Wall clock time and date at job start Tue Mar 31 2020 16:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38681 * 119.27440 * 2 1 4 4 C 1.38011 * 119.62318 * 179.97438 * 3 2 1 5 5 C 1.41004 * 118.28349 * 359.75119 * 4 3 2 6 6 C 1.41020 * 120.70321 * 180.24191 * 5 4 3 7 7 H 1.07998 * 119.99541 * 150.13828 * 6 5 4 8 8 C 1.39948 * 120.00415 * 330.13522 * 6 5 4 9 9 N 1.30867 * 119.99785 * 162.12195 * 8 6 5 10 10 Si 1.86801 * 119.99934 * 342.12517 * 8 6 5 11 11 H 1.48498 * 109.47271 * 95.38726 * 10 8 6 12 12 H 1.48499 * 109.47187 * 215.39073 * 10 8 6 13 13 H 1.48504 * 109.47014 * 335.38975 * 10 8 6 14 14 C 1.41703 * 118.58630 * 0.48988 * 5 4 3 15 15 N 1.38094 * 119.90340 * 179.77744 * 14 5 4 16 16 C 1.46500 * 119.99894 * 179.72652 * 15 14 5 17 17 H 1.09000 * 109.46779 * 324.71969 * 16 15 14 18 18 C 1.53001 * 109.47581 * 84.72272 * 16 15 14 19 19 C 1.50699 * 109.47210 * 204.72282 * 16 15 14 20 20 C 1.38308 * 119.96052 * 319.99805 * 19 16 15 21 21 C 1.38267 * 120.15141 * 180.02562 * 20 19 16 22 22 C 1.38128 * 120.07202 * 359.97438 * 21 20 19 23 23 C 1.38891 * 119.92565 * 0.02562 * 22 21 20 24 24 N 1.39678 * 120.07715 * 180.02562 * 23 22 21 25 25 C 1.46505 * 119.99328 * 359.97438 * 24 23 22 26 26 C 1.46488 * 120.00193 * 179.97438 * 24 23 22 27 27 C 1.38087 * 119.96296 * 139.72170 * 19 16 15 28 28 N 1.31963 * 119.27745 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47253 * 270.02179 * 1 2 3 30 30 H 1.09000 * 109.47584 * 30.01798 * 1 2 3 31 31 H 1.09004 * 109.47420 * 150.02120 * 1 2 3 32 32 H 1.07998 * 120.19137 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.85550 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99739 * 179.97438 * 9 8 6 35 35 H 0.97001 * 119.99854 * 359.44550 * 15 14 5 36 36 H 1.09007 * 109.46992 * 299.99759 * 18 16 15 37 37 H 1.08994 * 109.46767 * 59.99597 * 18 16 15 38 38 H 1.08995 * 109.46984 * 180.02562 * 18 16 15 39 39 H 1.08001 * 119.92676 * 359.97438 * 20 19 16 40 40 H 1.07993 * 119.96477 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.03833 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.47155 * 60.00643 * 25 24 23 43 43 H 1.09008 * 109.46662 * 180.02562 * 25 24 23 44 44 H 1.08990 * 109.47263 * 299.99895 * 25 24 23 45 45 H 1.08993 * 109.47512 * 89.99864 * 26 24 23 46 46 H 1.09002 * 109.47035 * 209.99674 * 26 24 23 47 47 H 1.09003 * 109.47525 * 329.99840 * 26 24 23 48 48 H 1.07990 * 120.03543 * 0.02562 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2409 -0.0195 0.0065 6 6 5.6501 -0.0704 0.0124 7 1 6.1585 -0.8994 0.4823 8 6 6.3900 0.9530 -0.5906 9 7 7.6563 1.1049 -0.2976 10 14 5.5698 2.1023 -1.8137 11 1 5.1220 3.3328 -1.1133 12 1 6.5386 2.4641 -2.8794 13 1 4.3967 1.4237 -2.4208 14 6 3.4737 -1.2109 0.0009 15 7 4.1074 -2.4378 0.0019 16 6 3.3163 -3.6708 0.0022 17 1 2.4138 -3.5232 0.5953 18 6 2.9297 -4.0293 -1.4341 19 6 4.1310 -4.7902 0.5974 20 6 5.4770 -4.8993 0.2987 21 6 6.2281 -5.9251 0.8421 22 6 5.6360 -6.8444 1.6861 23 6 4.2846 -6.7379 1.9882 24 7 3.6828 -7.6654 2.8416 25 6 4.4772 -8.7527 3.4188 26 6 2.2574 -7.5511 3.1595 27 6 3.5341 -5.7025 1.4449 28 7 2.1523 -1.1511 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6364 2.1399 0.0004 33 1 4.1134 2.1486 0.0010 34 1 8.1692 1.8141 -0.7159 35 1 5.0763 -2.4832 -0.0018 36 1 2.3404 -3.2197 -1.8646 37 1 3.8323 -4.1768 -2.0271 38 1 2.3408 -4.9465 -1.4337 39 1 5.9423 -4.1821 -0.3612 40 1 7.2790 -6.0072 0.6072 41 1 6.2233 -7.6452 2.1106 42 1 5.2877 -8.3335 4.0149 43 1 3.8411 -9.3704 4.0529 44 1 4.8935 -9.3633 2.6177 45 1 1.6762 -8.1173 2.4318 46 1 2.0749 -7.9481 4.1582 47 1 1.9603 -6.5029 3.1254 48 1 2.4840 -5.6144 1.6809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162632746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:55 Heat of formation + Delta-G solvation = 49.071358 kcal Electronic energy + Delta-G solvation = -27277.853341 eV Core-core repulsion = 23717.584177 eV Total energy + Delta-G solvation = -3560.269164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.98799 -40.40223 -38.03273 -36.33265 -35.87711 -33.69946 -33.04877 -31.49192 -30.53236 -30.12201 -29.32643 -28.78822 -25.76283 -25.66191 -24.42714 -23.19953 -22.62941 -22.26893 -20.67532 -19.27959 -18.54345 -17.87262 -17.30923 -16.76297 -16.54322 -16.31684 -15.91913 -15.59911 -15.33301 -15.24567 -15.08601 -14.95011 -14.63526 -14.26897 -14.18082 -13.97402 -13.64346 -13.45358 -13.38224 -13.31689 -13.14762 -12.97073 -12.94084 -12.84118 -12.76217 -12.50594 -12.29040 -12.21616 -12.01726 -11.78394 -11.51544 -11.24950 -10.77261 -10.64909 -9.98027 -9.88072 -9.67520 -8.84122 -8.45121 -8.18360 -6.25384 0.48403 0.69193 0.74073 0.94998 1.25773 1.37601 1.47830 2.13250 2.26046 2.67208 2.70769 2.99295 3.58197 3.71673 3.99932 4.04446 4.19269 4.28654 4.28780 4.34584 4.44865 4.46878 4.53111 4.55104 4.64944 4.67167 4.69394 4.79405 4.81663 4.86893 4.90405 4.92662 4.93044 5.00680 5.03425 5.07358 5.11884 5.27775 5.32359 5.33834 5.37889 5.55171 5.62851 5.74028 5.79589 5.94226 6.03433 6.26332 6.39194 6.46459 6.56656 6.75912 6.82717 7.02612 7.82180 8.23681 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003576 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.090573 B = 7827.466924 C = 9241.609704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.039 3.961 3 C -0.188 4.188 4 C -0.200 4.200 5 C -0.019 4.019 6 C -0.465 4.465 7 H 0.064 0.936 8 C 0.053 3.947 9 N -0.851 5.851 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.328 3.672 15 N -0.716 5.716 16 C 0.204 3.796 17 H 0.075 0.925 18 C -0.142 4.142 19 C -0.045 4.045 20 C -0.186 4.186 21 C -0.073 4.073 22 C -0.201 4.201 23 C 0.207 3.793 24 N -0.645 5.645 25 C 0.093 3.907 26 C 0.088 3.912 27 C -0.196 4.196 28 N -0.533 5.533 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.290 0.710 35 H 0.403 0.597 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 -16.109 3.755 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C -0.210 4.210 4 C -0.226 4.226 5 C -0.026 4.026 6 C -0.497 4.497 7 H 0.082 0.918 8 C -0.161 4.161 9 N -0.478 5.478 10 Si 0.784 3.216 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.187 1.187 14 C 0.088 3.912 15 N -0.353 5.353 16 C 0.099 3.901 17 H 0.094 0.906 18 C -0.201 4.201 19 C -0.047 4.047 20 C -0.207 4.207 21 C -0.091 4.091 22 C -0.224 4.224 23 C 0.105 3.895 24 N -0.357 5.357 25 C -0.049 4.049 26 C -0.054 4.054 27 C -0.219 4.219 28 N -0.252 5.252 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.241 0.759 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.883 -17.027 3.899 19.597 hybrid contribution 1.292 1.640 -0.464 2.138 sum -7.591 -15.387 3.434 17.498 Atomic orbital electron populations 1.20406 0.87623 1.02663 1.02254 1.20948 0.97069 0.87254 1.04183 1.21439 0.93891 0.98911 1.06751 1.21225 0.94891 0.96274 1.10206 1.18210 0.94137 0.91617 0.98656 1.18995 0.89932 1.07353 1.33375 0.91816 1.26575 0.94988 0.97371 0.97198 1.69731 1.09843 1.30559 1.37681 0.85569 0.78479 0.78953 0.78642 1.18649 1.20706 1.18714 1.18609 0.88266 0.86132 0.98241 1.44191 1.07892 1.01114 1.82133 1.19507 0.92943 0.81367 0.96294 0.90647 1.22040 1.01126 1.01237 0.95719 1.19764 0.94224 0.95049 0.95635 1.20790 0.94113 1.00899 1.04865 1.21080 1.00047 0.93080 0.94943 1.20829 0.93433 1.03326 1.04781 1.17882 0.92168 0.89176 0.90266 1.46546 1.09765 1.29272 1.50140 1.21740 0.96252 0.88683 0.98263 1.21787 0.79889 1.02245 1.01513 1.20554 1.00579 0.97510 1.03246 1.66615 1.07515 1.30325 1.20712 0.91154 0.90196 0.91779 0.85097 0.87813 0.89915 0.75922 0.93507 0.93146 0.90579 0.87528 0.84466 0.84290 0.92892 0.88781 0.92452 0.92758 0.89539 0.92134 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.15 71.23 0.72 -1.46 16 2 C 0.04 1.62 6.79 42.64 0.29 1.91 16 3 C -0.19 -8.04 9.69 22.32 0.22 -7.82 16 4 C -0.20 -9.80 7.27 22.89 0.17 -9.63 16 5 C -0.02 -0.98 5.13 -21.06 -0.11 -1.08 16 6 C -0.47 -25.73 8.93 23.37 0.21 -25.52 16 7 H 0.06 3.72 7.04 -2.91 -0.02 3.69 16 8 C 0.05 2.82 5.42 85.25 0.46 3.28 16 9 N -0.85 -46.61 13.93 21.83 0.30 -46.31 16 10 Si 0.96 43.92 24.53 68.60 1.68 45.61 16 11 H -0.26 -11.36 6.71 99.48 0.67 -10.69 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.26 -12.59 6.84 99.48 0.68 -11.91 16 14 C 0.33 15.81 7.49 134.05 1.00 16.82 16 15 N -0.72 -30.76 5.08 -326.70 -1.66 -32.42 16 16 C 0.20 7.29 2.78 44.25 0.12 7.42 16 17 H 0.08 2.84 7.40 -2.39 -0.02 2.82 16 18 C -0.14 -4.64 9.47 71.98 0.68 -3.96 16 19 C -0.05 -1.47 4.95 -19.88 -0.10 -1.57 16 20 C -0.19 -5.96 9.05 22.29 0.20 -5.75 16 21 C -0.07 -1.98 10.04 22.25 0.22 -1.75 16 22 C -0.20 -4.95 9.31 22.40 0.21 -4.74 16 23 C 0.21 5.29 6.55 38.21 0.25 5.54 16 24 N -0.65 -12.62 3.41 -747.31 -2.55 -15.17 16 25 C 0.09 1.23 9.40 127.77 1.20 2.43 16 26 C 0.09 1.35 10.16 127.77 1.30 2.65 16 27 C -0.20 -5.60 8.83 22.40 0.20 -5.40 16 28 N -0.53 -24.01 9.08 -179.58 -1.63 -25.64 16 29 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.10 5.04 4.81 -2.91 -0.01 5.03 16 34 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 35 H 0.40 17.86 5.16 -92.71 -0.48 17.38 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 3.62 6.91 -2.91 -0.02 3.60 16 40 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.14 2.70 6.73 -2.91 -0.02 2.68 16 42 H 0.05 0.71 7.95 -2.39 -0.02 0.69 16 43 H 0.09 0.79 7.80 -2.38 -0.02 0.78 16 44 H 0.06 0.71 7.95 -2.39 -0.02 0.69 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.09 0.92 7.92 -2.39 -0.02 0.90 16 47 H 0.06 1.05 6.19 -2.39 -0.01 1.04 16 48 H 0.13 3.35 6.11 -2.92 -0.02 3.33 16 Total: -1.00 -64.54 381.40 3.83 -60.71 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.42 Total: 41.85 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 7.25 Total: -28.64 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.53 Total: -119.54 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.61 kcal Total: -64.54 3.83 -60.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162632746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.785 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds