Wall clock time and date at job start Tue Mar 31 2020 16:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31488 * 119.81369 * 2 1 4 4 C 1.32738 * 121.73014 * 179.97438 * 3 2 1 5 5 N 1.38371 * 119.43075 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99993 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46961 * 324.99442 * 6 5 4 8 8 C 1.52999 * 109.47372 * 85.00114 * 6 5 4 9 9 C 1.50703 * 109.46809 * 204.99752 * 6 5 4 10 10 C 1.38307 * 119.96436 * 319.72875 * 9 6 5 11 11 C 1.38266 * 120.14905 * 179.72475 * 10 9 6 12 12 C 1.38127 * 120.07308 * 0.55028 * 11 10 9 13 13 C 1.38888 * 119.92496 * 359.71504 * 12 11 10 14 14 N 1.39674 * 120.07314 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00011 * 180.02562 * 14 13 12 16 16 C 1.46497 * 120.00289 * 0.03161 * 14 13 12 17 17 C 1.38086 * 119.95925 * 139.99607 * 9 6 5 18 18 C 1.39709 * 121.14005 * 0.02562 * 4 3 2 19 19 C 1.36558 * 119.49341 * 359.97413 * 18 4 3 20 20 C 1.40751 * 119.81525 * 179.97438 * 2 1 3 21 21 C 1.41199 * 120.57318 * 359.72312 * 20 2 1 22 22 H 1.08005 * 119.99655 * 334.88277 * 21 20 2 23 23 C 1.39873 * 120.00071 * 154.87800 * 21 20 2 24 24 N 1.30906 * 119.99751 * 344.03440 * 23 21 20 25 25 Si 1.86796 * 119.99856 * 164.02997 * 23 21 20 26 26 H 1.48508 * 109.46783 * 60.00485 * 25 23 21 27 27 H 1.48501 * 109.46756 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47382 * 300.00447 * 25 23 21 29 29 H 1.09001 * 109.47600 * 270.02479 * 1 2 3 30 30 H 1.08998 * 109.47181 * 30.02216 * 1 2 3 31 31 H 1.08996 * 109.47303 * 150.02278 * 1 2 3 32 32 H 0.97000 * 119.99869 * 359.97438 * 5 4 3 33 33 H 1.08995 * 109.47626 * 59.99735 * 8 6 5 34 34 H 1.08998 * 109.47001 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.46428 * 299.99786 * 8 6 5 36 36 H 1.08001 * 119.92478 * 359.96887 * 10 9 6 37 37 H 1.07995 * 119.96164 * 180.26560 * 11 10 9 38 38 H 1.08004 * 120.03817 * 179.70770 * 12 11 10 39 39 H 1.08998 * 109.47133 * 89.99986 * 15 14 13 40 40 H 1.09000 * 109.46911 * 210.00561 * 15 14 13 41 41 H 1.09004 * 109.46567 * 329.99813 * 15 14 13 42 42 H 1.09001 * 109.47039 * 59.99241 * 16 14 13 43 43 H 1.08992 * 109.47455 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.47209 * 300.00026 * 16 14 13 45 45 H 1.08001 * 120.04050 * 0.02562 * 17 9 6 46 46 H 1.08001 * 120.25590 * 180.02562 * 18 4 3 47 47 H 1.07998 * 120.79988 * 180.02562 * 19 18 4 48 48 H 0.96996 * 119.99679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 0.0005 5 7 4.1266 2.4124 0.0010 6 6 5.5903 2.4760 0.0010 7 1 5.9897 1.6506 0.5901 8 6 6.1053 2.3731 -1.4360 9 6 6.0362 3.7841 0.6020 10 6 5.3533 4.9494 0.3045 11 6 5.7557 6.1508 0.8583 12 6 6.8486 6.1925 1.7018 13 6 7.5400 5.0250 1.9983 14 7 8.6459 5.0637 2.8506 15 6 9.3744 3.8312 3.1618 16 6 9.0774 6.3366 3.4334 17 6 7.1296 3.8186 1.4447 18 6 4.2494 0.0143 0.0005 19 6 3.6199 -1.1975 0.0006 20 6 2.2068 -1.2212 0.0005 21 6 1.5091 -2.4488 0.0070 22 1 0.5077 -2.4986 0.4084 23 6 2.1149 -3.6002 -0.5066 24 7 3.1765 -3.4982 -1.2657 25 14 1.4091 -5.2834 -0.1090 26 1 0.0108 -5.3629 -0.6029 27 1 2.2280 -6.3318 -0.7688 28 1 1.4276 -5.4934 1.3609 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 3.6056 3.2306 0.0006 33 1 5.7058 3.1986 -2.0252 34 1 7.1942 2.4200 -1.4359 35 1 5.7826 1.4270 -1.8706 36 1 4.5014 4.9203 -0.3587 37 1 5.2176 7.0582 0.6273 38 1 7.1653 7.1319 2.1303 39 1 10.1711 3.6860 2.4322 40 1 9.8051 3.9061 4.1603 41 1 8.6887 2.9847 3.1244 42 1 8.2685 6.7546 4.0325 43 1 9.9489 6.1695 4.0662 44 1 9.3356 7.0327 2.6353 45 1 7.6653 2.9090 1.6728 46 1 5.3282 0.0671 0.0014 47 1 4.1882 -2.1159 0.0010 48 1 3.5968 -4.2967 -1.6215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162632788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:01 Heat of formation + Delta-G solvation = 51.621566 kcal Electronic energy + Delta-G solvation = -26682.796705 eV Core-core repulsion = 23122.638126 eV Total energy + Delta-G solvation = -3560.158579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.96540 -40.31479 -38.15651 -36.55369 -35.50389 -33.44514 -32.72188 -31.60482 -30.67421 -30.05736 -28.84869 -28.55251 -26.25658 -25.70282 -24.37228 -23.11786 -22.58318 -22.08582 -20.47135 -19.07485 -18.66465 -17.79522 -17.10977 -16.73319 -16.48075 -16.31592 -15.92916 -15.59547 -15.46208 -15.23181 -15.05148 -14.64658 -14.40708 -14.26116 -13.94567 -13.71968 -13.46575 -13.42162 -13.34419 -13.16146 -13.14558 -12.97442 -12.92538 -12.79182 -12.71253 -12.58046 -12.29543 -12.20465 -12.18451 -11.58960 -11.48878 -11.15256 -10.68840 -10.38102 -9.99742 -9.86567 -9.67415 -8.61641 -8.34095 -8.18320 -6.06435 0.48165 0.70451 0.91652 1.16834 1.42631 1.52984 1.60461 2.25470 2.26849 2.63840 2.86005 3.00254 3.67276 3.79319 3.99117 4.12058 4.19571 4.29062 4.31737 4.39912 4.43021 4.50692 4.54338 4.60816 4.67336 4.70488 4.73791 4.79538 4.82943 4.89719 4.90208 4.92519 4.98310 5.02796 5.08010 5.11641 5.23747 5.29448 5.37028 5.40314 5.56764 5.62084 5.67974 5.79536 5.92696 5.96263 6.04554 6.38288 6.53595 6.57173 6.67680 6.89217 6.98784 7.18412 7.91314 8.44904 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002549 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.183559 B =10982.192162 C =11690.166202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.021 3.979 3 N -0.539 5.539 4 C 0.295 3.705 5 N -0.727 5.727 6 C 0.204 3.796 7 H 0.071 0.929 8 C -0.154 4.154 9 C -0.044 4.044 10 C -0.181 4.181 11 C -0.071 4.071 12 C -0.202 4.202 13 C 0.206 3.794 14 N -0.645 5.645 15 C 0.088 3.912 16 C 0.093 3.907 17 C -0.200 4.200 18 C -0.215 4.215 19 C -0.108 4.108 20 C -0.003 4.003 21 C -0.482 4.482 22 H 0.082 0.918 23 C 0.032 3.968 24 N -0.840 5.840 25 Si 0.979 3.021 26 H -0.259 1.259 27 H -0.273 1.273 28 H -0.263 1.263 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.730 15.502 6.569 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 N -0.256 5.256 4 C 0.060 3.940 5 N -0.366 5.366 6 C 0.098 3.902 7 H 0.089 0.911 8 C -0.212 4.212 9 C -0.045 4.045 10 C -0.201 4.201 11 C -0.090 4.090 12 C -0.224 4.224 13 C 0.104 3.896 14 N -0.357 5.357 15 C -0.055 4.055 16 C -0.049 4.049 17 C -0.222 4.222 18 C -0.239 4.239 19 C -0.134 4.134 20 C -0.008 4.008 21 C -0.513 4.513 22 H 0.100 0.900 23 C -0.181 4.181 24 N -0.468 5.468 25 Si 0.800 3.200 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.187 1.187 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.229 0.771 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.131 0.869 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.763 16.054 6.566 21.535 hybrid contribution 0.105 -1.498 -0.139 1.508 sum 12.868 14.556 6.426 20.464 Atomic orbital electron populations 1.20227 0.89069 1.01525 1.01233 1.21282 0.96440 0.87274 1.06731 1.66445 1.08106 1.31042 1.19978 1.17999 0.88004 0.86379 1.01589 1.43885 1.04236 1.03687 1.84750 1.19564 0.79857 0.94680 0.96083 0.91056 1.22189 1.01533 1.01648 0.95876 1.19634 0.94954 0.94213 0.95723 1.20805 1.02180 0.92609 1.04553 1.21109 0.95357 0.97826 0.94664 1.20863 0.99356 0.97302 1.04910 1.17903 0.87768 0.93694 0.90267 1.46548 1.29973 1.08997 1.50202 1.21784 0.96087 0.86134 1.01501 1.21735 1.00502 0.84511 0.98178 1.20570 1.00864 0.97368 1.03446 1.20983 0.99308 0.92381 1.11207 1.21301 0.95037 0.96548 1.00545 1.18502 0.92828 0.94095 0.95349 1.19519 1.02149 0.92698 1.36911 0.90007 1.26679 0.94698 1.04668 0.92055 1.69880 1.19764 1.32597 1.24573 0.85296 0.79194 0.76054 0.79419 1.18339 1.19747 1.18732 0.92040 0.92202 0.91527 0.77080 0.92195 0.90374 0.93791 0.86579 0.83986 0.84407 0.92898 0.89660 0.92098 0.92732 0.89015 0.92421 0.85633 0.86414 0.86866 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.74 9.57 71.24 0.68 -2.05 16 2 C 0.02 1.07 6.86 43.22 0.30 1.37 16 3 N -0.54 -27.13 10.29 -179.37 -1.85 -28.98 16 4 C 0.29 13.80 7.62 133.32 1.02 14.81 16 5 N -0.73 -27.42 5.17 -327.89 -1.69 -29.11 16 6 C 0.20 6.40 2.45 44.25 0.11 6.51 16 7 H 0.07 2.35 6.27 -2.39 -0.01 2.34 16 8 C -0.15 -4.49 9.36 71.98 0.67 -3.81 16 9 C -0.04 -1.21 4.95 -19.88 -0.10 -1.31 16 10 C -0.18 -4.63 9.05 22.29 0.20 -4.43 16 11 C -0.07 -1.52 10.04 22.25 0.22 -1.30 16 12 C -0.20 -4.14 9.31 22.40 0.21 -3.93 16 13 C 0.21 4.60 6.55 38.21 0.25 4.85 16 14 N -0.65 -11.23 3.41 -747.28 -2.55 -13.78 16 15 C 0.09 1.23 10.16 127.77 1.30 2.53 16 16 C 0.09 1.05 9.40 127.77 1.20 2.25 16 17 C -0.20 -5.03 8.83 22.40 0.20 -4.83 16 18 C -0.21 -10.34 8.73 22.23 0.19 -10.15 16 19 C -0.11 -5.79 8.74 22.64 0.20 -5.60 16 20 C 0.00 -0.15 5.58 -21.18 -0.12 -0.27 16 21 C -0.48 -25.86 8.14 23.39 0.19 -25.67 16 22 H 0.08 4.17 6.86 -2.91 -0.02 4.15 16 23 C 0.03 1.60 5.19 85.23 0.44 2.04 16 24 N -0.84 -44.53 10.93 21.82 0.24 -44.29 16 25 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 27 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 28 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.87 6.77 -2.39 -0.02 2.85 16 32 H 0.39 14.18 7.00 -92.71 -0.65 13.53 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.47 7.62 -2.39 -0.02 1.46 16 36 H 0.12 2.94 6.93 -2.91 -0.02 2.92 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.14 2.17 6.73 -2.91 -0.02 2.15 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.83 7.92 -2.39 -0.02 0.81 16 41 H 0.06 0.98 6.20 -2.38 -0.01 0.96 16 42 H 0.05 0.60 7.95 -2.39 -0.02 0.58 16 43 H 0.09 0.65 7.79 -2.39 -0.02 0.63 16 44 H 0.06 0.60 7.95 -2.39 -0.02 0.58 16 45 H 0.13 2.95 6.12 -2.91 -0.02 2.93 16 46 H 0.12 5.02 6.00 -2.91 -0.02 5.01 16 47 H 0.11 6.28 6.25 -2.91 -0.02 6.26 16 48 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -64.92 382.65 3.68 -61.24 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: 0.33 Total: 43.18 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 7.17 Total: -28.97 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -5.85 Total: -116.17 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -64.92 3.68 -61.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162632788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.863 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds