Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35906 * 116.99831 * 2 1 4 4 C 1.38748 * 120.05424 * 359.72261 * 3 2 1 5 5 C 1.38133 * 119.93932 * 179.70405 * 4 3 2 6 6 C 1.38281 * 120.05337 * 0.58924 * 5 4 3 7 7 C 1.38245 * 120.11714 * 359.68573 * 6 5 4 8 8 C 1.50693 * 119.97632 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47069 * 270.02354 * 8 7 6 10 10 C 1.52996 * 109.47254 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.47567 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99388 * 270.00125 * 11 10 9 13 13 H 1.07998 * 120.00692 * 5.76918 * 12 11 10 14 14 C 1.38820 * 119.99477 * 185.77135 * 12 11 10 15 15 N 1.31615 * 119.99772 * 355.02783 * 14 12 11 16 16 Si 1.86799 * 119.99849 * 175.02549 * 14 12 11 17 17 H 1.48500 * 109.47057 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47032 * 120.00471 * 16 14 12 19 19 H 1.48499 * 109.47167 * 240.00007 * 16 14 12 20 20 C 1.46501 * 119.99906 * 89.99164 * 11 10 9 21 21 C 1.50701 * 109.46706 * 85.46006 * 20 11 10 22 22 C 1.38228 * 120.00496 * 274.99592 * 21 20 11 23 23 C 1.38230 * 120.00225 * 179.76721 * 22 21 20 24 24 C 1.38230 * 120.00141 * 0.50874 * 23 22 21 25 25 C 1.38238 * 119.99830 * 359.74581 * 24 23 22 26 26 C 1.38236 * 120.00085 * 359.97438 * 25 24 23 27 27 C 1.38170 * 120.04968 * 0.02562 * 7 6 5 28 28 H 1.08995 * 109.47208 * 300.00566 * 1 2 3 29 29 H 1.09002 * 109.46727 * 60.00531 * 1 2 3 30 30 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.03420 * 359.97304 * 4 3 2 32 32 H 1.08003 * 119.96979 * 180.29859 * 5 4 3 33 33 H 1.08004 * 119.94081 * 179.70435 * 6 5 4 34 34 H 1.08996 * 109.47393 * 30.01641 * 8 7 6 35 35 H 1.09000 * 109.47467 * 150.02199 * 8 7 6 36 36 H 1.08998 * 109.46594 * 299.99357 * 9 8 7 37 37 H 1.08994 * 109.47428 * 59.99842 * 9 8 7 38 38 H 1.09000 * 109.47098 * 299.99767 * 10 9 8 39 39 H 1.09006 * 109.47426 * 59.99252 * 10 9 8 40 40 H 0.97008 * 119.99735 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.46723 * 205.45988 * 20 11 10 42 42 H 1.08998 * 109.47234 * 325.46553 * 20 11 10 43 43 H 1.08005 * 119.99679 * 359.97438 * 22 21 20 44 44 H 1.08002 * 119.99862 * 180.22687 * 23 22 21 45 45 H 1.07999 * 120.00341 * 179.72450 * 24 23 22 46 46 H 1.08004 * 120.00132 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.00140 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.02117 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9209 3.6048 0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5172 0.0001 8 6 5.5608 2.5982 -0.0008 9 6 6.0692 2.6256 -1.4437 10 6 7.5969 2.7072 -1.4447 11 7 8.0838 2.7329 -2.8262 12 6 8.3746 1.5606 -3.4714 13 1 8.1577 0.6149 -2.9971 14 6 8.9482 1.5878 -4.7353 15 7 9.1225 2.7362 -5.3542 16 14 9.4725 -0.0054 -5.5575 17 1 9.1698 -1.1488 -4.6595 18 1 8.7329 -0.1702 -6.8345 19 1 10.9313 0.0361 -5.8323 20 6 8.2594 4.0126 -3.5174 21 6 9.6179 4.5774 -3.1911 22 6 9.7982 5.3244 -2.0421 23 6 11.0455 5.8384 -1.7405 24 6 12.1101 5.6142 -2.5932 25 6 11.9287 4.8716 -3.7449 26 6 10.6827 4.3527 -4.0437 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2129 2.3204 -0.0108 32 1 1.3340 4.5114 0.0007 33 1 3.7922 4.6381 0.0001 34 1 5.8761 3.5065 0.5126 35 1 5.9718 1.7291 0.5128 36 1 5.7540 1.7173 -1.9572 37 1 5.6582 3.4947 -1.9573 38 1 7.9126 3.6153 -0.9310 39 1 8.0077 1.8379 -0.9311 40 1 9.5237 2.7553 -6.2372 41 1 8.1788 3.8584 -4.5934 42 1 7.4881 4.7104 -3.1915 43 1 8.9653 5.5037 -1.3784 44 1 11.1871 6.4189 -0.8408 45 1 13.0836 6.0195 -2.3597 46 1 12.7604 4.6968 -4.4114 47 1 10.5408 3.7730 -4.9437 48 1 4.0207 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207573130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = 43.110892 kcal Electronic energy + Delta-G solvation = -26651.547486 eV Core-core repulsion = 23058.727106 eV Total energy + Delta-G solvation = -3592.820380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.16050 -38.28160 -37.79828 -36.00789 -33.87253 -31.61901 -30.75990 -30.43114 -29.71153 -28.98538 -27.42175 -25.52233 -25.45382 -22.79246 -22.44049 -21.53188 -20.96348 -20.46721 -19.54663 -17.75490 -17.10017 -16.31510 -15.98329 -15.84346 -15.62583 -15.11791 -14.59777 -14.27726 -13.99407 -13.85719 -13.59572 -13.50944 -13.36305 -12.99437 -12.81739 -12.49714 -12.33922 -12.10032 -11.90672 -11.65173 -11.50557 -11.37311 -11.15452 -10.96526 -10.90228 -10.82999 -10.70043 -10.25387 -10.21295 -10.14607 -9.98088 -9.75951 -9.38497 -8.79396 -8.65487 -8.19302 -7.89349 -7.57800 -6.84017 -5.50215 -3.22999 1.35115 1.47324 2.39904 2.50851 3.17520 3.36386 3.43797 3.44546 3.78197 4.43131 4.71946 4.80623 4.86813 4.93797 4.95532 5.08641 5.25003 5.28496 5.32408 5.38706 5.52046 5.56395 5.69646 5.73204 5.84276 5.89728 5.95772 6.03069 6.10989 6.18988 6.28432 6.31355 6.38428 6.45991 6.52696 6.59586 6.66656 6.72823 6.78104 6.90662 6.91351 7.05297 7.17011 7.24029 7.35587 7.44367 7.58142 7.75535 7.91996 8.08145 8.27298 8.64271 9.30629 9.84958 10.20906 11.19116 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.002962 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.369963 B = 9451.106584 C =11127.792115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.220 4.220 5 C -0.081 4.081 6 C -0.155 4.155 7 C -0.028 4.028 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.147 3.853 11 N -0.591 5.591 12 C -0.202 4.202 13 H 0.077 0.923 14 C -0.026 4.026 15 N -0.908 5.908 16 Si 0.917 3.083 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.140 3.860 21 C -0.055 4.055 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.096 4.096 27 C -0.150 4.150 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.176 0.824 42 H 0.003 0.997 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.176 0.824 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 1.615 9.492 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.239 4.239 5 C -0.099 4.099 6 C -0.173 4.173 7 C -0.029 4.029 8 C -0.120 4.120 9 C -0.169 4.169 10 C 0.020 3.980 11 N -0.309 5.309 12 C -0.331 4.331 13 H 0.095 0.905 14 C -0.217 4.217 15 N -0.562 5.562 16 Si 0.749 3.251 17 H -0.207 1.207 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.016 3.984 21 C -0.058 4.058 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.166 4.166 25 C -0.168 4.168 26 C -0.114 4.114 27 C -0.168 4.168 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.191 0.809 42 H 0.021 0.979 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.192 0.808 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.459 1.346 9.342 14.845 hybrid contribution 0.127 -0.492 -0.035 0.509 sum -11.332 0.854 9.307 14.689 Atomic orbital electron populations 1.23014 0.78725 1.03704 1.01194 1.86077 1.21121 1.27189 1.88878 1.19012 0.92334 0.83987 0.96617 1.21135 0.99647 0.92519 1.10578 1.20887 0.94640 0.96780 0.97562 1.20990 0.93596 0.98267 1.04461 1.19850 0.96413 0.91902 0.94708 1.20695 0.89443 1.02576 0.99306 1.22218 0.99232 1.02314 0.93152 1.20826 0.91061 0.99040 0.87111 1.44196 1.74606 1.03055 1.09042 1.19642 1.29696 0.85752 0.98006 0.90524 1.24677 1.01914 0.97241 0.97831 1.69040 1.51137 1.21440 1.14631 0.85919 0.78115 0.82067 0.79047 1.20728 1.21829 1.21673 1.21599 0.87352 0.83172 1.06289 1.20973 0.99822 0.92872 0.92133 1.21121 0.96159 1.00151 0.97965 1.20831 0.93881 1.02376 0.99326 1.20872 0.97687 1.01644 0.96441 1.21295 0.98215 0.99995 0.97274 1.22939 0.90321 0.95527 1.02632 1.20344 0.91133 0.98522 1.06819 0.92856 0.92739 0.88424 0.85930 0.86058 0.85911 0.91121 0.91087 0.91914 0.92506 0.94215 0.93878 0.93588 0.80932 0.97874 0.88158 0.88183 0.88269 0.88052 0.80806 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.00 10.50 -19.45 -0.20 -4.20 16 3 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 4 C -0.22 -2.56 9.04 -39.43 -0.36 -2.92 16 5 C -0.08 -0.93 10.04 -39.60 -0.40 -1.32 16 6 C -0.15 -1.97 9.70 -39.56 -0.38 -2.36 16 7 C -0.03 -0.39 5.13 -104.65 -0.54 -0.93 16 8 C -0.08 -1.15 5.34 -27.88 -0.15 -1.29 16 9 C -0.13 -2.23 5.52 -26.73 -0.15 -2.38 16 10 C 0.15 2.89 5.69 -4.04 -0.02 2.87 16 11 N -0.59 -13.96 2.52 -174.61 -0.44 -14.40 16 12 C -0.20 -5.18 9.82 -15.06 -0.15 -5.32 16 13 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.03 -0.67 5.45 -17.43 -0.09 -0.76 16 15 N -0.91 -23.19 5.73 55.49 0.32 -22.87 16 16 Si 0.92 20.99 29.56 -169.99 -5.02 15.97 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.14 3.31 5.29 -5.19 -0.03 3.28 16 21 C -0.06 -1.26 5.46 -104.62 -0.57 -1.84 16 22 C -0.14 -2.77 9.35 -39.59 -0.37 -3.14 16 23 C -0.15 -2.76 10.05 -39.59 -0.40 -3.15 16 24 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 25 C -0.15 -3.06 10.05 -39.58 -0.40 -3.46 16 26 C -0.10 -2.21 9.21 -39.58 -0.36 -2.58 16 27 C -0.15 -2.12 9.64 -39.43 -0.38 -2.50 16 28 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 29 H 0.05 0.39 7.65 -51.93 -0.40 0.00 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 32 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.75 7.05 -51.93 -0.37 0.39 16 39 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 40 H 0.25 6.23 8.08 -40.82 -0.33 5.90 16 41 H 0.18 4.52 4.56 -82.03 -0.37 4.14 16 42 H 0.00 0.07 8.08 -51.93 -0.42 -0.35 16 43 H 0.10 1.90 7.43 -52.48 -0.39 1.51 16 44 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 47 H 0.18 4.27 4.54 -52.69 -0.24 4.03 16 48 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -27.66 387.12 -11.45 -39.11 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.52 Total: 8.92 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -4.41 Total: -28.36 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.12 Total: -37.27 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.66 -11.45 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207573130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.217 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds