Wall clock time and date at job start Tue Mar 31 2020 15:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00101 * 2 1 4 4 H 1.48497 * 109.47215 * 269.99558 * 3 2 1 5 5 H 1.48494 * 109.47260 * 30.00128 * 3 2 1 6 6 H 1.48502 * 109.46925 * 149.99934 * 3 2 1 7 7 C 1.37880 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00443 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99604 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.46837 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.93927 * 269.97775 * 10 9 7 12 12 C 1.38301 * 120.22994 * 179.97438 * 11 10 9 13 13 C 1.38047 * 120.11977 * 359.75827 * 12 11 10 14 14 C 1.39283 * 119.88153 * 0.53878 * 13 12 11 15 15 C 1.48473 * 120.11772 * 179.71631 * 14 13 12 16 16 C 1.40848 * 126.22396 * 179.70052 * 15 14 13 17 17 N 1.30664 * 108.09780 * 180.02562 * 16 15 14 18 18 N 1.40014 * 108.52794 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.89614 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47168 * 305.02782 * 19 18 17 21 21 N 1.46905 * 109.47022 * 179.97438 * 20 19 18 22 22 C 1.48560 * 110.99577 * 189.99713 * 21 20 19 23 23 C 1.54378 * 104.69549 * 200.89794 * 22 21 20 24 24 C 1.54571 * 104.91190 * 23.88545 * 23 22 21 25 25 C 1.48555 * 110.99889 * 74.58193 * 21 20 19 26 26 C 1.34831 * 108.21015 * 0.26481 * 18 17 16 27 27 C 1.38010 * 119.93959 * 89.99672 * 10 9 7 28 28 H 0.96997 * 120.00047 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47322 * 59.99945 * 9 7 2 30 30 H 1.08993 * 109.46758 * 299.99359 * 9 7 2 31 31 H 1.07992 * 119.88451 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.93656 * 180.02562 * 12 11 10 33 33 H 1.07998 * 120.05816 * 180.25037 * 13 12 11 34 34 H 1.08000 * 125.94344 * 359.96123 * 16 15 14 35 35 H 1.08998 * 109.47057 * 185.02511 * 19 18 17 36 36 H 1.09002 * 109.46629 * 65.02182 * 19 18 17 37 37 H 1.08998 * 109.47352 * 59.99911 * 20 19 18 38 38 H 1.08997 * 109.46721 * 299.99986 * 20 19 18 39 39 H 1.09002 * 110.41441 * 319.73871 * 22 21 20 40 40 H 1.09002 * 110.41248 * 82.06172 * 22 21 20 41 41 H 1.09006 * 110.32557 * 142.80924 * 23 22 21 42 42 H 1.08996 * 110.32821 * 265.02105 * 23 22 21 43 43 H 1.08995 * 110.29758 * 241.08109 * 24 23 22 44 44 H 1.09004 * 110.32005 * 118.89089 * 24 23 22 45 45 H 1.09005 * 110.41154 * 277.81401 * 25 21 20 46 46 H 1.08998 * 110.41848 * 40.13562 * 25 21 20 47 47 H 1.07994 * 126.19293 * 179.74386 * 26 18 17 48 48 H 1.07999 * 120.05623 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6150 -0.0001 11 6 4.2438 -3.2661 1.1987 12 6 4.7043 -4.5702 1.2056 13 6 4.9319 -5.2308 0.0150 14 6 4.7078 -4.5778 -1.1947 15 6 4.9570 -5.2812 -2.4783 16 6 4.7691 -4.7494 -3.7689 17 7 5.0941 -5.6692 -4.6382 18 7 5.4996 -6.8150 -3.9430 19 6 5.9451 -8.0733 -4.5467 20 6 4.8728 -8.5839 -5.5113 21 7 5.3198 -9.8453 -6.1171 22 6 4.4226 -10.2484 -7.2305 23 6 4.6607 -11.7647 -7.3960 24 6 5.1879 -12.2369 -6.0218 25 6 5.2229 -10.9657 -5.1464 26 6 5.4043 -6.5621 -2.6221 27 6 4.2437 -3.2642 -1.1961 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6809 0.8905 30 1 3.8751 -0.6798 -0.8895 31 1 4.0633 -2.7542 2.1323 32 1 4.8819 -5.0741 2.1442 33 1 5.2876 -6.2505 0.0216 34 1 4.4166 -3.7550 -3.9997 35 1 6.1114 -8.8131 -3.7637 36 1 6.8741 -7.9059 -5.0917 37 1 4.7065 -7.8441 -6.2944 38 1 3.9438 -8.7511 -4.9663 39 1 3.3823 -10.0531 -6.9703 40 1 4.6906 -9.7195 -8.1451 41 1 3.7262 -12.2705 -7.6390 42 1 5.4044 -11.9489 -8.1712 43 1 6.1898 -12.6538 -6.1241 44 1 4.5119 -12.9752 -5.5903 45 1 6.0948 -10.9785 -4.4924 46 1 4.3089 -10.8815 -4.5585 47 1 5.6416 -7.2483 -1.8227 48 1 4.0636 -2.7549 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222475416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:32 Heat of formation + Delta-G solvation = 98.519953 kcal Electronic energy + Delta-G solvation = -25706.945986 eV Core-core repulsion = 22148.821074 eV Total energy + Delta-G solvation = -3558.124912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 5.78 seconds Orbital eigenvalues (eV) -41.21120 -39.34653 -38.46491 -34.79313 -33.50414 -32.15361 -31.68715 -30.97685 -29.42773 -29.13394 -27.57104 -27.06707 -23.91517 -22.98313 -22.47746 -21.46940 -21.41738 -21.00301 -19.97131 -19.25857 -17.35619 -16.74307 -16.46275 -16.35112 -15.70055 -15.38815 -14.85161 -14.58253 -14.49117 -14.38730 -14.05368 -13.83956 -13.39793 -13.11633 -12.92886 -12.84980 -12.68510 -12.45382 -12.30870 -12.09011 -11.89958 -11.86796 -11.66301 -11.59800 -11.39230 -11.11968 -10.98793 -10.89450 -10.52591 -10.23456 -10.06738 -9.88724 -9.45169 -9.38306 -9.19307 -9.04434 -8.56052 -7.92512 -7.38203 -6.05063 -4.03879 1.49853 2.08791 2.12076 2.34293 3.17308 3.30565 3.38295 3.41224 3.53345 4.09060 4.16141 4.37399 4.43605 4.45322 4.58753 4.67111 4.76397 4.78238 4.84695 4.95701 5.04625 5.14736 5.24704 5.27242 5.29172 5.30876 5.36161 5.43817 5.50277 5.53339 5.55223 5.60679 5.67349 5.71560 5.80936 5.94955 6.10061 6.30411 6.33808 6.41798 6.51004 6.69889 6.71449 6.92426 6.99553 7.05754 7.10429 7.18906 7.63619 7.64070 7.71714 7.75438 8.52349 9.00887 9.55289 11.07908 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002033 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.836248 B =13766.215003 C =14376.517448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.024 4.024 11 C -0.127 4.127 12 C -0.118 4.118 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.180 4.180 16 C 0.066 3.934 17 N -0.297 5.297 18 N -0.375 5.375 19 C 0.145 3.855 20 C 0.034 3.966 21 N -0.510 5.510 22 C 0.033 3.967 23 C -0.125 4.125 24 C -0.124 4.124 25 C 0.025 3.975 26 C 0.059 3.941 27 C -0.115 4.115 28 H 0.264 0.736 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.187 0.813 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.173 0.827 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.351 -23.475 -10.339 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.024 4.024 11 C -0.145 4.145 12 C -0.136 4.136 13 C -0.164 4.164 14 C -0.008 4.008 15 C -0.191 4.191 16 C -0.121 4.121 17 N -0.117 5.117 18 N -0.157 5.157 19 C 0.023 3.977 20 C -0.095 4.095 21 N -0.235 5.235 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.087 4.087 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.204 0.796 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.190 0.810 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.899 -23.702 -11.842 29.920 hybrid contribution -0.735 0.986 1.256 1.758 sum 13.164 -22.716 -10.586 28.308 Atomic orbital electron populations 1.69901 1.06251 1.26918 1.50804 1.25004 0.94740 0.99009 0.94566 0.86809 0.80402 0.83690 0.78648 1.20155 1.21308 1.18917 1.20935 0.88260 0.94641 1.51068 0.90804 1.18822 0.97461 0.88736 0.97354 1.20188 0.92394 0.97806 0.92045 1.21070 1.00530 0.94729 0.98159 1.20908 1.00427 0.95083 0.97169 1.20769 1.04654 0.99057 0.91920 1.17962 0.99445 0.93382 0.90005 1.18999 1.12354 0.94161 0.93620 1.24072 0.98486 0.99219 0.90300 1.77200 1.20723 0.92956 1.20836 1.48386 1.51856 1.11428 1.04054 1.21491 0.98062 0.80982 0.97175 1.22493 0.95975 0.92727 0.98350 1.65285 1.48642 1.01556 1.07982 1.23107 0.95092 0.95975 0.95304 1.22348 1.01420 0.94732 0.97793 1.22340 1.01922 0.96883 0.95117 1.23245 1.01136 0.90844 0.95081 1.22460 1.01875 0.97729 0.86644 1.20968 1.00551 0.93549 0.98264 0.92648 0.95405 0.95816 0.86490 0.86966 0.87444 0.79574 0.88983 0.88959 0.89048 0.93736 0.93565 0.89769 0.91198 0.90831 0.90859 0.91245 0.89939 0.93519 0.80990 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -14.53 9.65 -34.44 -0.33 -14.86 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 9 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 10 C -0.02 -0.51 5.07 -104.67 -0.53 -1.04 16 11 C -0.13 -2.41 9.69 -39.52 -0.38 -2.79 16 12 C -0.12 -1.90 10.03 -39.63 -0.40 -2.30 16 13 C -0.15 -2.24 9.57 -39.26 -0.38 -2.62 16 14 C -0.01 -0.11 5.88 -104.89 -0.62 -0.73 16 15 C -0.18 -2.70 6.04 -105.34 -0.64 -3.33 16 16 C 0.07 0.98 11.42 -17.06 -0.19 0.79 16 17 N -0.30 -4.32 12.38 30.80 0.38 -3.93 16 18 N -0.38 -4.52 3.67 -61.10 -0.22 -4.74 16 19 C 0.14 1.25 6.61 -4.04 -0.03 1.22 16 20 C 0.03 0.30 5.01 -3.82 -0.02 0.28 16 21 N -0.51 -3.91 5.34 -229.97 -1.23 -5.13 16 22 C 0.03 0.23 6.45 -2.18 -0.01 0.21 16 23 C -0.12 -0.68 7.02 -25.18 -0.18 -0.85 16 24 C -0.12 -0.65 7.01 -25.18 -0.18 -0.83 16 25 C 0.02 0.15 5.91 -2.19 -0.01 0.14 16 26 C 0.06 0.72 10.83 -16.88 -0.18 0.53 16 27 C -0.11 -2.21 9.23 -39.26 -0.36 -2.57 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 30 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 31 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.31 7.02 -52.49 -0.37 0.94 16 34 H 0.19 2.52 7.35 -52.49 -0.39 2.13 16 35 H 0.09 0.59 7.39 -51.93 -0.38 0.20 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.04 0.43 7.77 -51.93 -0.40 0.02 16 39 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 46 H 0.05 0.31 7.75 -51.93 -0.40 -0.10 16 47 H 0.17 1.54 7.28 -52.49 -0.38 1.16 16 48 H 0.12 2.18 7.05 -52.49 -0.37 1.81 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -32.73 390.08 -11.41 -44.14 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.67 Total: 0.59 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -4.66 Total: -26.68 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.30 Total: -40.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.73 -11.41 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222475416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.658 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.78 seconds