Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 117.00209 * 2 1 4 4 C 1.38733 * 120.05809 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94309 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05475 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94296 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46957 * 90.00242 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.39670 * 120.00232 * 180.02562 * 10 9 8 12 12 C 1.38913 * 120.07391 * 359.72023 * 11 10 9 13 13 C 1.38106 * 119.92552 * 179.77075 * 12 11 10 14 14 C 1.38287 * 120.07114 * 0.50638 * 13 12 11 15 15 C 1.50698 * 119.92052 * 179.72149 * 14 13 12 16 16 C 1.50699 * 109.47323 * 270.02528 * 15 14 13 17 17 H 1.08000 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00298 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00139 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99650 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47157 * 89.99944 * 20 18 16 22 22 H 1.48497 * 109.46980 * 209.99959 * 20 18 16 23 23 H 1.48503 * 109.47243 * 330.00070 * 20 18 16 24 24 C 1.38278 * 120.15127 * 359.75219 * 14 13 12 25 25 C 1.38105 * 120.07843 * 359.97438 * 24 14 13 26 26 C 1.38269 * 120.11352 * 0.25440 * 6 5 4 27 27 C 1.38143 * 120.05612 * 359.45030 * 26 6 5 28 28 H 1.08996 * 109.47087 * 299.99635 * 1 2 3 29 29 H 1.08999 * 109.47080 * 59.99815 * 1 2 3 30 30 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.02397 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.96979 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.46700 * 329.99723 * 7 6 5 34 34 H 1.09000 * 109.46974 * 210.00097 * 7 6 5 35 35 H 1.08993 * 109.47839 * 60.00178 * 8 7 6 36 36 H 1.09000 * 109.47160 * 299.99740 * 8 7 6 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 39 39 H 0.97010 * 119.99910 * 359.97438 * 10 9 8 40 40 H 1.08002 * 120.03503 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.96459 * 180.25507 * 13 12 11 42 42 H 1.09000 * 109.47308 * 30.02521 * 15 14 13 43 43 H 1.09002 * 109.46942 * 150.02697 * 15 14 13 44 44 H 0.96999 * 119.99974 * 179.97438 * 19 18 16 45 45 H 1.08002 * 119.96238 * 180.02562 * 24 14 13 46 46 H 1.07994 * 120.03973 * 179.97438 * 25 24 14 47 47 H 1.08006 * 119.97013 * 179.70550 * 26 6 5 48 48 H 1.07993 * 120.03187 * 180.25209 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0186 0.0028 8 6 4.2180 5.4740 -1.4393 9 6 4.9132 6.8370 -1.4381 10 7 5.1359 7.2729 -2.8189 11 6 5.7604 8.4960 -3.0730 12 6 6.1658 9.3032 -2.0177 13 6 6.7874 10.5099 -2.2725 14 6 6.9968 10.9197 -3.5765 15 6 7.6697 12.2399 -3.8507 16 6 6.6282 13.3252 -3.9421 17 1 5.5834 13.0833 -3.8140 18 6 7.0089 14.6272 -4.1892 19 7 6.0999 15.5742 -4.2694 20 14 8.8160 15.0459 -4.4100 21 1 9.1793 14.9293 -5.8451 22 1 9.0620 16.4357 -3.9484 23 1 9.6431 14.1055 -3.6120 24 6 6.5897 10.1211 -4.6294 25 6 5.9727 8.9106 -4.3818 26 6 1.9211 3.6047 0.0069 27 6 1.2915 2.3751 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3800 0.0014 32 1 5.1346 2.5750 0.0011 33 1 4.9437 4.9379 0.5169 34 1 3.3578 5.7460 0.5169 35 1 3.2604 5.5547 -1.9535 36 1 4.8463 4.7466 -1.9535 37 1 4.2853 7.5646 -0.9238 38 1 5.8710 6.7558 -0.9241 39 1 4.8503 6.7115 -3.5567 40 1 5.9989 8.9855 -0.9990 41 1 7.1065 11.1360 -1.4524 42 1 8.3633 12.4692 -3.0416 43 1 8.2162 12.1807 -4.7919 44 1 6.3678 16.4902 -4.4429 45 1 6.7552 10.4440 -5.6467 46 1 5.6546 8.2876 -5.2045 47 1 1.3342 4.5114 0.0121 48 1 0.2130 2.3201 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164191801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = -21.862474 kcal Electronic energy + Delta-G solvation = -24807.149675 eV Core-core repulsion = 21211.511838 eV Total energy + Delta-G solvation = -3595.637837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08291 -40.30052 -38.84369 -37.33579 -35.33859 -34.37843 -32.44166 -32.00385 -31.64979 -30.56707 -28.63697 -27.88315 -26.04164 -24.22349 -23.91200 -23.54769 -22.39362 -21.65186 -21.38565 -19.09214 -18.92059 -18.04695 -17.28912 -17.02485 -16.64664 -16.56143 -16.19563 -16.09361 -15.78401 -15.27515 -14.91144 -14.84537 -14.68540 -14.44120 -14.41704 -14.12307 -14.05052 -13.88677 -13.46869 -13.37638 -13.09642 -12.97586 -12.77601 -12.69300 -12.39521 -12.06035 -11.91414 -11.82006 -11.78376 -11.69136 -11.58332 -11.53364 -11.45206 -10.75560 -10.52667 -9.94701 -9.67101 -9.02910 -8.27407 -8.03383 -6.30720 0.39831 0.44563 0.68599 0.89298 1.37836 1.39687 1.52323 2.38266 2.39085 2.58622 2.83157 3.07661 3.14761 3.79444 3.84810 3.96614 4.11738 4.12538 4.25374 4.28773 4.34360 4.36442 4.40008 4.46604 4.47678 4.49585 4.66169 4.72015 4.73404 4.77610 4.78527 4.80100 4.92381 5.03131 5.08944 5.13682 5.17138 5.24095 5.32859 5.36728 5.37273 5.41619 5.54288 5.62284 5.71036 5.73697 5.85745 6.07269 6.17679 6.32852 6.44963 6.59935 6.76155 6.98972 7.32692 8.90166 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.001491 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.279646 B =18771.749717 C =18907.051851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.103 3.897 4 C -0.166 4.166 5 C -0.081 4.081 6 C -0.123 4.123 7 C -0.069 4.069 8 C -0.111 4.111 9 C 0.125 3.875 10 N -0.747 5.747 11 C 0.197 3.803 12 C -0.197 4.197 13 C -0.089 4.089 14 C -0.125 4.125 15 C 0.028 3.972 16 C -0.518 4.518 17 H 0.025 0.975 18 C 0.006 3.994 19 N -0.952 5.952 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.247 1.247 24 C -0.089 4.089 25 C -0.196 4.196 26 C -0.085 4.085 27 C -0.212 4.212 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.404 0.596 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.266 0.734 45 H 0.115 0.885 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -33.545 10.277 35.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.058 3.942 4 C -0.184 4.184 5 C -0.099 4.099 6 C -0.123 4.123 7 C -0.107 4.107 8 C -0.149 4.149 9 C 0.001 3.999 10 N -0.378 5.378 11 C 0.095 3.905 12 C -0.220 4.220 13 C -0.107 4.107 14 C -0.127 4.127 15 C -0.009 4.009 16 C -0.556 4.556 17 H 0.043 0.957 18 C -0.191 4.191 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.170 1.170 24 C -0.107 4.107 25 C -0.218 4.218 26 C -0.103 4.103 27 C -0.231 4.231 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.239 0.761 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.133 0.867 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.987 -33.612 10.468 36.099 hybrid contribution -0.074 0.771 -0.534 0.941 sum -8.061 -32.841 9.934 35.245 Atomic orbital electron populations 1.23299 0.76672 1.05422 1.02095 1.86036 1.23293 1.27191 1.88863 1.19303 0.92882 0.84628 0.97354 1.20660 0.91628 0.99373 1.06762 1.21114 1.00794 0.90722 0.97252 1.19941 0.93675 0.95615 1.03054 1.20423 1.01259 0.92780 0.96197 1.21621 1.00908 0.94948 0.97424 1.21382 0.99832 0.95791 0.82849 1.44526 1.66495 1.18840 1.07968 1.17742 0.92795 0.87003 0.92986 1.20706 1.06715 0.95964 0.98591 1.20890 0.98090 0.95824 0.95940 1.19926 1.02477 0.96315 0.93972 1.18530 0.94959 0.90778 0.96671 1.21279 0.93513 0.92493 1.48324 0.95671 1.26004 1.02821 0.95962 0.94292 1.70068 1.36008 1.01713 1.51480 0.85635 0.79580 0.77746 0.79576 1.19016 1.20773 1.17033 1.20879 0.97477 0.93906 0.98487 1.20692 1.07214 0.98394 0.95507 1.21122 0.94387 0.97563 0.97206 1.21452 1.00912 0.92180 1.08544 0.91845 0.91964 0.86510 0.84787 0.83756 0.89778 0.90179 0.91404 0.90962 0.92800 0.92145 0.76064 0.84690 0.86809 0.95649 0.95781 0.92468 0.86722 0.84506 0.84460 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.37 10.50 -92.46 -0.97 -6.34 16 3 C 0.10 1.69 6.69 22.51 0.15 1.84 16 4 C -0.17 -2.55 9.99 22.37 0.22 -2.33 16 5 C -0.08 -1.08 9.69 22.25 0.22 -0.86 16 6 C -0.12 -1.61 5.13 -19.85 -0.10 -1.71 16 7 C -0.07 -0.73 5.34 29.85 0.16 -0.57 16 8 C -0.11 -1.33 5.31 30.60 0.16 -1.17 16 9 C 0.13 2.07 4.91 86.38 0.42 2.49 16 10 N -0.75 -15.92 5.73 -339.40 -1.95 -17.87 16 11 C 0.20 5.89 6.65 38.22 0.25 6.14 16 12 C -0.20 -6.41 9.31 22.40 0.21 -6.20 16 13 C -0.09 -3.50 9.69 22.25 0.22 -3.28 16 14 C -0.13 -5.53 5.07 -19.84 -0.10 -5.63 16 15 C 0.03 1.39 4.17 29.10 0.12 1.51 16 16 C -0.52 -31.23 9.65 25.60 0.25 -30.98 16 17 H 0.02 1.69 7.98 -2.91 -0.02 1.67 16 18 C 0.01 0.34 5.47 84.66 0.46 0.80 16 19 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 20 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 24 C -0.09 -3.49 9.69 22.25 0.22 -3.28 16 25 C -0.20 -6.30 9.90 22.40 0.22 -6.08 16 26 C -0.08 -1.13 9.69 22.25 0.22 -0.91 16 27 C -0.21 -2.95 9.04 22.37 0.20 -2.75 16 28 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 29 H 0.06 0.39 7.66 -2.39 -0.02 0.38 16 30 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.95 7.94 -2.39 -0.02 0.93 16 38 H 0.06 0.98 7.96 -2.39 -0.02 0.96 16 39 H 0.40 7.14 8.49 -92.70 -0.79 6.35 16 40 H 0.14 3.61 6.73 -2.91 -0.02 3.59 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.03 1.23 7.14 -2.39 -0.02 1.22 16 43 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 44 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 47 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 48 H 0.14 1.40 6.30 -2.91 -0.02 1.38 16 Total: -1.00 -74.08 396.25 3.98 -70.10 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.10 Total: 19.57 kcal Atomic # 6 Polarization: -56.31 SS G_CDS: 4.61 Total: -51.70 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.65 Total: -78.65 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.97 Total: -6.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -74.08 3.98 -70.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164191801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.240 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds