Wall clock time and date at job start Tue Mar 31 2020 15:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47338 * 239.99879 * 3 2 1 5 5 H 1.48500 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47084 * 119.99813 * 3 2 1 7 7 C 1.37873 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99351 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00335 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47336 * 183.24676 * 9 7 2 11 11 C 1.46903 * 111.00132 * 202.21466 * 10 9 7 12 12 C 1.50707 * 109.46464 * 66.04856 * 11 10 9 13 13 C 1.38671 * 120.41728 * 269.71621 * 12 11 10 14 14 C 1.38631 * 118.41663 * 179.78618 * 13 12 11 15 15 C 1.38224 * 119.16017 * 0.51389 * 14 13 12 16 16 N 1.31848 * 120.76403 * 359.72697 * 15 14 13 17 17 C 1.31882 * 121.73038 * 359.97438 * 16 15 14 18 18 C 1.46907 * 110.99571 * 78.26569 * 10 9 7 19 19 C 1.52992 * 109.46978 * 285.97358 * 18 10 9 20 20 H 1.08998 * 109.47453 * 63.93308 * 19 18 10 21 21 N 1.46907 * 109.47539 * 303.93034 * 19 18 10 22 22 C 1.53005 * 109.47232 * 183.93221 * 19 18 10 23 23 C 1.50693 * 109.47542 * 185.00244 * 22 19 18 24 24 C 1.38235 * 120.00277 * 89.99301 * 23 22 19 25 25 C 1.38236 * 120.00137 * 179.72618 * 24 23 22 26 26 C 1.38238 * 120.00141 * 0.26027 * 25 24 23 27 27 C 1.38230 * 119.99652 * 359.97438 * 26 25 24 28 28 C 1.38236 * 120.00207 * 0.02562 * 27 26 25 29 29 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47430 * 63.24782 * 9 7 2 31 31 H 1.09001 * 109.47537 * 303.24958 * 9 7 2 32 32 H 1.08995 * 109.46991 * 186.04611 * 11 10 9 33 33 H 1.08991 * 109.47254 * 306.04933 * 11 10 9 34 34 H 1.07995 * 120.79047 * 0.02825 * 13 12 11 35 35 H 1.08000 * 120.41284 * 180.22226 * 14 13 12 36 36 H 1.08002 * 119.61626 * 179.74594 * 15 14 13 37 37 H 1.07996 * 119.62018 * 179.97438 * 17 16 15 38 38 H 1.09007 * 109.46520 * 165.97651 * 18 10 9 39 39 H 1.08992 * 109.47226 * 45.97470 * 18 10 9 40 40 H 1.00904 * 110.99456 * 303.08268 * 21 19 18 41 41 H 1.00900 * 110.99456 * 67.03021 * 21 19 18 42 42 H 1.08999 * 109.47192 * 64.99709 * 22 19 18 43 43 H 1.08999 * 109.46733 * 305.00152 * 22 19 18 44 44 H 1.08003 * 119.99669 * 0.02562 * 24 23 22 45 45 H 1.08003 * 120.00035 * 180.28177 * 25 24 23 46 46 H 1.07998 * 119.99950 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.00146 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.00071 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2039 -3.6145 0.0796 11 6 1.6066 -4.8545 -0.4339 12 6 1.3440 -4.7113 -1.9110 13 6 0.1281 -4.2218 -2.3637 14 6 -0.0674 -4.1030 -3.7310 15 6 0.9449 -4.4838 -4.5917 16 7 2.0868 -4.9499 -4.1255 17 6 2.3099 -5.0710 -2.8314 18 6 2.6908 -3.7945 1.4539 19 6 3.6798 -2.6781 1.7949 20 1 3.1641 -1.7180 1.7777 21 7 4.7667 -2.6679 0.8065 22 6 4.2610 -2.9199 3.1894 23 6 5.1401 -1.7586 3.5756 24 6 4.6000 -0.6742 4.2414 25 6 5.4076 0.3886 4.6007 26 6 6.7544 0.3695 4.2894 27 6 7.2935 -0.7127 3.6194 28 6 6.4859 -1.7755 3.2601 29 1 -0.4850 0.8400 -0.0004 30 1 0.6693 -2.5827 -0.9173 31 1 0.5812 -2.5319 0.8597 32 1 2.2922 -5.6849 -0.2656 33 1 0.6678 -5.0475 0.0850 34 1 -0.6466 -3.9363 -1.6676 35 1 -1.0007 -3.7222 -4.1188 36 1 0.7990 -4.3982 -5.6584 37 1 3.2577 -5.4573 -2.4870 38 1 3.1893 -4.7602 1.5391 39 1 1.8490 -3.7578 2.1453 40 1 5.2284 -3.5643 0.7677 41 1 4.4252 -2.3973 -0.1035 42 1 4.8513 -3.8362 3.1832 43 1 3.4486 -3.0160 3.9098 44 1 3.5480 -0.6595 4.4852 45 1 4.9865 1.2338 5.1249 46 1 7.3854 1.1997 4.5705 47 1 8.3458 -0.7279 3.3765 48 1 6.9072 -2.6212 2.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205537840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:27 Heat of formation + Delta-G solvation = 64.117820 kcal Electronic energy + Delta-G solvation = -27649.853835 eV Core-core repulsion = 24090.237134 eV Total energy + Delta-G solvation = -3559.616701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -39.87571 -39.01880 -37.51218 -34.81860 -32.78476 -32.06909 -31.40921 -30.78693 -30.49072 -27.93181 -27.44122 -25.93632 -24.06851 -23.21019 -22.22294 -22.14523 -21.23542 -20.16437 -19.63568 -16.84871 -16.71188 -16.35261 -15.98758 -15.47199 -15.22191 -14.84937 -14.68927 -14.48229 -14.23533 -13.96160 -13.74208 -13.22612 -13.13122 -13.00059 -12.93261 -12.70027 -12.40515 -12.31875 -12.00136 -11.91888 -11.59914 -11.31995 -11.08816 -10.96471 -10.75386 -10.65466 -10.59554 -10.44143 -10.28836 -9.63497 -9.42225 -9.26976 -9.07544 -8.63702 -8.54071 -8.41439 -8.25271 -7.88403 -7.41495 -6.06524 -4.05309 1.46538 1.66300 1.75443 1.79868 3.35518 3.37737 3.44846 4.08921 4.18058 4.42651 4.74940 4.86008 5.11470 5.14169 5.17811 5.25059 5.28952 5.31502 5.34593 5.38582 5.41968 5.46227 5.62261 5.72854 5.78132 5.85944 5.88035 5.99920 6.01022 6.05125 6.11264 6.12160 6.19251 6.28216 6.41852 6.46704 6.48392 6.66105 6.82721 6.84695 6.97209 7.03031 7.09961 7.14368 7.22335 7.39437 7.76243 7.95903 8.00356 8.10884 8.29659 8.35169 8.42998 9.01780 9.57885 11.03587 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.003982 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.708398 B = 7029.532537 C = 8294.781568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.078 0.922 9 C 0.184 3.816 10 N -0.531 5.531 11 C 0.097 3.903 12 C -0.110 4.110 13 C -0.056 4.056 14 C -0.173 4.173 15 C 0.087 3.913 16 N -0.492 5.492 17 C 0.112 3.888 18 C 0.037 3.963 19 C 0.095 3.905 20 H 0.119 0.881 21 N -0.830 5.830 22 C -0.075 4.075 23 C -0.052 4.052 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.093 4.093 29 H 0.260 0.740 30 H 0.034 0.966 31 H -0.006 1.006 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.317 0.683 41 H 0.357 0.643 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -8.074 3.419 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.095 0.905 9 C 0.060 3.940 10 N -0.256 5.256 11 C -0.031 4.031 12 C -0.113 4.113 13 C -0.083 4.083 14 C -0.193 4.193 15 C -0.070 4.070 16 N -0.200 5.200 17 C -0.045 4.045 18 C -0.093 4.093 19 C -0.018 4.018 20 H 0.137 0.863 21 N -0.360 5.360 22 C -0.113 4.113 23 C -0.052 4.052 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.012 0.988 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.127 0.873 41 H 0.173 0.827 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.885 -7.497 2.981 10.606 hybrid contribution -1.741 0.515 0.550 1.897 sum 5.144 -6.982 3.531 9.364 Atomic orbital electron populations 1.69938 1.06051 1.26811 1.51017 1.24932 0.94741 0.99142 0.95446 0.86680 0.79528 0.82995 0.79127 1.20225 1.21651 1.19766 1.21312 0.94071 0.89450 1.49614 0.90457 1.19962 0.90000 0.87516 0.96555 1.62147 1.40096 1.03696 1.19628 1.20893 0.98035 0.94070 0.90148 1.20731 0.94466 0.99129 0.96952 1.21549 0.97089 0.93961 0.95679 1.22055 1.00982 1.02009 0.94248 1.22595 0.89085 0.95402 0.99958 1.67623 1.22035 1.14046 1.16339 1.22476 0.98085 0.96113 0.87863 1.22770 0.98365 0.98410 0.89798 1.21667 0.90054 1.00863 0.89174 0.86332 1.59097 1.30195 1.33472 1.13217 1.20690 0.97726 0.95335 0.97579 1.19696 0.93985 0.95688 0.95826 1.21070 0.99556 0.93843 0.99122 1.21039 0.94020 0.98324 1.00849 1.20998 0.95362 0.98370 1.00524 1.21051 0.99422 0.94529 0.99538 1.20898 0.93275 0.98545 0.98352 0.93006 0.94778 0.98836 0.91116 0.94901 0.85043 0.85280 0.83446 0.83327 0.93181 0.95466 0.87284 0.82658 0.91994 0.91460 0.86424 0.86801 0.86984 0.86853 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -12.98 7.02 -34.45 -0.24 -13.22 16 8 H 0.08 1.95 4.43 -52.48 -0.23 1.72 16 9 C 0.18 4.31 4.62 -4.98 -0.02 4.28 16 10 N -0.53 -9.82 3.77 -237.52 -0.90 -10.71 16 11 C 0.10 1.55 5.13 -4.97 -0.03 1.52 16 12 C -0.11 -1.82 4.96 -104.48 -0.52 -2.34 16 13 C -0.06 -0.94 8.04 -39.28 -0.32 -1.25 16 14 C -0.17 -2.60 10.11 -39.44 -0.40 -3.00 16 15 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 16 N -0.49 -8.13 10.36 -13.26 -0.14 -8.27 16 17 C 0.11 1.79 10.86 -17.55 -0.19 1.60 16 18 C 0.04 0.61 4.62 -3.82 -0.02 0.60 16 19 C 0.09 1.62 2.11 -67.71 -0.14 1.47 16 20 H 0.12 2.58 5.45 -51.93 -0.28 2.29 16 21 N -0.83 -13.72 8.38 -4.67 -0.04 -13.76 16 22 C -0.07 -1.09 5.02 -27.88 -0.14 -1.23 16 23 C -0.05 -0.81 4.95 -104.63 -0.52 -1.33 16 24 C -0.12 -1.88 9.70 -39.58 -0.38 -2.27 16 25 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 26 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 27 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 28 C -0.09 -1.35 9.30 -39.58 -0.37 -1.72 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.85 4.91 -51.93 -0.25 0.59 16 31 H -0.01 -0.16 7.70 -51.93 -0.40 -0.56 16 32 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 33 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.13 2.21 7.61 -52.49 -0.40 1.81 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.05 0.72 7.77 -51.92 -0.40 0.32 16 39 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 40 H 0.32 4.52 8.99 -39.29 -0.35 4.17 16 41 H 0.36 6.77 6.75 -39.29 -0.27 6.51 16 42 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 46 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -29.08 386.05 -11.49 -40.56 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.18 Total: 15.51 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -4.77 Total: -20.96 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.34 Total: -57.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.08 -11.49 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205537840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.683 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds