Wall clock time and date at job start Tue Mar 31 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47191 * 2 1 4 4 C 1.46507 * 120.00141 * 269.99355 * 3 2 1 5 5 C 1.52996 * 109.47368 * 270.00358 * 4 3 2 6 6 C 1.39615 * 120.00282 * 90.00272 * 3 2 1 7 7 C 1.39004 * 119.95776 * 179.97438 * 6 3 2 8 8 C 1.37868 * 120.05080 * 179.97438 * 7 6 3 9 9 C 1.39403 * 119.94824 * 0.02562 * 8 7 6 10 10 C 1.48346 * 120.04484 * 179.97438 * 9 8 7 11 11 C 1.39392 * 120.06613 * 359.71906 * 10 9 8 12 12 C 1.37913 * 119.93021 * 179.81343 * 11 10 9 13 13 C 1.38823 * 120.06824 * 0.44445 * 12 11 10 14 14 O 1.35894 * 119.93002 * 179.76321 * 13 12 11 15 15 C 1.42890 * 117.00205 * 0.02599 * 14 13 12 16 16 C 1.50705 * 109.47306 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99501 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00116 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99447 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00084 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47030 * 90.00134 * 20 18 16 22 22 H 1.48500 * 109.47243 * 209.99920 * 20 18 16 23 23 H 1.48503 * 109.47245 * 330.00568 * 20 18 16 24 24 C 1.38826 * 120.13319 * 359.79059 * 13 12 11 25 25 C 1.37909 * 120.06685 * 359.97438 * 24 13 12 26 26 C 1.39402 * 119.90680 * 0.25235 * 9 8 7 27 27 C 1.37860 * 119.95436 * 359.51040 * 26 9 8 28 28 H 1.08995 * 109.47182 * 300.00214 * 1 2 3 29 29 H 1.09004 * 109.46711 * 59.99869 * 1 2 3 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46926 * 239.99808 * 2 1 3 32 32 H 1.09004 * 109.46711 * 120.00131 * 2 1 3 33 33 H 1.08996 * 109.46413 * 30.00733 * 4 3 2 34 34 H 1.09003 * 109.46754 * 150.00361 * 4 3 2 35 35 H 1.08999 * 109.46827 * 299.99972 * 5 4 3 36 36 H 1.08997 * 109.47186 * 59.99791 * 5 4 3 37 37 H 1.08996 * 109.46721 * 179.97438 * 5 4 3 38 38 H 1.08006 * 119.97128 * 359.97430 * 7 6 3 39 39 H 1.08002 * 120.02183 * 179.97438 * 8 7 6 40 40 H 1.08003 * 120.03589 * 0.02562 * 11 10 9 41 41 H 1.08003 * 119.96559 * 180.20900 * 12 11 10 42 42 H 1.09000 * 109.47242 * 299.99471 * 15 14 13 43 43 H 1.09005 * 109.47514 * 59.99656 * 15 14 13 44 44 H 0.96999 * 119.99211 * 180.02562 * 19 18 16 45 45 H 1.07998 * 119.95852 * 179.97438 * 24 13 12 46 46 H 1.08009 * 120.03229 * 179.97438 * 25 24 13 47 47 H 1.08004 * 120.02057 * 179.72541 * 26 9 8 48 48 H 1.07998 * 119.97983 * 180.20482 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2511 2.0393 1.2091 7 6 2.7149 3.3497 1.2080 8 6 2.9449 4.0016 2.4008 9 6 2.7125 3.3455 3.6086 10 6 2.9598 4.0448 4.8933 11 6 3.4305 5.3568 4.8950 12 6 3.6558 6.0055 6.0909 13 6 3.4230 5.3501 7.2924 14 8 3.6505 5.9904 8.4692 15 6 4.1277 7.3352 8.3944 16 6 4.3200 7.8782 9.7870 17 1 4.0995 7.2584 10.6435 18 6 4.7765 9.1667 9.9676 19 7 4.9449 9.6402 11.1830 20 14 5.1572 10.2390 8.4863 21 1 3.9384 10.9908 8.0931 22 1 6.2388 11.1958 8.8326 23 1 5.5969 9.3828 7.3553 24 6 2.9588 4.0418 7.2940 25 6 2.7271 3.3894 6.1012 26 6 2.2528 2.0295 3.6074 27 6 2.0194 1.3829 2.4124 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0957 3.1410 -1.1384 35 1 4.3883 2.2154 -0.9507 36 1 3.8746 0.7621 -1.8407 37 1 3.8891 2.3447 -2.6545 38 1 2.8953 3.8574 0.2719 39 1 3.3058 5.0196 2.3994 40 1 3.6153 5.8660 3.9606 41 1 4.0173 7.0233 6.0929 42 1 5.0786 7.3543 7.8621 43 1 3.4011 7.9496 7.8625 44 1 5.2657 10.5468 11.3100 45 1 2.7791 3.5344 8.2303 46 1 2.3663 2.3713 6.1031 47 1 2.0763 1.5179 4.5421 48 1 1.6602 0.3644 2.4110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243881822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:35 Heat of formation + Delta-G solvation = 13.791054 kcal Electronic energy + Delta-G solvation = -25864.209628 eV Core-core repulsion = 22270.117844 eV Total energy + Delta-G solvation = -3594.091784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.13690 -39.32886 -37.58357 -36.18570 -32.90721 -32.87157 -31.84264 -31.23678 -30.31432 -29.52004 -28.39698 -26.80015 -24.50185 -23.59484 -23.28291 -22.29083 -21.40837 -20.79922 -19.95976 -18.16172 -17.56848 -16.62487 -16.36259 -16.08312 -15.43533 -15.05908 -14.82779 -14.74682 -14.37266 -14.25134 -14.08634 -13.75525 -13.72445 -13.51730 -13.10120 -12.97814 -12.87884 -12.74718 -12.51834 -12.31824 -12.19786 -12.12681 -11.99562 -11.53089 -11.37249 -11.19746 -11.17184 -11.02540 -10.93200 -10.47026 -10.36003 -9.99053 -9.77364 -9.33944 -8.99689 -8.76219 -8.68225 -7.99099 -6.89588 -6.23778 -4.25584 1.06039 1.40373 1.69962 2.23524 2.80275 3.17521 3.24465 3.24965 3.78119 4.18840 4.24906 4.33563 4.44333 4.50080 4.71639 4.78437 4.85389 4.92405 4.97510 4.98875 5.01603 5.06846 5.14416 5.16084 5.26250 5.30900 5.38129 5.42508 5.45916 5.48188 5.61563 5.72698 5.76241 5.79119 5.87085 5.94431 6.01515 6.18973 6.21812 6.35428 6.36028 6.51590 6.66038 6.73213 6.79738 6.81236 6.99886 7.05504 7.16247 7.33939 7.39382 8.01210 8.52640 8.85913 9.32262 10.88551 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.002052 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.361277 B =13638.644705 C =14498.019960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 N -0.630 5.630 4 C 0.120 3.880 5 C -0.173 4.173 6 C 0.208 3.792 7 C -0.192 4.192 8 C -0.071 4.071 9 C -0.079 4.079 10 C -0.097 4.097 11 C -0.073 4.073 12 C -0.213 4.213 13 C 0.149 3.851 14 O -0.302 6.302 15 C 0.167 3.833 16 C -0.528 4.528 17 H 0.086 0.914 18 C 0.077 3.923 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.162 4.162 25 C -0.075 4.075 26 C -0.071 4.071 27 C -0.192 4.192 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.269 0.731 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -18.680 -27.428 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.004 4.004 3 N -0.341 5.341 4 C -0.004 4.004 5 C -0.232 4.232 6 C 0.108 3.892 7 C -0.214 4.214 8 C -0.089 4.089 9 C -0.081 4.081 10 C -0.097 4.097 11 C -0.091 4.091 12 C -0.231 4.231 13 C 0.101 3.899 14 O -0.214 6.214 15 C 0.094 3.906 16 C -0.566 4.566 17 H 0.104 0.896 18 C -0.126 4.126 19 N -0.525 5.525 20 Si 0.699 3.301 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.181 4.181 25 C -0.093 4.093 26 C -0.089 4.089 27 C -0.215 4.215 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.579 -18.650 -27.266 33.683 hybrid contribution 0.309 0.914 -0.866 1.296 sum -6.270 -17.737 -28.132 33.843 Atomic orbital electron populations 1.22237 0.96486 1.01862 1.02569 1.21345 0.93900 0.82641 1.02466 1.46565 1.71744 1.13040 1.02797 1.21348 0.96128 0.97795 0.85093 1.22235 0.97488 1.02012 1.01421 1.17825 0.94281 0.91508 0.85600 1.20566 1.08555 0.94018 0.98301 1.20981 0.97483 0.99300 0.91178 1.18538 1.03500 0.94028 0.92010 1.18475 1.05095 0.94303 0.91855 1.20914 0.97268 0.93669 0.97224 1.21312 1.08030 1.01615 0.92189 1.19383 0.92331 0.92115 0.86029 1.86157 1.78936 1.30157 1.26171 1.21008 0.93393 0.76359 0.99890 1.20778 1.45878 0.99149 0.90807 0.89568 1.24708 0.94640 0.97115 0.96106 1.69855 1.45216 1.16936 1.20493 0.86887 0.78963 0.81001 0.83213 1.19621 1.20433 1.18919 1.20358 1.05839 0.93142 0.98717 1.20877 0.98494 0.99048 0.90928 1.20965 0.96857 0.93738 0.97351 1.20563 1.09417 1.00501 0.90972 0.92110 0.92676 0.91907 0.91160 0.90669 0.91152 0.90676 0.92113 0.92665 0.91906 0.86219 0.85974 0.86217 0.85354 0.96321 0.96788 0.92061 0.85335 0.85816 0.85910 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.12 0.72 5.87 -4.05 -0.02 0.69 16 3 N -0.63 -4.86 2.61 -171.71 -0.45 -5.31 16 4 C 0.12 0.73 5.87 -4.04 -0.02 0.71 16 5 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 6 C 0.21 2.08 6.55 -83.74 -0.55 1.53 16 7 C -0.19 -2.00 9.19 -39.43 -0.36 -2.36 16 8 C -0.07 -0.83 9.42 -39.28 -0.37 -1.20 16 9 C -0.08 -1.02 5.88 -104.87 -0.62 -1.63 16 10 C -0.10 -1.43 5.88 -104.88 -0.62 -2.04 16 11 C -0.07 -1.12 9.42 -39.27 -0.37 -1.49 16 12 C -0.21 -3.87 9.02 -39.48 -0.36 -4.23 16 13 C 0.15 2.98 6.69 -39.15 -0.26 2.72 16 14 O -0.30 -7.20 10.12 -19.41 -0.20 -7.40 16 15 C 0.17 4.19 3.56 36.01 0.13 4.31 16 16 C -0.53 -15.41 9.99 -34.44 -0.34 -15.76 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 19 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 20 Si 0.87 20.78 27.47 -169.99 -4.67 16.12 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 24 C -0.16 -2.74 9.97 -39.48 -0.39 -3.14 16 25 C -0.08 -1.10 9.42 -39.28 -0.37 -1.47 16 26 C -0.07 -0.80 9.42 -39.29 -0.37 -1.17 16 27 C -0.19 -1.95 9.19 -39.43 -0.36 -2.31 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 0.45 6.18 -51.93 -0.32 0.13 16 33 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.07 0.47 6.19 -51.93 -0.32 0.14 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.12 1.04 6.12 -52.48 -0.32 0.72 16 39 H 0.12 1.29 6.19 -52.49 -0.32 0.97 16 40 H 0.12 1.54 6.19 -52.48 -0.33 1.22 16 41 H 0.13 2.35 6.28 -52.48 -0.33 2.02 16 42 H 0.02 0.46 6.71 -51.93 -0.35 0.12 16 43 H 0.01 0.35 7.08 -51.93 -0.37 -0.02 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 46 H 0.12 1.43 6.19 -52.48 -0.33 1.10 16 47 H 0.12 1.21 6.19 -52.48 -0.32 0.88 16 48 H 0.12 1.00 6.12 -52.49 -0.32 0.68 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -31.61 385.07 -10.35 -41.96 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.02 Total: 0.77 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -4.60 Total: -25.90 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.33 Total: -31.34 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.20 Total: -7.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.61 -10.35 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243881822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.751 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds