Wall clock time and date at job start Tue Mar 31 2020 15:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47338 * 239.99879 * 3 2 1 5 5 H 1.48500 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47084 * 119.99813 * 3 2 1 7 7 C 1.37873 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99351 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00335 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47336 * 183.24676 * 9 7 2 11 11 C 1.46903 * 111.00132 * 202.21466 * 10 9 7 12 12 C 1.50707 * 109.46464 * 66.04856 * 11 10 9 13 13 C 1.38671 * 120.41728 * 269.71621 * 12 11 10 14 14 C 1.38631 * 118.41663 * 179.78618 * 13 12 11 15 15 C 1.38224 * 119.16017 * 0.51389 * 14 13 12 16 16 N 1.31848 * 120.76403 * 359.72697 * 15 14 13 17 17 C 1.31882 * 121.73038 * 359.97438 * 16 15 14 18 18 C 1.46907 * 110.99571 * 78.26569 * 10 9 7 19 19 C 1.52992 * 109.46978 * 285.97358 * 18 10 9 20 20 H 1.08998 * 109.47453 * 63.93308 * 19 18 10 21 21 N 1.46907 * 109.47539 * 303.93034 * 19 18 10 22 22 C 1.53005 * 109.47232 * 183.93221 * 19 18 10 23 23 C 1.50693 * 109.47542 * 185.00244 * 22 19 18 24 24 C 1.38235 * 120.00277 * 89.99301 * 23 22 19 25 25 C 1.38236 * 120.00137 * 179.72618 * 24 23 22 26 26 C 1.38238 * 120.00141 * 0.26027 * 25 24 23 27 27 C 1.38230 * 119.99652 * 359.97438 * 26 25 24 28 28 C 1.38236 * 120.00207 * 0.02562 * 27 26 25 29 29 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47430 * 63.24782 * 9 7 2 31 31 H 1.09001 * 109.47537 * 303.24958 * 9 7 2 32 32 H 1.08995 * 109.46991 * 186.04611 * 11 10 9 33 33 H 1.08991 * 109.47254 * 306.04933 * 11 10 9 34 34 H 1.07995 * 120.79047 * 0.02825 * 13 12 11 35 35 H 1.08000 * 120.41284 * 180.22226 * 14 13 12 36 36 H 1.08002 * 119.61626 * 179.74594 * 15 14 13 37 37 H 1.07996 * 119.62018 * 179.97438 * 17 16 15 38 38 H 1.09007 * 109.46520 * 165.97651 * 18 10 9 39 39 H 1.08992 * 109.47226 * 45.97470 * 18 10 9 40 40 H 1.00904 * 110.99456 * 303.08268 * 21 19 18 41 41 H 1.00900 * 110.99456 * 67.03021 * 21 19 18 42 42 H 1.08999 * 109.47192 * 64.99709 * 22 19 18 43 43 H 1.08999 * 109.46733 * 305.00152 * 22 19 18 44 44 H 1.08003 * 119.99669 * 0.02562 * 24 23 22 45 45 H 1.08003 * 120.00035 * 180.28177 * 25 24 23 46 46 H 1.07998 * 119.99950 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.00146 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.00071 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2039 -3.6145 0.0796 11 6 1.6066 -4.8545 -0.4339 12 6 1.3440 -4.7113 -1.9110 13 6 0.1281 -4.2218 -2.3637 14 6 -0.0674 -4.1030 -3.7310 15 6 0.9449 -4.4838 -4.5917 16 7 2.0868 -4.9499 -4.1255 17 6 2.3099 -5.0710 -2.8314 18 6 2.6908 -3.7945 1.4539 19 6 3.6798 -2.6781 1.7949 20 1 3.1641 -1.7180 1.7777 21 7 4.7667 -2.6679 0.8065 22 6 4.2610 -2.9199 3.1894 23 6 5.1401 -1.7586 3.5756 24 6 4.6000 -0.6742 4.2414 25 6 5.4076 0.3886 4.6007 26 6 6.7544 0.3695 4.2894 27 6 7.2935 -0.7127 3.6194 28 6 6.4859 -1.7755 3.2601 29 1 -0.4850 0.8400 -0.0004 30 1 0.6693 -2.5827 -0.9173 31 1 0.5812 -2.5319 0.8597 32 1 2.2922 -5.6849 -0.2656 33 1 0.6678 -5.0475 0.0850 34 1 -0.6466 -3.9363 -1.6676 35 1 -1.0007 -3.7222 -4.1188 36 1 0.7990 -4.3982 -5.6584 37 1 3.2577 -5.4573 -2.4870 38 1 3.1893 -4.7602 1.5391 39 1 1.8490 -3.7578 2.1453 40 1 5.2284 -3.5643 0.7677 41 1 4.4252 -2.3973 -0.1035 42 1 4.8513 -3.8362 3.1832 43 1 3.4486 -3.0160 3.9098 44 1 3.5480 -0.6595 4.4852 45 1 4.9865 1.2338 5.1249 46 1 7.3854 1.1997 4.5705 47 1 8.3458 -0.7279 3.3765 48 1 6.9072 -2.6212 2.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205537840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:20 Heat of formation + Delta-G solvation = 47.422852 kcal Electronic energy + Delta-G solvation = -27650.577783 eV Core-core repulsion = 24090.237134 eV Total energy + Delta-G solvation = -3560.340649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 6.29 seconds Orbital eigenvalues (eV) -41.11364 -40.17013 -38.92094 -36.13489 -34.73010 -33.37230 -32.62249 -32.06276 -31.60449 -29.61669 -28.86561 -27.19316 -25.70116 -24.44165 -23.71223 -23.29886 -22.43798 -21.52644 -21.04681 -18.64907 -17.92205 -17.55650 -17.29364 -16.90834 -16.60742 -16.26854 -16.09575 -15.85576 -15.54563 -15.44959 -15.04077 -14.54067 -14.47830 -14.15691 -14.11606 -13.98796 -13.88543 -13.74194 -13.52755 -13.27096 -13.01330 -12.87582 -12.57819 -12.50186 -12.37405 -12.23000 -12.00738 -11.70412 -11.61300 -11.33225 -11.17641 -10.67900 -10.43464 -10.36031 -9.85617 -9.67184 -9.41146 -9.28443 -8.92873 -8.14840 -6.16321 0.25961 0.40923 0.62546 0.67249 1.38141 1.39125 1.46722 2.40493 2.86177 3.03741 3.19292 3.43972 3.63661 3.91021 3.92330 4.00496 4.04482 4.15070 4.16670 4.19178 4.27460 4.33735 4.41821 4.51009 4.58278 4.63224 4.70799 4.74316 4.80772 4.84436 4.87028 4.90395 4.94639 5.05755 5.20667 5.26207 5.28801 5.30467 5.38047 5.44706 5.57995 5.71995 5.74499 5.78883 5.85601 5.94872 6.14634 6.29064 6.37020 6.58986 6.64736 7.00380 7.04478 7.08865 7.49221 8.95162 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.003982 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.708398 B = 7029.532537 C = 8294.781568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.202 3.798 10 N -0.527 5.527 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.077 4.077 14 C -0.176 4.176 15 C 0.085 3.915 16 N -0.508 5.508 17 C 0.108 3.892 18 C 0.038 3.962 19 C 0.104 3.896 20 H 0.069 0.931 21 N -0.825 5.825 22 C -0.067 4.067 23 C -0.067 4.067 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.100 4.100 29 H 0.258 0.742 30 H 0.020 0.980 31 H -0.042 1.042 32 H 0.104 0.896 33 H 0.028 0.972 34 H 0.118 0.882 35 H 0.151 0.849 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.012 0.988 40 H 0.334 0.666 41 H 0.343 0.657 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -9.123 2.932 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.189 4.189 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.100 0.900 9 C 0.075 3.925 10 N -0.251 5.251 11 C -0.030 4.030 12 C -0.125 4.125 13 C -0.104 4.104 14 C -0.196 4.196 15 C -0.072 4.072 16 N -0.217 5.217 17 C -0.049 4.049 18 C -0.091 4.091 19 C -0.008 4.008 20 H 0.087 0.913 21 N -0.355 5.355 22 C -0.105 4.105 23 C -0.067 4.067 24 C -0.163 4.163 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.149 4.149 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.038 0.962 31 H -0.024 1.024 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.169 0.831 36 H 0.197 0.803 37 H 0.186 0.814 38 H 0.105 0.895 39 H 0.030 0.970 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.127 0.873 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.158 0.842 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.315 -8.568 2.506 12.902 hybrid contribution -2.461 0.789 0.698 2.677 sum 6.854 -7.779 3.204 10.852 Atomic orbital electron populations 1.70048 1.07211 1.27073 1.53156 1.25585 0.95320 1.01905 0.96063 0.85857 0.78357 0.80207 0.78773 1.20022 1.21638 1.19984 1.21675 0.94431 0.90330 1.47154 0.90015 1.19579 0.89878 0.88811 0.94188 1.62046 1.38524 1.03704 1.20845 1.20987 0.98578 0.93568 0.89827 1.20813 0.94651 0.99791 0.97273 1.21663 0.97323 0.94880 0.96549 1.22339 1.02118 1.01540 0.93604 1.23133 0.88379 0.94196 1.01501 1.67687 1.22791 1.14632 1.16573 1.22785 0.98618 0.95797 0.87726 1.22823 0.97930 1.00059 0.88329 1.21374 0.90129 0.98414 0.90900 0.91305 1.59033 1.29723 1.34721 1.12036 1.20608 0.97937 0.96234 0.95711 1.19850 0.94776 0.95812 0.96279 1.21232 0.99581 0.95005 1.00473 1.21309 0.94765 0.98487 1.01145 1.21353 0.95171 0.99264 0.99964 1.21434 1.00756 0.94017 0.98701 1.21139 0.92894 0.99404 0.98318 0.93342 0.96242 1.02414 0.87780 0.95398 0.86364 0.83145 0.80311 0.81358 0.89547 0.97010 0.85359 0.84224 0.89454 0.91456 0.87315 0.85615 0.84508 0.84211 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.94 45.37 29.54 68.60 2.03 47.39 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.50 -26.07 7.02 25.60 0.18 -25.89 16 8 H 0.08 4.16 4.43 -2.91 -0.01 4.15 16 9 C 0.20 9.69 4.62 85.55 0.40 10.09 16 10 N -0.53 -19.25 3.77 -905.38 -3.42 -22.67 16 11 C 0.10 3.03 5.13 85.56 0.44 3.46 16 12 C -0.12 -3.96 4.96 -19.77 -0.10 -4.05 16 13 C -0.08 -2.60 8.04 22.47 0.18 -2.42 16 14 C -0.18 -5.14 10.11 22.36 0.23 -4.92 16 15 C 0.08 2.37 11.18 84.69 0.95 3.31 16 16 N -0.51 -15.88 10.36 -195.85 -2.03 -17.91 16 17 C 0.11 3.26 10.86 84.67 0.92 4.18 16 18 C 0.04 1.24 4.62 86.30 0.40 1.64 16 19 C 0.10 3.51 2.11 44.91 0.09 3.60 16 20 H 0.07 3.06 5.45 -2.39 -0.01 3.04 16 21 N -0.83 -25.89 8.38 -168.67 -1.41 -27.30 16 22 C -0.07 -1.86 5.02 29.85 0.15 -1.71 16 23 C -0.07 -2.03 4.95 -19.87 -0.10 -2.13 16 24 C -0.14 -4.66 9.70 22.27 0.22 -4.45 16 25 C -0.14 -4.06 10.05 22.27 0.22 -3.83 16 26 C -0.14 -3.62 10.05 22.27 0.22 -3.39 16 27 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 28 C -0.10 -2.69 9.30 22.27 0.21 -2.49 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.02 1.01 4.91 -2.39 -0.01 0.99 16 31 H -0.04 -2.29 7.70 -2.39 -0.02 -2.31 16 32 H 0.10 2.51 7.79 -2.39 -0.02 2.49 16 33 H 0.03 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.12 4.18 7.61 -2.91 -0.02 4.16 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.09 2.20 7.77 -2.38 -0.02 2.18 16 39 H 0.01 0.42 7.74 -2.39 -0.02 0.40 16 40 H 0.33 8.52 8.99 -89.69 -0.81 7.71 16 41 H 0.34 12.60 6.75 -89.69 -0.60 12.00 16 42 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 43 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 44 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 48 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -64.37 386.05 0.30 -64.07 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: -0.44 Total: 42.06 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.29 Total: -31.12 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.57 Total: -122.41 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.37 0.30 -64.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205537840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.494 kcal (2) G-P(sol) polarization free energy of solvation -64.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds