Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00209 * 2 1 4 4 C 1.38733 * 120.05809 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94309 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05475 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94296 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46957 * 90.00242 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.39670 * 120.00232 * 180.02562 * 10 9 8 12 12 C 1.38913 * 120.07391 * 359.72023 * 11 10 9 13 13 C 1.38106 * 119.92552 * 179.77075 * 12 11 10 14 14 C 1.38287 * 120.07114 * 0.50638 * 13 12 11 15 15 C 1.50698 * 119.92052 * 179.72149 * 14 13 12 16 16 C 1.50699 * 109.47323 * 270.02528 * 15 14 13 17 17 H 1.08000 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00298 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00139 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99650 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47157 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.46980 * 209.99959 * 20 18 16 23 23 H 1.48503 * 109.47243 * 330.00070 * 20 18 16 24 24 C 1.38278 * 120.15127 * 359.75219 * 14 13 12 25 25 C 1.38105 * 120.07843 * 359.97438 * 24 14 13 26 26 C 1.38269 * 120.11352 * 0.25440 * 6 5 4 27 27 C 1.38143 * 120.05612 * 359.45030 * 26 6 5 28 28 H 1.08996 * 109.47087 * 299.99635 * 1 2 3 29 29 H 1.08999 * 109.47080 * 59.99815 * 1 2 3 30 30 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.02397 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.96979 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.46700 * 329.99723 * 7 6 5 34 34 H 1.09000 * 109.46974 * 210.00097 * 7 6 5 35 35 H 1.08993 * 109.47839 * 60.00178 * 8 7 6 36 36 H 1.09000 * 109.47160 * 299.99740 * 8 7 6 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 39 39 H 0.97010 * 119.99910 * 359.97438 * 10 9 8 40 40 H 1.08002 * 120.03503 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.96459 * 180.25507 * 13 12 11 42 42 H 1.09000 * 109.47308 * 30.02521 * 15 14 13 43 43 H 1.09002 * 109.46942 * 150.02697 * 15 14 13 44 44 H 0.96999 * 119.99974 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.96238 * 180.02562 * 24 14 13 46 46 H 1.07994 * 120.03973 * 179.97438 * 25 24 14 47 47 H 1.08006 * 119.97013 * 179.70550 * 26 6 5 48 48 H 1.07993 * 120.03187 * 180.25209 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0186 0.0028 8 6 4.2180 5.4740 -1.4393 9 6 4.9132 6.8370 -1.4381 10 7 5.1359 7.2729 -2.8189 11 6 5.7604 8.4960 -3.0730 12 6 6.1658 9.3032 -2.0177 13 6 6.7874 10.5099 -2.2725 14 6 6.9968 10.9197 -3.5765 15 6 7.6697 12.2399 -3.8507 16 6 6.6282 13.3252 -3.9421 17 1 5.5834 13.0833 -3.8140 18 6 7.0089 14.6272 -4.1892 19 7 6.0999 15.5742 -4.2694 20 14 8.8160 15.0459 -4.4100 21 1 9.1793 14.9293 -5.8451 22 1 9.0620 16.4357 -3.9484 23 1 9.6431 14.1055 -3.6120 24 6 6.5897 10.1211 -4.6294 25 6 5.9727 8.9106 -4.3818 26 6 1.9211 3.6047 0.0069 27 6 1.2915 2.3751 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3800 0.0014 32 1 5.1346 2.5750 0.0011 33 1 4.9437 4.9379 0.5169 34 1 3.3578 5.7460 0.5169 35 1 3.2604 5.5547 -1.9535 36 1 4.8463 4.7466 -1.9535 37 1 4.2853 7.5646 -0.9238 38 1 5.8710 6.7558 -0.9241 39 1 4.8503 6.7115 -3.5567 40 1 5.9989 8.9855 -0.9990 41 1 7.1065 11.1360 -1.4524 42 1 8.3633 12.4692 -3.0416 43 1 8.2162 12.1807 -4.7919 44 1 6.3678 16.4902 -4.4429 45 1 6.7552 10.4440 -5.6467 46 1 5.6546 8.2876 -5.2045 47 1 1.3342 4.5114 0.0121 48 1 0.2130 2.3201 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164191801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = -4.009318 kcal Electronic energy + Delta-G solvation = -24806.375504 eV Core-core repulsion = 21211.511838 eV Total energy + Delta-G solvation = -3594.863666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.56085 -38.98206 -38.27110 -36.28637 -34.04148 -32.73860 -31.50574 -30.98715 -30.21953 -29.56144 -27.95143 -26.65684 -25.07521 -23.10586 -22.84544 -22.43835 -21.36604 -20.98255 -19.88872 -18.58318 -16.82666 -16.76184 -16.68019 -16.19184 -16.13611 -15.51434 -15.34228 -14.79213 -14.57283 -14.20273 -14.03973 -13.88921 -13.69486 -13.54117 -13.13114 -13.04884 -12.78677 -12.54642 -12.45851 -12.28659 -12.16451 -12.02454 -11.53490 -11.44239 -11.33410 -11.28819 -11.15511 -10.98881 -10.58130 -10.19963 -10.09077 -9.87970 -9.40378 -9.39417 -9.05444 -8.51379 -8.47546 -8.24527 -6.74232 -6.00394 -3.98197 0.94152 1.01030 2.11347 2.34662 2.83122 3.31442 3.33352 3.40786 3.44665 3.66978 4.33872 4.39421 4.46659 4.47891 4.58554 4.60935 4.66272 4.73703 4.93272 4.96548 4.99383 5.01989 5.05812 5.23216 5.31872 5.37178 5.40497 5.50134 5.56110 5.60947 5.63496 5.85855 5.89188 5.90869 5.96243 6.00422 6.12102 6.27277 6.28092 6.35985 6.41912 6.67274 6.83160 6.95580 7.10013 7.12658 7.22488 7.44850 7.77124 7.77427 7.85474 8.05703 8.59635 9.06555 9.60936 11.12832 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.001491 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.279646 B =18771.749717 C =18907.051851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.116 4.116 7 C -0.074 4.074 8 C -0.123 4.123 9 C 0.130 3.870 10 N -0.758 5.758 11 C 0.185 3.815 12 C -0.195 4.195 13 C -0.078 4.078 14 C -0.082 4.082 15 C 0.020 3.980 16 C -0.509 4.509 17 H 0.073 0.927 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.077 4.077 25 C -0.194 4.194 26 C -0.076 4.076 27 C -0.206 4.206 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.393 0.607 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.263 0.737 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 -31.496 9.837 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.161 4.161 9 C 0.005 3.995 10 N -0.391 5.391 11 C 0.085 3.915 12 C -0.217 4.217 13 C -0.096 4.096 14 C -0.083 4.083 15 C -0.017 4.017 16 C -0.547 4.547 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.542 5.542 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.096 4.096 25 C -0.216 4.216 26 C -0.094 4.094 27 C -0.225 4.225 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.127 0.873 47 H 0.143 0.857 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.576 -31.504 10.020 34.154 hybrid contribution 0.306 0.298 -0.448 0.619 sum -8.271 -31.206 9.572 33.673 Atomic orbital electron populations 1.23058 0.78326 1.03977 1.01419 1.86066 1.21446 1.27045 1.88793 1.19062 0.92430 0.84149 0.96905 1.20435 0.91365 0.98727 1.06326 1.20897 0.99928 0.90966 0.97684 1.19802 0.93524 0.95262 1.03015 1.20458 1.00777 0.93186 0.96738 1.21741 1.01250 0.96376 0.96764 1.21205 0.99268 0.94656 0.84394 1.44408 1.68142 1.20311 1.06254 1.17628 0.94222 0.86124 0.93542 1.20506 1.07377 0.96858 0.96946 1.20814 0.97440 0.94597 0.96773 1.20043 0.99436 0.96567 0.92301 1.18700 0.96057 0.90396 0.96582 1.21034 0.94468 0.90642 1.48606 0.90911 1.25014 0.97285 0.96296 0.94800 1.69907 1.33225 1.01086 1.50004 0.86809 0.86200 0.77654 0.78866 1.20260 1.21372 1.18922 1.20794 0.96904 0.92858 0.99023 1.20458 1.07980 0.99103 0.94048 1.20881 0.94052 0.97090 0.97398 1.21238 1.00034 0.92375 1.08804 0.92621 0.92597 0.88220 0.85251 0.85248 0.90616 0.90641 0.91323 0.91313 0.92653 0.92725 0.77332 0.87213 0.86577 0.95792 0.96236 0.92751 0.86536 0.87316 0.85666 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.63 10.50 -19.44 -0.20 -2.83 16 3 C 0.12 1.02 6.69 -39.21 -0.26 0.76 16 4 C -0.15 -1.21 9.99 -39.43 -0.39 -1.61 16 5 C -0.08 -0.57 9.69 -39.61 -0.38 -0.96 16 6 C -0.12 -0.88 5.13 -104.60 -0.54 -1.41 16 7 C -0.07 -0.49 5.34 -27.88 -0.15 -0.64 16 8 C -0.12 -0.93 5.31 -26.73 -0.14 -1.07 16 9 C 0.13 1.28 4.91 -4.04 -0.02 1.26 16 10 N -0.76 -9.31 5.73 -58.63 -0.34 -9.65 16 11 C 0.18 2.97 6.65 -83.79 -0.56 2.41 16 12 C -0.19 -3.32 9.31 -39.38 -0.37 -3.69 16 13 C -0.08 -1.53 9.69 -39.61 -0.38 -1.92 16 14 C -0.08 -1.78 5.07 -104.59 -0.53 -2.31 16 15 C 0.02 0.49 4.17 -29.04 -0.12 0.37 16 16 C -0.51 -14.81 9.65 -34.44 -0.33 -15.14 16 17 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 20 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.08 -1.52 9.69 -39.62 -0.38 -1.90 16 25 C -0.19 -3.29 9.90 -39.38 -0.39 -3.68 16 26 C -0.08 -0.57 9.69 -39.60 -0.38 -0.96 16 27 C -0.21 -1.56 9.04 -39.43 -0.36 -1.91 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 38 H 0.05 0.54 7.96 -51.93 -0.41 0.13 16 39 H 0.39 4.18 8.49 -40.82 -0.35 3.83 16 40 H 0.11 1.61 6.73 -52.49 -0.35 1.26 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 43 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 47 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.32 396.25 -10.91 -44.22 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.64 Total: 1.95 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -4.80 Total: -29.42 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.44 Total: -37.00 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: -0.20 Total: -2.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.32 -10.91 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164191801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.213 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds