.5919 -6.9504 0.5327
40 1 3.4782 -4.7171 1.2203
41 1 2.5265 -1.8638 1.8280
42 1 4.2046 -2.4907 1.7976
43 1 2.7182 -2.2566 4.1240
44 1 4.0072 -3.4731 3.9047
45 1 2.4504 -5.1428 4.0116
46 1 1.1614 -3.9264 4.2324
47 1 1.3509 -5.5485 1.9938
48 1 0.6082 -3.9196 1.9612
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141242493.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:09:17
Heat of formation + Delta-G solvation = 81.950503 kcal
Electronic energy + Delta-G solvation = -27827.078675 eV
Core-core repulsion = 24268.235257 eV
Total energy + Delta-G solvation = -3558.843417 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 325.185 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-43.26119 -40.74327 -39.59093 -36.26113 -35.18058 -34.51054 -32.58326 -30.94199
-30.02341 -29.81333 -28.94462 -28.27817 -25.90625 -24.52882 -23.85530 -23.21926
-21.72656 -21.37629 -20.90477 -20.17367 -19.06047 -18.29348 -17.33497 -17.10294
-16.72006 -16.46675 -16.44221 -15.99524 -15.60970 -15.48205 -15.13981 -14.69416
-14.62004 -14.52208 -14.34794 -14.13345 -13.87935 -13.70768 -13.20437 -12.93940
-12.86781 -12.78460 -12.45400 -12.38516 -12.25092 -12.10778 -11.93386 -11.76262
-11.66681 -11.52196 -11.31312 -11.19169 -11.11659 -10.95881 -10.48164 -9.89068
-9.67690 -9.20686 -8.86074 -8.11244 -6.14779 -0.07893 0.31167 1.34915
1.43502 1.44091 1.51770 1.70140 2.11667 2.43553 2.74247 3.18006
3.39622 3.61937 3.68333 3.80784 3.83945 3.87820 3.95048 4.08638
4.16733 4.25609 4.30561 4.42710 4.52045 4.55245 4.63752 4.67096
4.70655 4.76344 4.80133 4.82936 4.91213 4.93391 4.98071 5.03601
5.13156 5.18448 5.19559 5.33425 5.42185 5.45841 5.52293 5.54340
5.67486 5.72616 5.76032 5.83153 5.89287 6.17383 6.28003 6.51083
6.69782 6.95669 6.99554 7.48317 8.97057
Molecular weight = 325.18amu
Principal moments of inertia in cm(-1)
A = 0.015748 B = 0.003479 C = 0.003085
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1777.546972 B = 8046.266709 C = 9073.288407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.004 3.996
3 Si 0.952 3.048
4 H -0.271 1.271
5 H -0.288 1.288
6 H -0.270 1.270
7 C -0.493 4.493
8 H 0.061 0.939
9 C 0.205 3.795
10 N -0.528 5.528
11 C 0.089 3.911
12 C -0.045 4.045
13 C -0.113 4.113
14 C -0.089 4.089
15 C -0.134 4.134
16 C 0.117 3.883
17 N -0.409 5.409
18 C -0.051 4.051
19 C -0.045 4.045
20 N -0.520 5.520
21 C 0.175 3.825
22 C -0.130 4.130
23 C 0.097 3.903
24 C -0.140 4.140
25 C -0.121 4.121
26 C -0.112 4.112
27 C -0.154 4.154
28 H 0.261 0.739
29 H -0.002 1.002
30 H -0.013 1.013
31 H 0.045 0.955
32 H 0.070 0.930
33 H 0.126 0.874
34 H 0.159 0.841
35 H 0.154 0.846
36 H 0.208 0.792
37 H 0.194 0.806
38 H 0.220 0.780
39 H 0.132 0.868
40 H 0.079 0.921
41 H 0.087 0.913
42 H 0.048 0.952
43 H 0.053 0.947
44 H 0.070 0.930
45 H 0.080 0.920
46 H 0.058 0.942
47 H 0.073 0.927
48 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.477 -16.859 -2.024 19.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.194 4.194
3 Si 0.778 3.222
4 H -0.196 1.196
5 H -0.214 1.214
6 H -0.195 1.195
7 C -0.532 4.532
8 H 0.079 0.921
9 C 0.080 3.920
10 N -0.251 5.251
11 C -0.039 4.039
12 C -0.046 4.046
13 C -0.132 4.132
14 C -0.107 4.107
15 C -0.153 4.153
16 C 0.025 3.975
17 N -0.087 5.087
18 C -0.182 4.182
19 C -0.191 4.191
20 N -0.238 5.238
21 C -0.106 4.106
22 C -0.150 4.150
23 C -0.012 4.012
24 C -0.177 4.177
25 C -0.159 4.159
26 C -0.150 4.150
27 C -0.193 4.193
28 H 0.070 0.930
29 H 0.016 0.984
30 H 0.004 0.996
31 H 0.064 0.936
32 H 0.088 0.912
33 H 0.144 0.856
34 H 0.177 0.823
35 H 0.172 0.828
36 H 0.225 0.775
37 H 0.211 0.789
38 H 0.236 0.764
39 H 0.149 0.851
40 H 0.097 0.903
41 H 0.106 0.894
42 H 0.067 0.933
43 H 0.072 0.928
44 H 0.089 0.911
45 H 0.098 0.902
46 H 0.077 0.923
47 H 0.091 0.909
48 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 9.552 -16.939 -1.613 19.513
hybrid contribution -0.672 1.440 -0.204 1.602
sum 8.880 -15.499 -1.817 17.954
Atomic orbital electron populations
1.70052 1.07405 1.27479 1.52568 1.25713 0.95511 1.02364 0.95791
0.85689 0.78327 0.79218 0.78951 1.19648 1.21407 1.19540 1.21358
0.93479 0.90687 1.47634 0.92091 1.19499 0.89822 0.88561 0.94162
1.62142 1.39080 1.05522 1.18338 1.21087 0.93384 0.90874 0.98529
1.19635 0.96952 0.93723 0.94305 1.21321 0.96422 0.99438 0.96051
1.21290 0.95910 0.93074 1.00445 1.21101 1.01467 1.00065 0.92694
1.17867 0.98133 0.88716 0.92809 1.43325 1.28337 1.20581 1.16446
1.23303 0.97255 0.93133 1.04473 1.22817 1.01249 1.02969 0.92017
1.70312 1.10521 1.12326 1.30643 1.25586 1.02768 0.96372 0.85853
1.20716 0.98034 0.95351 1.00899 1.22542 0.95713 0.96292 0.86662
1.22884 1.01034 0.99787 0.94015 1.22115 0.99305 0.98213 0.96249
1.21988 0.98344 0.98827 0.95816 1.22943 0.99191 1.00514 0.96649
0.93038 0.98426 0.99565 0.93643 0.91151 0.85567 0.82346 0.82822
0.77529 0.78892 0.76400 0.85070 0.90291 0.89431 0.93338 0.92817
0.91090 0.90173 0.92307 0.90867 0.93540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16
2 C 0.00 0.21 5.46 84.66 0.46 0.67 16
3 Si 0.95 43.38 29.54 68.60 2.03 45.41 16
4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16
6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
7 C -0.49 -26.25 6.49 25.60 0.17 -26.08 16
8 H 0.06 3.25 7.16 -2.91 -0.02 3.23 16
9 C 0.21 10.09 4.23 85.56 0.36 10.46 16
10 N -0.53 -20.83 4.45 -872.35 -3.88 -24.71 16
11 C 0.09 2.91 5.00 85.56 0.43 3.34 16
12 C -0.04 -1.22 5.02 -19.88 -0.10 -1.32 16
13 C -0.11 -2.82 9.72 22.29 0.22 -2.60 16
14 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16
15 C -0.13 -2.43 9.47 22.38 0.21 -2.22 16
16 C 0.12 2.55 6.63 38.07 0.25 2.80 16
17 N -0.41 -8.77 2.99 -350.39 -1.05 -9.82 16
18 C -0.05 -0.92 10.86 83.05 0.90 -0.02 16
19 C -0.05 -0.91 11.85 83.52 0.99 0.08 16
20 N -0.52 -13.31 11.24 -199.71 -2.25 -15.55 16
21 C 0.18 4.03 11.91 180.00 2.14 6.17 16
22 C -0.13 -3.13 8.12 22.38 0.18 -2.94 16
23 C 0.10 3.39 2.84 46.24 0.13 3.52 16
24 C -0.14 -5.33 5.28 31.70 0.17 -5.16 16
25 C -0.12 -3.74 6.80 31.32 0.21 -3.52 16
26 C -0.11 -3.14 6.80 31.32 0.21 -2.92 16
27 C -0.15 -4.88 4.98 31.67 0.16 -4.73 16
28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16
29 H 0.00 -0.13 7.43 -2.39 -0.02 -0.15 16
30 H -0.01 -0.70 5.56 -2.39 -0.01 -0.71 16
31 H 0.05 1.41 6.30 -2.39 -0.02 1.40 16
32 H 0.07 2.42 7.51 -2.39 -0.02 2.40 16
33 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16
34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16
35 H 0.15 1.86 6.82 -2.91 -0.02 1.84 16
36 H 0.21 2.11 7.15 -2.91 -0.02 2.09 16
37 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16
38 H 0.22 4.03 7.07 -2.91 -0.02 4.01 16
39 H 0.13 2.90 6.68 -2.91 -0.02 2.88 16
40 H 0.08 2.59 7.01 -2.38 -0.02 2.58 16
41 H 0.09 4.09 4.45 -2.39 -0.01 4.08 16
42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
46 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16
47 H 0.07 1.95 7.51 -2.39 -0.02 1.93 16
48 H 0.05 1.77 5.99 -2.39 -0.01 1.75 16
Total: -1.00 -65.11 374.15 3.42 -61.69
By element:
Atomic # 1 Polarization: 22.02 SS G_CDS: 0.96 Total: 22.98 kcal
Atomic # 6 Polarization: -33.27 SS G_CDS: 7.32 Total: -25.95 kcal
Atomic # 7 Polarization: -97.24 SS G_CDS: -6.89 Total: -104.12 kcal
Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal
Total: -65.11 3.42 -61.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141242493.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.638 kcal
(2) G-P(sol) polarization free energy of solvation -65.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.530 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds