Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35906 * 116.99831 * 2 1 4 4 C 1.38748 * 120.05424 * 359.72261 * 3 2 1 5 5 C 1.38133 * 119.93932 * 179.70405 * 4 3 2 6 6 C 1.38281 * 120.05337 * 0.58924 * 5 4 3 7 7 C 1.38245 * 120.11714 * 359.68573 * 6 5 4 8 8 C 1.50693 * 119.97632 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47069 * 270.02354 * 8 7 6 10 10 C 1.52996 * 109.47254 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.47567 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99388 * 270.00125 * 11 10 9 13 13 H 1.07998 * 120.00692 * 5.76918 * 12 11 10 14 14 C 1.38820 * 119.99477 * 185.77135 * 12 11 10 15 15 N 1.31615 * 119.99772 * 355.02783 * 14 12 11 16 16 Si 1.86799 * 119.99849 * 175.02549 * 14 12 11 17 17 H 1.48500 * 109.47057 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47032 * 120.00471 * 16 14 12 19 19 H 1.48499 * 109.47167 * 240.00007 * 16 14 12 20 20 C 1.46501 * 119.99906 * 89.99164 * 11 10 9 21 21 C 1.50701 * 109.46706 * 85.46006 * 20 11 10 22 22 C 1.38228 * 120.00496 * 274.99592 * 21 20 11 23 23 C 1.38230 * 120.00225 * 179.76721 * 22 21 20 24 24 C 1.38230 * 120.00141 * 0.50874 * 23 22 21 25 25 C 1.38238 * 119.99830 * 359.74581 * 24 23 22 26 26 C 1.38236 * 120.00085 * 359.97438 * 25 24 23 27 27 C 1.38170 * 120.04968 * 0.02562 * 7 6 5 28 28 H 1.08995 * 109.47208 * 300.00566 * 1 2 3 29 29 H 1.09002 * 109.46727 * 60.00531 * 1 2 3 30 30 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.03420 * 359.97304 * 4 3 2 32 32 H 1.08003 * 119.96979 * 180.29859 * 5 4 3 33 33 H 1.08004 * 119.94081 * 179.70435 * 6 5 4 34 34 H 1.08996 * 109.47393 * 30.01641 * 8 7 6 35 35 H 1.09000 * 109.47467 * 150.02199 * 8 7 6 36 36 H 1.08998 * 109.46594 * 299.99357 * 9 8 7 37 37 H 1.08994 * 109.47428 * 59.99842 * 9 8 7 38 38 H 1.09000 * 109.47098 * 299.99767 * 10 9 8 39 39 H 1.09006 * 109.47426 * 59.99252 * 10 9 8 40 40 H 0.97008 * 119.99735 * 179.97438 * 15 14 12 41 41 H 1.08995 * 109.46723 * 205.45988 * 20 11 10 42 42 H 1.08998 * 109.47234 * 325.46553 * 20 11 10 43 43 H 1.08005 * 119.99679 * 359.97438 * 22 21 20 44 44 H 1.08002 * 119.99862 * 180.22687 * 23 22 21 45 45 H 1.07999 * 120.00341 * 179.72450 * 24 23 22 46 46 H 1.08004 * 120.00132 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.00140 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.02117 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9209 3.6048 0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5172 0.0001 8 6 5.5608 2.5982 -0.0008 9 6 6.0692 2.6256 -1.4437 10 6 7.5969 2.7072 -1.4447 11 7 8.0838 2.7329 -2.8262 12 6 8.3746 1.5606 -3.4714 13 1 8.1577 0.6149 -2.9971 14 6 8.9482 1.5878 -4.7353 15 7 9.1225 2.7362 -5.3542 16 14 9.4725 -0.0054 -5.5575 17 1 9.1698 -1.1488 -4.6595 18 1 8.7329 -0.1702 -6.8345 19 1 10.9313 0.0361 -5.8323 20 6 8.2594 4.0126 -3.5174 21 6 9.6179 4.5774 -3.1911 22 6 9.7982 5.3244 -2.0421 23 6 11.0455 5.8384 -1.7405 24 6 12.1101 5.6142 -2.5932 25 6 11.9287 4.8716 -3.7449 26 6 10.6827 4.3527 -4.0437 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2129 2.3204 -0.0108 32 1 1.3340 4.5114 0.0007 33 1 3.7922 4.6381 0.0001 34 1 5.8761 3.5065 0.5126 35 1 5.9718 1.7291 0.5128 36 1 5.7540 1.7173 -1.9572 37 1 5.6582 3.4947 -1.9573 38 1 7.9126 3.6153 -0.9310 39 1 8.0077 1.8379 -0.9311 40 1 9.5237 2.7553 -6.2372 41 1 8.1788 3.8584 -4.5934 42 1 7.4881 4.7104 -3.1915 43 1 8.9653 5.5037 -1.3784 44 1 11.1871 6.4189 -0.8408 45 1 13.0836 6.0195 -2.3597 46 1 12.7604 4.6968 -4.4114 47 1 10.5408 3.7730 -4.9437 48 1 4.0207 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207573130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 33.083063 kcal Electronic energy + Delta-G solvation = -26651.982325 eV Core-core repulsion = 23058.727106 eV Total energy + Delta-G solvation = -3593.255220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07572 -39.89319 -38.78237 -37.63032 -35.24978 -33.24854 -32.23463 -31.50491 -31.28174 -30.34118 -28.17080 -27.28749 -26.88198 -24.26081 -23.45089 -23.09789 -22.40208 -21.62306 -21.21873 -18.98456 -18.64484 -17.26166 -17.19879 -16.92085 -16.91455 -16.63580 -16.02956 -15.67098 -15.48105 -15.31210 -15.00842 -14.92876 -14.43363 -14.36100 -14.05235 -13.87227 -13.80697 -13.28154 -13.13761 -13.11062 -12.77634 -12.74229 -12.61092 -12.43639 -12.30603 -12.08336 -11.98556 -11.90649 -11.81138 -11.65050 -11.61154 -11.34523 -11.15235 -10.60344 -9.75376 -9.47844 -9.21183 -9.14293 -8.66904 -7.41637 -5.16748 0.37972 0.50796 0.80566 0.92239 1.50337 1.53218 1.60016 2.38121 2.54647 2.80856 3.21861 3.33889 3.80993 3.89191 3.95657 4.11307 4.20745 4.29348 4.31855 4.34706 4.38511 4.44166 4.49789 4.51821 4.59555 4.59855 4.67131 4.70920 4.74439 4.88222 4.92621 4.99275 5.01717 5.11425 5.14817 5.26911 5.32655 5.35135 5.49987 5.51040 5.53901 5.59675 5.70559 5.74152 5.86564 5.87205 5.96436 6.13503 6.41037 6.47900 6.56033 6.77915 7.36962 7.98761 8.31675 9.23482 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.002962 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.369963 B = 9451.106584 C =11127.792115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.218 4.218 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.043 4.043 8 C -0.071 4.071 9 C -0.111 4.111 10 C 0.147 3.853 11 N -0.603 5.603 12 C -0.222 4.222 13 H 0.071 0.929 14 C -0.063 4.063 15 N -0.912 5.912 16 Si 0.967 3.033 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.294 1.294 20 C 0.145 3.855 21 C -0.077 4.077 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.156 4.156 26 C -0.127 4.127 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.150 0.850 42 H 0.006 0.994 43 H 0.114 0.886 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.118 0.882 47 H 0.155 0.845 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 2.928 11.212 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.068 3.932 4 C -0.237 4.237 5 C -0.097 4.097 6 C -0.183 4.183 7 C -0.043 4.043 8 C -0.109 4.109 9 C -0.151 4.151 10 C 0.021 3.979 11 N -0.323 5.323 12 C -0.351 4.351 13 H 0.089 0.911 14 C -0.253 4.253 15 N -0.566 5.566 16 Si 0.798 3.202 17 H -0.205 1.205 18 H -0.221 1.221 19 H -0.221 1.221 20 C 0.020 3.980 21 C -0.080 4.080 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.146 4.146 27 C -0.193 4.193 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.165 0.835 42 H 0.024 0.976 43 H 0.132 0.868 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.136 0.864 47 H 0.171 0.829 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.926 2.665 11.077 16.493 hybrid contribution 0.218 -0.872 -0.558 1.058 sum -11.708 1.793 10.519 15.841 Atomic orbital electron populations 1.23331 0.76447 1.05466 1.02276 1.86048 1.23568 1.27121 1.88824 1.19183 0.92288 0.85000 0.96740 1.21476 1.01033 0.91899 1.09267 1.21272 0.94401 0.97946 0.96131 1.21236 0.94438 0.98286 1.04384 1.19848 0.96167 0.92394 0.95911 1.20561 0.89951 1.03581 0.96824 1.21933 0.97422 1.00478 0.95270 1.20933 0.92311 0.99291 0.85364 1.44322 1.75163 1.02465 1.10307 1.19774 1.30394 0.86396 0.98562 0.91074 1.25251 1.02292 0.99303 0.98407 1.69315 1.50853 1.22106 1.14348 0.85154 0.77164 0.79880 0.78013 1.20472 1.22103 1.22133 1.21299 0.88433 0.83354 1.04886 1.20914 0.99129 0.94382 0.93560 1.21283 0.97689 0.99809 0.97292 1.21248 0.92887 1.01461 1.00289 1.21277 0.99381 1.00330 0.95258 1.21506 0.97592 0.99916 0.98442 1.22805 0.91963 0.97189 1.02613 1.20449 0.92080 0.98482 1.08257 0.91368 0.91916 0.86522 0.83226 0.83061 0.84692 0.89464 0.90728 0.94390 0.93538 0.93135 0.94254 0.94064 0.83471 0.97625 0.86821 0.84548 0.84659 0.86391 0.82922 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.38 10.50 -92.50 -0.97 -9.35 16 3 C 0.11 2.96 6.69 22.50 0.15 3.11 16 4 C -0.22 -4.65 9.04 22.37 0.20 -4.45 16 5 C -0.08 -1.65 10.04 22.25 0.22 -1.42 16 6 C -0.17 -3.98 9.70 22.28 0.22 -3.76 16 7 C -0.04 -1.18 5.13 -19.88 -0.10 -1.29 16 8 C -0.07 -1.97 5.34 29.85 0.16 -1.81 16 9 C -0.11 -3.93 5.52 30.59 0.17 -3.76 16 10 C 0.15 5.88 5.69 86.38 0.49 6.37 16 11 N -0.60 -29.35 2.52 -706.33 -1.78 -31.12 16 12 C -0.22 -11.74 9.82 84.04 0.82 -10.92 16 13 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 14 C -0.06 -3.30 5.45 84.86 0.46 -2.84 16 15 N -0.91 -48.41 5.73 21.65 0.12 -48.29 16 16 Si 0.97 44.27 29.56 68.60 2.03 46.30 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 C 0.14 7.05 5.29 85.63 0.45 7.50 16 21 C -0.08 -3.56 5.46 -19.87 -0.11 -3.67 16 22 C -0.14 -5.61 9.35 22.27 0.21 -5.40 16 23 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 24 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 25 C -0.16 -6.21 10.05 22.27 0.22 -5.99 16 26 C -0.13 -5.95 9.21 22.27 0.21 -5.74 16 27 C -0.17 -5.03 9.64 22.37 0.22 -4.81 16 28 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 29 H 0.06 0.78 7.65 -2.39 -0.02 0.76 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 35 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.89 7.05 -2.39 -0.02 1.87 16 39 H 0.04 1.58 8.04 -2.38 -0.02 1.56 16 40 H 0.25 12.76 8.08 -92.70 -0.75 12.01 16 41 H 0.15 8.06 4.56 -61.81 -0.28 7.78 16 42 H 0.01 0.26 8.08 -2.39 -0.02 0.24 16 43 H 0.11 4.09 7.43 -2.91 -0.02 4.06 16 44 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 45 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 47 H 0.15 7.81 4.54 -3.30 -0.02 7.79 16 48 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -61.37 387.12 5.64 -55.73 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.68 Total: 33.64 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 5.55 Total: -46.91 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.65 Total: -79.41 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.97 Total: -9.35 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.37 5.64 -55.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207573130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.815 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds