Wall clock time and date at job start Tue Mar 31 2020 16:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38684 * 119.27326 * 2 1 4 4 C 1.38013 * 119.62795 * 179.97438 * 3 2 1 5 5 C 1.41006 * 118.27849 * 0.02562 * 4 3 2 6 6 C 1.41020 * 120.70601 * 179.97438 * 5 4 3 7 7 H 1.08004 * 119.99578 * 150.07577 * 6 5 4 8 8 C 1.39943 * 119.99956 * 330.07653 * 6 5 4 9 9 N 1.30865 * 120.00070 * 162.09689 * 8 6 5 10 10 Si 1.86807 * 120.00066 * 342.09314 * 8 6 5 11 11 H 1.48500 * 109.47026 * 95.37471 * 10 8 6 12 12 H 1.48502 * 109.47125 * 215.37634 * 10 8 6 13 13 H 1.48500 * 109.46716 * 335.37939 * 10 8 6 14 14 C 1.41715 * 118.58866 * 359.97438 * 5 4 3 15 15 N 1.38087 * 119.90350 * 180.02562 * 14 5 4 16 16 C 1.46504 * 119.99915 * 180.02562 * 15 14 5 17 17 H 1.09003 * 109.46753 * 34.99763 * 16 15 14 18 18 C 1.53001 * 109.46789 * 275.00154 * 16 15 14 19 19 C 1.52996 * 109.47194 * 64.99957 * 18 16 15 20 20 C 1.52996 * 109.47258 * 65.00054 * 19 18 16 21 21 C 1.53008 * 109.46816 * 184.99961 * 19 18 16 22 22 C 1.50698 * 109.47161 * 154.99940 * 16 15 14 23 23 C 1.38230 * 119.61761 * 244.72748 * 22 16 15 24 24 C 1.38623 * 119.15921 * 179.75398 * 23 22 16 25 25 C 1.38670 * 118.42213 * 0.50851 * 24 23 22 26 26 C 1.38183 * 119.16453 * 359.73436 * 25 24 23 27 27 N 1.31851 * 119.61803 * 64.99931 * 22 16 15 28 28 N 1.31963 * 119.27858 * 179.72773 * 2 1 3 29 29 H 1.09002 * 109.46969 * 89.99713 * 1 2 3 30 30 H 1.09000 * 109.47081 * 330.00082 * 1 2 3 31 31 H 1.08997 * 109.47049 * 210.00254 * 1 2 3 32 32 H 1.07995 * 120.19228 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.86119 * 180.02562 * 4 3 2 34 34 H 0.97005 * 119.99940 * 180.02562 * 9 8 6 35 35 H 0.97001 * 120.00030 * 359.97438 * 15 14 5 36 36 H 1.09007 * 109.46928 * 185.00110 * 18 16 15 37 37 H 1.09004 * 109.47100 * 304.99680 * 18 16 15 38 38 H 1.08999 * 109.47147 * 304.99722 * 19 18 16 39 39 H 1.08998 * 109.47183 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.47235 * 299.99782 * 20 19 18 41 41 H 1.08999 * 109.47313 * 59.99769 * 20 19 18 42 42 H 1.08995 * 109.47225 * 60.00141 * 21 19 18 43 43 H 1.08999 * 109.46988 * 180.02562 * 21 19 18 44 44 H 1.08999 * 109.47067 * 299.99810 * 21 19 18 45 45 H 1.08000 * 120.41550 * 359.97438 * 23 22 16 46 46 H 1.08009 * 120.78795 * 180.21485 * 24 23 22 47 47 H 1.08004 * 120.42253 * 179.70759 * 25 24 23 48 48 H 1.08000 * 119.62008 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2183 0.0005 5 6 4.2409 -0.0193 0.0005 6 6 5.6502 -0.0703 0.0005 7 1 6.1605 -0.9000 0.4671 8 6 6.3875 0.9541 -0.6041 9 7 7.6549 1.1059 -0.3158 10 14 5.5624 2.1047 -1.8226 11 1 5.1167 3.3340 -1.1188 12 1 6.5272 2.4683 -2.8914 13 1 4.3873 1.4264 -2.4262 14 6 3.4737 -1.2108 0.0005 15 7 4.1074 -2.4377 0.0010 16 6 3.3163 -3.6708 0.0004 17 1 2.4120 -3.5220 -0.5897 18 6 2.9340 -4.0320 1.4372 19 6 2.0059 -2.9559 2.0039 20 6 0.6901 -2.9545 1.2232 21 6 1.7236 -3.2509 3.4785 22 6 4.1294 -4.7889 -0.5994 23 6 3.7204 -5.3712 -1.7845 24 6 4.4782 -6.3956 -2.3304 25 6 5.6183 -6.8050 -1.6556 26 6 5.9619 -6.1791 -0.4725 27 7 5.2196 -5.2041 0.0151 28 7 2.1524 -1.1510 0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8899 0.5139 32 1 1.6365 2.1399 -0.0004 33 1 4.1135 2.1487 0.0010 34 1 8.1658 1.8162 -0.7346 35 1 5.0764 -2.4831 0.0010 36 1 2.4224 -4.9945 1.4460 37 1 3.8346 -4.0937 2.0482 38 1 2.4831 -1.9801 1.9135 39 1 0.0290 -2.1875 1.6266 40 1 0.8912 -2.7444 0.1726 41 1 0.2129 -3.9303 1.3136 42 1 2.6610 -3.2518 4.0347 43 1 1.0620 -2.4844 3.8822 44 1 1.2464 -4.2266 3.5690 45 1 2.8238 -5.0300 -2.2805 46 1 4.1850 -6.8668 -3.2570 47 1 6.2299 -7.6034 -2.0494 48 1 6.8481 -6.4924 0.0594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160487825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:17 Heat of formation + Delta-G solvation = 51.670175 kcal Electronic energy + Delta-G solvation = -28533.798226 eV Core-core repulsion = 24973.641755 eV Total energy + Delta-G solvation = -3560.156471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.43330 -40.61817 -38.09657 -36.12961 -35.34860 -33.55626 -33.28547 -32.99189 -31.02242 -29.79967 -28.88116 -27.75387 -25.76674 -25.12552 -24.36613 -23.46855 -22.44243 -21.86379 -20.51994 -19.26806 -18.31545 -17.69813 -17.42466 -16.95472 -16.76027 -16.29189 -16.02632 -15.44143 -15.30608 -15.13694 -14.94471 -14.72416 -14.59028 -14.34030 -14.09463 -13.90171 -13.66521 -13.55280 -13.28593 -13.12442 -12.99108 -12.90494 -12.62098 -12.53401 -12.39379 -12.27696 -12.02018 -11.76323 -11.52550 -11.33165 -11.24798 -11.11431 -10.78124 -10.68324 -10.26845 -9.96751 -9.85628 -9.63940 -8.82958 -8.38188 -6.23286 0.15761 0.41218 0.78292 0.98424 1.24493 1.36831 1.46418 2.12139 2.62052 2.71110 3.03671 3.32322 3.62993 3.72907 4.04302 4.06449 4.18182 4.23297 4.25440 4.29062 4.32817 4.34557 4.51248 4.68095 4.69558 4.72068 4.80832 4.84598 4.86734 4.92329 4.97959 5.02389 5.04624 5.07803 5.16987 5.18241 5.26856 5.28462 5.29076 5.35530 5.45310 5.54692 5.61688 5.77562 5.79380 5.82051 5.94926 6.08604 6.28553 6.49870 6.74636 6.84183 7.05457 7.13124 7.83564 8.25437 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.005659 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.210943 B = 4946.603361 C = 6773.737043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.050 3.950 3 C -0.191 4.191 4 C -0.195 4.195 5 C -0.023 4.023 6 C -0.465 4.465 7 H 0.056 0.944 8 C 0.048 3.952 9 N -0.858 5.858 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.283 1.283 13 H -0.260 1.260 14 C 0.332 3.668 15 N -0.711 5.711 16 C 0.218 3.782 17 H 0.096 0.904 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.129 4.129 21 C -0.140 4.140 22 C 0.100 3.900 23 C -0.167 4.167 24 C -0.075 4.075 25 C -0.168 4.168 26 C 0.080 3.920 27 N -0.504 5.504 28 N -0.502 5.502 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.289 0.711 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.147 0.853 46 H 0.168 0.832 47 H 0.168 0.832 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -12.873 -3.259 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.214 4.214 4 C -0.221 4.221 5 C -0.030 4.030 6 C -0.497 4.497 7 H 0.074 0.926 8 C -0.165 4.165 9 N -0.486 5.486 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.093 3.907 15 N -0.346 5.346 16 C 0.112 3.888 17 H 0.114 0.886 18 C -0.140 4.140 19 C -0.108 4.108 20 C -0.186 4.186 21 C -0.197 4.197 22 C -0.037 4.037 23 C -0.187 4.187 24 C -0.101 4.101 25 C -0.187 4.187 26 C -0.077 4.077 27 N -0.214 5.214 28 N -0.221 5.221 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.164 0.836 46 H 0.185 0.815 47 H 0.185 0.815 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.558 -13.237 -2.472 17.111 hybrid contribution 1.417 1.248 -0.844 2.068 sum -9.140 -11.989 -3.316 15.436 Atomic orbital electron populations 1.20617 0.87786 1.03250 1.02365 1.20897 0.96899 0.87211 1.03459 1.21413 0.93689 0.99072 1.07187 1.21180 0.94947 0.96067 1.09956 1.18183 0.93902 0.91856 0.99107 1.18968 0.90265 1.06991 1.33478 0.92557 1.26621 0.95009 0.97531 0.97315 1.69750 1.10049 1.30715 1.38063 0.85523 0.78433 0.78851 0.78502 1.18801 1.20981 1.18420 1.18528 0.88569 0.85546 0.98038 1.43994 1.07640 1.01057 1.81942 1.19704 0.92354 0.80402 0.96357 0.88598 1.21847 0.98597 0.98323 0.95248 1.21042 0.96932 0.98264 0.94525 1.21981 0.94866 0.99488 1.02281 1.21809 1.00422 1.01518 0.95964 1.21472 0.92909 0.96299 0.93026 1.22212 1.02407 0.98170 0.95934 1.21988 0.93490 0.94522 1.00059 1.22514 0.98266 1.01849 0.96098 1.23228 0.98470 0.91350 0.94659 1.67416 1.05681 1.13434 1.34859 1.66901 1.06405 1.29013 1.19751 0.91265 0.90793 0.90375 0.85599 0.88351 0.90112 0.76500 0.91361 0.93780 0.93272 0.93487 0.90258 0.93726 0.94490 0.92957 0.91853 0.83565 0.81480 0.81491 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.31 10.10 71.24 0.72 -1.59 16 2 C 0.05 1.90 6.78 42.65 0.29 2.19 16 3 C -0.19 -7.90 9.69 22.32 0.22 -7.68 16 4 C -0.20 -9.41 7.28 22.89 0.17 -9.24 16 5 C -0.02 -1.18 5.12 -21.06 -0.11 -1.29 16 6 C -0.47 -26.09 8.94 23.37 0.21 -25.88 16 7 H 0.06 3.40 7.03 -2.91 -0.02 3.38 16 8 C 0.05 2.63 5.42 85.25 0.46 3.09 16 9 N -0.86 -48.21 13.93 21.83 0.30 -47.90 16 10 Si 0.96 44.45 24.53 68.60 1.68 46.13 16 11 H -0.26 -11.55 6.71 99.48 0.67 -10.88 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.26 -12.38 6.85 99.48 0.68 -11.70 16 14 C 0.33 15.24 6.07 134.06 0.81 16.05 16 15 N -0.71 -30.02 5.06 -326.68 -1.65 -31.67 16 16 C 0.22 7.44 2.49 44.24 0.11 7.55 16 17 H 0.10 3.23 5.64 -2.39 -0.01 3.21 16 18 C -0.10 -3.28 4.16 30.59 0.13 -3.16 16 19 C -0.09 -2.91 2.37 -10.79 -0.03 -2.94 16 20 C -0.13 -3.69 6.91 71.98 0.50 -3.19 16 21 C -0.14 -4.00 9.19 71.98 0.66 -3.34 16 22 C 0.10 3.14 5.62 42.55 0.24 3.38 16 23 C -0.17 -4.15 9.71 22.36 0.22 -3.94 16 24 C -0.07 -1.43 10.18 22.47 0.23 -1.20 16 25 C -0.17 -3.16 10.11 22.36 0.23 -2.94 16 26 C 0.08 1.98 11.18 84.67 0.95 2.93 16 27 N -0.50 -16.21 9.95 -183.89 -1.83 -18.04 16 28 N -0.50 -20.25 3.89 -179.57 -0.70 -20.95 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.78 8.07 -2.39 -0.02 1.76 16 31 H 0.08 2.04 5.01 -2.39 -0.01 2.03 16 32 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.10 4.79 4.82 -2.91 -0.01 4.77 16 34 H 0.29 14.75 8.30 -92.70 -0.77 13.98 16 35 H 0.40 18.54 6.86 -92.71 -0.64 17.90 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.04 1.61 8.08 -2.38 -0.02 1.59 16 38 H 0.05 2.02 5.12 -2.39 -0.01 2.00 16 39 H 0.05 1.30 6.30 -2.39 -0.02 1.28 16 40 H 0.08 2.47 4.43 -2.39 -0.01 2.46 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.15 3.14 7.95 -2.91 -0.02 3.11 16 46 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 48 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -64.23 368.05 4.08 -60.15 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: 0.28 Total: 43.49 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 6.00 Total: -31.21 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.88 Total: -118.56 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.68 Total: 46.13 kcal Total: -64.23 4.08 -60.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160487825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.820 kcal (2) G-P(sol) polarization free energy of solvation -64.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds