Wall clock time and date at job start Tue Mar 31 2020 16:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31486 * 119.81241 * 2 1 4 4 C 1.32746 * 121.73084 * 179.97438 * 3 2 1 5 5 N 1.38368 * 119.43299 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99874 * 185.68330 * 5 4 3 7 7 H 1.08994 * 109.47337 * 33.51132 * 6 5 4 8 8 C 1.53001 * 109.46868 * 153.50810 * 6 5 4 9 9 C 1.52998 * 109.47425 * 294.45700 * 8 6 5 10 10 C 1.52997 * 109.47589 * 176.12278 * 9 8 6 11 11 C 1.53006 * 109.46841 * 296.12296 * 9 8 6 12 12 C 1.50701 * 109.47461 * 273.50781 * 6 5 4 13 13 C 1.38224 * 119.61323 * 359.11615 * 12 6 5 14 14 C 1.38633 * 119.15747 * 179.97438 * 13 12 6 15 15 C 1.38675 * 118.41897 * 359.97438 * 14 13 12 16 16 C 1.38175 * 119.16396 * 0.02562 * 15 14 13 17 17 N 1.31850 * 119.61560 * 178.84270 * 12 6 5 18 18 C 1.39708 * 121.13765 * 0.02562 * 4 3 2 19 19 C 1.36568 * 119.49096 * 359.64441 * 18 4 3 20 20 C 1.40746 * 119.81748 * 179.97438 * 2 1 3 21 21 C 1.41200 * 120.57147 * 0.02562 * 20 2 1 22 22 H 1.07999 * 119.99874 * 331.60226 * 21 20 2 23 23 C 1.39876 * 120.00171 * 151.60114 * 21 20 2 24 24 N 1.30896 * 120.00079 * 350.20647 * 23 21 20 25 25 Si 1.86797 * 119.99815 * 170.20866 * 23 21 20 26 26 H 1.48494 * 109.47447 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47158 * 120.00191 * 25 23 21 28 28 H 1.48503 * 109.46707 * 240.00069 * 25 23 21 29 29 H 1.09003 * 109.47408 * 270.02773 * 1 2 3 30 30 H 1.09007 * 109.47196 * 30.02817 * 1 2 3 31 31 H 1.09001 * 109.47128 * 150.02364 * 1 2 3 32 32 H 0.96996 * 119.99806 * 5.68839 * 5 4 3 33 33 H 1.09005 * 109.47232 * 54.45264 * 8 6 5 34 34 H 1.08996 * 109.47247 * 174.45387 * 8 6 5 35 35 H 1.08996 * 109.47347 * 56.11334 * 9 8 6 36 36 H 1.09002 * 109.47026 * 59.99625 * 10 9 8 37 37 H 1.09000 * 109.47508 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.47120 * 299.99786 * 10 9 8 39 39 H 1.08998 * 109.47002 * 186.57695 * 11 9 8 40 40 H 1.09002 * 109.46744 * 306.57336 * 11 9 8 41 41 H 1.09001 * 109.47326 * 66.57253 * 11 9 8 42 42 H 1.07995 * 120.42895 * 0.02562 * 13 12 6 43 43 H 1.08000 * 120.79102 * 180.02562 * 14 13 12 44 44 H 1.08000 * 120.41610 * 180.02562 * 15 14 13 45 45 H 1.08006 * 119.61683 * 179.97438 * 16 15 14 46 46 H 1.07999 * 120.25511 * 179.97438 * 18 4 3 47 47 H 1.07998 * 120.79262 * 180.31841 * 19 18 4 48 48 H 0.96997 * 120.00409 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1853 0.0005 5 7 4.1266 2.4125 -0.0001 6 6 5.5847 2.4788 -0.1252 7 1 5.9321 1.6657 -0.7626 8 6 5.9829 3.8193 -0.7460 9 6 5.4615 3.8909 -2.1826 10 6 5.7751 5.2680 -2.7710 11 6 6.1399 2.8094 -3.0259 12 6 6.2124 2.3508 1.2390 13 6 5.4046 2.2175 2.3527 14 6 5.9920 2.0999 3.6029 15 6 7.3761 2.1204 3.6864 16 6 8.1185 2.2569 2.5290 17 7 7.5257 2.3619 1.3556 18 6 4.2494 0.0143 0.0005 19 6 3.6199 -1.1975 0.0074 20 6 2.2068 -1.2211 0.0005 21 6 1.5091 -2.4487 0.0006 22 1 0.5269 -2.5115 0.4450 23 6 2.0902 -3.5834 -0.5751 24 7 3.1877 -3.4709 -1.2795 25 14 1.2999 -5.2594 -0.3386 26 1 0.0773 -5.1174 0.4922 27 1 0.9365 -5.8265 -1.6620 28 1 2.2580 -6.1667 0.3426 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 3.6093 3.2288 0.0824 33 1 5.5517 4.6325 -0.1621 34 1 7.0690 3.9101 -0.7488 35 1 4.3833 3.7312 -2.1863 36 1 6.8534 5.4276 -2.7674 37 1 5.4040 5.3189 -3.7947 38 1 5.2918 6.0385 -2.1703 39 1 5.8581 2.9339 -4.0714 40 1 7.2219 2.8981 -2.9283 41 1 5.8232 1.8259 -2.6787 42 1 4.3296 2.2042 2.2503 43 1 5.3861 1.9941 4.4906 44 1 7.8675 2.0309 4.6439 45 1 9.1970 2.2742 2.5856 46 1 5.3282 0.0671 0.0005 47 1 4.1882 -2.1158 0.0127 48 1 3.5904 -4.2577 -1.6790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160487960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:22 Heat of formation + Delta-G solvation = 39.044252 kcal Electronic energy + Delta-G solvation = -27709.913222 eV Core-core repulsion = 24149.209250 eV Total energy + Delta-G solvation = -3560.703972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.46189 -40.36578 -38.49331 -36.28035 -35.24384 -33.54310 -33.04424 -32.62487 -31.24345 -29.40952 -28.64390 -28.02190 -26.06418 -25.37552 -24.28145 -23.08698 -22.85507 -21.60192 -20.54733 -19.09669 -18.32469 -17.95739 -17.36818 -16.89392 -16.59488 -16.31733 -15.88537 -15.47232 -15.35312 -15.19101 -15.05915 -14.74840 -14.36749 -14.32287 -13.96133 -13.68346 -13.51803 -13.46000 -13.17210 -13.05232 -12.97118 -12.93607 -12.82673 -12.58918 -12.56507 -12.50403 -12.20083 -11.69321 -11.61787 -11.49580 -11.46341 -11.21590 -10.75666 -10.60539 -10.23361 -10.01697 -9.90794 -9.79345 -8.59211 -8.37431 -6.12219 0.22128 0.38898 0.88223 1.13514 1.41346 1.54895 1.55424 2.25525 2.48149 2.85505 2.88072 3.38048 3.76197 3.79981 3.97192 3.98586 4.06152 4.09105 4.17860 4.28239 4.29169 4.44917 4.52520 4.59775 4.68034 4.68652 4.72196 4.81264 4.83621 4.87966 4.95267 5.01192 5.02280 5.07314 5.08483 5.11494 5.22142 5.25574 5.32351 5.36482 5.39475 5.45468 5.52780 5.55931 5.68708 5.82525 5.91067 6.03375 6.48970 6.61650 6.87487 6.97894 7.07869 7.14747 7.86471 8.46221 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003853 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.292629 B = 7264.932212 C = 8263.366446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.029 3.971 3 N -0.531 5.531 4 C 0.305 3.695 5 N -0.716 5.716 6 C 0.219 3.781 7 H 0.076 0.924 8 C -0.096 4.096 9 C -0.092 4.092 10 C -0.139 4.139 11 C -0.146 4.146 12 C 0.102 3.898 13 C -0.167 4.167 14 C -0.086 4.086 15 C -0.173 4.173 16 C 0.087 3.913 17 N -0.499 5.499 18 C -0.211 4.211 19 C -0.103 4.103 20 C -0.001 4.001 21 C -0.479 4.479 22 H 0.082 0.918 23 C 0.029 3.971 24 N -0.849 5.849 25 Si 0.980 3.020 26 H -0.255 1.255 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.120 0.880 43 H 0.148 0.852 44 H 0.166 0.834 45 H 0.184 0.816 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.113 12.058 4.571 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.247 5.247 4 C 0.071 3.929 5 N -0.354 5.354 6 C 0.111 3.889 7 H 0.094 0.906 8 C -0.134 4.134 9 C -0.111 4.111 10 C -0.196 4.196 11 C -0.203 4.203 12 C -0.037 4.037 13 C -0.187 4.187 14 C -0.112 4.112 15 C -0.193 4.193 16 C -0.071 4.071 17 N -0.209 5.209 18 C -0.235 4.235 19 C -0.129 4.129 20 C -0.006 4.006 21 C -0.511 4.511 22 H 0.100 0.900 23 C -0.183 4.183 24 N -0.477 5.477 25 Si 0.801 3.199 26 H -0.178 1.178 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.138 0.862 43 H 0.165 0.835 44 H 0.183 0.817 45 H 0.201 0.799 46 H 0.117 0.883 47 H 0.126 0.874 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.444 12.695 3.647 15.677 hybrid contribution -0.425 -1.801 0.741 1.993 sum 8.019 10.894 4.388 14.221 Atomic orbital electron populations 1.20241 0.88940 1.01625 1.01331 1.21317 0.96462 0.87214 1.05910 1.66482 1.07748 1.30756 1.19755 1.17830 0.87839 0.85958 1.01240 1.43621 1.04243 1.03970 1.83561 1.19426 0.79144 0.99962 0.90363 0.90643 1.21756 1.02176 0.94057 0.95450 1.21046 0.99856 0.96200 0.93965 1.21776 1.02055 0.95093 1.00715 1.21850 1.00943 0.97827 0.99728 1.21960 0.89640 0.95372 0.96731 1.22009 1.01630 1.01293 0.93812 1.21921 0.96137 0.95391 0.97777 1.22449 0.94139 1.01227 1.01442 1.23284 1.01791 0.94743 0.87241 1.67386 1.10942 1.13555 1.29055 1.20837 0.98404 0.92849 1.11374 1.21288 0.95234 0.96344 1.00081 1.18472 0.92500 0.94212 0.95372 1.19577 1.03610 0.93420 1.34502 0.89993 1.26669 0.94917 1.04388 0.92294 1.69869 1.19243 1.32517 1.26103 0.85181 0.79209 0.76606 0.78866 1.17788 1.19584 1.19600 0.91917 0.92007 0.91599 0.76572 0.90945 0.89422 0.92322 0.91912 0.92419 0.92124 0.92382 0.91702 0.95027 0.86221 0.83452 0.81681 0.79911 0.88286 0.87391 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.65 9.58 71.24 0.68 -1.97 16 2 C 0.03 1.45 6.86 43.22 0.30 1.74 16 3 N -0.53 -25.08 10.29 -179.37 -1.85 -26.93 16 4 C 0.31 13.47 6.74 133.32 0.90 14.37 16 5 N -0.72 -24.75 3.33 -327.90 -1.09 -25.84 16 6 C 0.22 6.77 1.97 44.25 0.09 6.86 16 7 H 0.08 2.70 4.87 -2.39 -0.01 2.69 16 8 C -0.10 -2.34 4.19 30.59 0.13 -2.22 16 9 C -0.09 -2.20 2.87 -10.79 -0.03 -2.23 16 10 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 11 C -0.15 -3.76 8.76 71.98 0.63 -3.13 16 12 C 0.10 3.15 5.70 42.55 0.24 3.39 16 13 C -0.17 -5.19 9.19 22.36 0.21 -4.99 16 14 C -0.09 -2.16 10.18 22.47 0.23 -1.93 16 15 C -0.17 -3.57 10.11 22.36 0.23 -3.35 16 16 C 0.09 1.96 11.18 84.67 0.95 2.91 16 17 N -0.50 -14.37 9.98 -183.89 -1.84 -16.20 16 18 C -0.21 -10.10 9.00 22.23 0.20 -9.90 16 19 C -0.10 -5.52 8.70 22.64 0.20 -5.32 16 20 C 0.00 -0.03 5.56 -21.18 -0.12 -0.15 16 21 C -0.48 -25.47 8.07 23.39 0.19 -25.28 16 22 H 0.08 4.13 6.96 -2.91 -0.02 4.11 16 23 C 0.03 1.45 5.29 85.23 0.45 1.91 16 24 N -0.85 -45.44 10.82 21.82 0.24 -45.20 16 25 Si 0.98 38.86 29.57 68.60 2.03 40.89 16 26 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 27 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 28 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.07 2.74 6.82 -2.39 -0.02 2.73 16 32 H 0.40 12.74 8.74 -92.71 -0.81 11.93 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.09 2.08 7.92 -2.39 -0.02 2.06 16 35 H 0.06 1.63 7.67 -2.39 -0.02 1.61 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.03 0.98 6.75 -2.39 -0.02 0.96 16 42 H 0.12 4.16 6.41 -2.91 -0.02 4.14 16 43 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 46 H 0.10 4.54 6.09 -2.91 -0.02 4.52 16 47 H 0.11 6.13 6.27 -2.91 -0.02 6.11 16 48 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 Total: -1.00 -62.75 384.55 3.78 -58.98 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: 0.16 Total: 45.52 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 6.12 Total: -31.21 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.54 Total: -114.17 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -62.75 3.78 -58.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160487960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.019 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds