Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47191 * 2 1 4 4 C 1.46507 * 120.00141 * 269.99355 * 3 2 1 5 5 C 1.52996 * 109.47368 * 270.00358 * 4 3 2 6 6 C 1.39615 * 120.00282 * 90.00272 * 3 2 1 7 7 C 1.39004 * 119.95776 * 179.97438 * 6 3 2 8 8 C 1.37868 * 120.05080 * 179.97438 * 7 6 3 9 9 C 1.39403 * 119.94824 * 0.02562 * 8 7 6 10 10 C 1.48346 * 120.04484 * 179.97438 * 9 8 7 11 11 C 1.39392 * 120.06613 * 359.71906 * 10 9 8 12 12 C 1.37913 * 119.93021 * 179.81343 * 11 10 9 13 13 C 1.38823 * 120.06824 * 0.44445 * 12 11 10 14 14 O 1.35894 * 119.93002 * 179.76321 * 13 12 11 15 15 C 1.42890 * 117.00205 * 0.02599 * 14 13 12 16 16 C 1.50705 * 109.47306 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99501 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00116 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99447 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00084 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47030 * 90.00134 * 20 18 16 22 22 H 1.48500 * 109.47243 * 209.99920 * 20 18 16 23 23 H 1.48503 * 109.47245 * 330.00568 * 20 18 16 24 24 C 1.38826 * 120.13319 * 359.79059 * 13 12 11 25 25 C 1.37909 * 120.06685 * 359.97438 * 24 13 12 26 26 C 1.39402 * 119.90680 * 0.25235 * 9 8 7 27 27 C 1.37860 * 119.95436 * 359.51040 * 26 9 8 28 28 H 1.08995 * 109.47182 * 300.00214 * 1 2 3 29 29 H 1.09004 * 109.46711 * 59.99869 * 1 2 3 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46926 * 239.99808 * 2 1 3 32 32 H 1.09004 * 109.46711 * 120.00131 * 2 1 3 33 33 H 1.08996 * 109.46413 * 30.00733 * 4 3 2 34 34 H 1.09003 * 109.46754 * 150.00361 * 4 3 2 35 35 H 1.08999 * 109.46827 * 299.99972 * 5 4 3 36 36 H 1.08997 * 109.47186 * 59.99791 * 5 4 3 37 37 H 1.08996 * 109.46721 * 179.97438 * 5 4 3 38 38 H 1.08006 * 119.97128 * 359.97430 * 7 6 3 39 39 H 1.08002 * 120.02183 * 179.97438 * 8 7 6 40 40 H 1.08003 * 120.03589 * 0.02562 * 11 10 9 41 41 H 1.08003 * 119.96559 * 180.20900 * 12 11 10 42 42 H 1.09000 * 109.47242 * 299.99471 * 15 14 13 43 43 H 1.09005 * 109.47514 * 59.99656 * 15 14 13 44 44 H 0.96999 * 119.99211 * 180.02562 * 19 18 16 45 45 H 1.07998 * 119.95852 * 179.97438 * 24 13 12 46 46 H 1.08009 * 120.03229 * 179.97438 * 25 24 13 47 47 H 1.08004 * 120.02057 * 179.72541 * 26 9 8 48 48 H 1.07998 * 119.97983 * 180.20482 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2511 2.0393 1.2091 7 6 2.7149 3.3497 1.2080 8 6 2.9449 4.0016 2.4008 9 6 2.7125 3.3455 3.6086 10 6 2.9598 4.0448 4.8933 11 6 3.4305 5.3568 4.8950 12 6 3.6558 6.0055 6.0909 13 6 3.4230 5.3501 7.2924 14 8 3.6505 5.9904 8.4692 15 6 4.1277 7.3352 8.3944 16 6 4.3200 7.8782 9.7870 17 1 4.0995 7.2584 10.6435 18 6 4.7765 9.1667 9.9676 19 7 4.9449 9.6402 11.1830 20 14 5.1572 10.2390 8.4863 21 1 3.9384 10.9908 8.0931 22 1 6.2388 11.1958 8.8326 23 1 5.5969 9.3828 7.3553 24 6 2.9588 4.0418 7.2940 25 6 2.7271 3.3894 6.1012 26 6 2.2528 2.0295 3.6074 27 6 2.0194 1.3829 2.4124 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0957 3.1410 -1.1384 35 1 4.3883 2.2154 -0.9507 36 1 3.8746 0.7621 -1.8407 37 1 3.8891 2.3447 -2.6545 38 1 2.8953 3.8574 0.2719 39 1 3.3058 5.0196 2.3994 40 1 3.6153 5.8660 3.9606 41 1 4.0173 7.0233 6.0929 42 1 5.0786 7.3543 7.8621 43 1 3.4011 7.9496 7.8625 44 1 5.2657 10.5468 11.3100 45 1 2.7791 3.5344 8.2303 46 1 2.3663 2.3713 6.1031 47 1 2.0763 1.5179 4.5421 48 1 1.6602 0.3644 2.4110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243881822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = -1.674996 kcal Electronic energy + Delta-G solvation = -25864.880286 eV Core-core repulsion = 22270.117844 eV Total energy + Delta-G solvation = -3594.762442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.16441 -40.47478 -38.72231 -37.21810 -35.01522 -33.42586 -32.85499 -32.29558 -31.29637 -30.76203 -29.89416 -27.76736 -25.33603 -24.85860 -24.24455 -23.51749 -22.37137 -21.95948 -20.82264 -19.61312 -18.77687 -18.30506 -17.23846 -17.06718 -16.74881 -16.58030 -16.06611 -15.90188 -15.39222 -15.21549 -14.97382 -14.80577 -14.57693 -14.41079 -14.37301 -14.04398 -13.88880 -13.73142 -13.56240 -13.37914 -13.22070 -13.05020 -12.83647 -12.81058 -12.66967 -12.25091 -12.12023 -12.05020 -11.85230 -11.84824 -11.83536 -11.50259 -11.23865 -10.94732 -10.74067 -9.95407 -9.80224 -9.12637 -8.44840 -7.82949 -6.55596 -0.00153 0.43373 0.60488 1.14452 1.30164 1.33124 1.43489 2.23028 2.23355 2.58607 2.74385 2.87180 3.25651 3.78043 3.86814 3.92967 3.99696 4.03792 4.16154 4.25296 4.27880 4.31192 4.39409 4.46641 4.52436 4.53233 4.56030 4.61282 4.69037 4.74870 4.76504 4.78128 4.94589 4.97982 5.00408 5.01564 5.08114 5.20259 5.22912 5.26188 5.32297 5.34757 5.42605 5.50548 5.53363 5.62381 5.83303 5.96117 5.96681 6.04897 6.45256 6.48455 6.63121 6.76667 7.08460 8.71641 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.002052 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.361277 B =13638.644705 C =14498.019960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.628 5.628 4 C 0.114 3.886 5 C -0.167 4.167 6 C 0.213 3.787 7 C -0.202 4.202 8 C -0.073 4.073 9 C -0.111 4.111 10 C -0.080 4.080 11 C -0.078 4.078 12 C -0.220 4.220 13 C 0.101 3.899 14 O -0.334 6.334 15 C 0.182 3.818 16 C -0.555 4.555 17 H 0.035 0.965 18 C 0.020 3.980 19 N -0.933 5.933 20 Si 0.951 3.049 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.244 1.244 24 C -0.164 4.164 25 C -0.074 4.074 26 C -0.070 4.070 27 C -0.200 4.200 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.123 0.877 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.276 0.724 45 H 0.133 0.867 46 H 0.157 0.843 47 H 0.135 0.865 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -19.951 -32.046 38.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 N -0.338 5.338 4 C -0.008 4.008 5 C -0.226 4.226 6 C 0.110 3.890 7 C -0.224 4.224 8 C -0.092 4.092 9 C -0.113 4.113 10 C -0.080 4.080 11 C -0.096 4.096 12 C -0.238 4.238 13 C 0.055 3.945 14 O -0.248 6.248 15 C 0.108 3.892 16 C -0.593 4.593 17 H 0.053 0.947 18 C -0.179 4.179 19 N -0.572 5.572 20 Si 0.771 3.229 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.168 1.168 24 C -0.183 4.183 25 C -0.091 4.091 26 C -0.088 4.088 27 C -0.223 4.223 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.151 0.849 46 H 0.174 0.826 47 H 0.153 0.847 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.051 -19.968 -31.920 38.306 hybrid contribution 0.353 1.038 0.384 1.162 sum -6.698 -18.929 -31.536 37.386 Atomic orbital electron populations 1.22178 0.96084 1.02588 1.01729 1.21517 0.94140 0.81763 1.03391 1.46826 1.70695 1.13668 1.02629 1.21510 0.96755 0.97820 0.84735 1.22175 0.96732 1.02129 1.01539 1.18037 0.92921 0.91500 0.86539 1.20743 1.08726 0.94397 0.98527 1.21141 0.97041 0.99724 0.91288 1.18508 1.06495 0.94993 0.91325 1.18809 1.02391 0.93913 0.92934 1.21178 0.97022 0.94183 0.97193 1.21359 1.08376 1.01559 0.92551 1.19735 0.95904 0.93456 0.85396 1.86068 1.80376 1.29551 1.28786 1.20638 0.93928 0.77567 0.97071 1.21017 1.47002 0.99610 0.91635 0.94661 1.25776 0.93724 0.98470 0.99979 1.70003 1.45938 1.17854 1.23373 0.85675 0.79496 0.78793 0.78898 1.18063 1.19309 1.16767 1.20573 1.05383 0.92242 1.00109 1.21210 0.97727 1.00329 0.89876 1.21158 0.96000 0.93236 0.98455 1.20769 1.09461 1.01352 0.90671 0.93681 0.92704 0.90468 0.89477 0.90554 0.89438 0.90727 0.93757 0.92585 0.90538 0.84740 0.85284 0.83645 0.85878 0.95667 0.95800 0.91435 0.84870 0.82559 0.84680 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 71.98 0.74 -0.66 16 2 C 0.11 1.00 5.87 86.38 0.51 1.51 16 3 N -0.63 -7.81 2.61 -697.17 -1.82 -9.63 16 4 C 0.11 1.04 5.87 86.38 0.51 1.55 16 5 C -0.17 -1.46 10.24 71.98 0.74 -0.73 16 6 C 0.21 3.67 6.55 38.27 0.25 3.93 16 7 C -0.20 -3.69 9.19 22.37 0.21 -3.48 16 8 C -0.07 -1.55 9.42 22.46 0.21 -1.34 16 9 C -0.11 -2.62 5.88 -20.02 -0.12 -2.74 16 10 C -0.08 -2.23 5.88 -20.03 -0.12 -2.34 16 11 C -0.08 -2.31 9.42 22.47 0.21 -2.10 16 12 C -0.22 -8.00 9.02 22.33 0.20 -7.80 16 13 C 0.10 4.15 6.69 22.55 0.15 4.30 16 14 O -0.33 -16.78 10.12 -92.36 -0.93 -17.72 16 15 C 0.18 9.41 3.56 71.24 0.25 9.67 16 16 C -0.56 -34.15 9.99 25.60 0.26 -33.89 16 17 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 18 C 0.02 1.17 5.47 84.65 0.46 1.64 16 19 N -0.93 -58.38 13.96 21.45 0.30 -58.08 16 20 Si 0.95 42.94 27.47 68.60 1.88 44.83 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 24 C -0.16 -5.63 9.97 22.33 0.22 -5.41 16 25 C -0.07 -2.04 9.42 22.47 0.21 -1.83 16 26 C -0.07 -1.41 9.42 22.46 0.21 -1.20 16 27 C -0.20 -3.52 9.19 22.37 0.21 -3.31 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.51 8.07 -2.38 -0.02 0.49 16 32 H 0.08 0.67 6.18 -2.38 -0.01 0.66 16 33 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 34 H 0.07 0.71 6.19 -2.39 -0.01 0.69 16 35 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.13 1.98 6.12 -2.91 -0.02 1.96 16 39 H 0.13 2.43 6.19 -2.91 -0.02 2.42 16 40 H 0.15 3.45 6.19 -2.91 -0.02 3.43 16 41 H 0.12 4.50 6.28 -2.91 -0.02 4.48 16 42 H 0.03 1.26 6.71 -2.39 -0.02 1.25 16 43 H 0.02 1.18 7.08 -2.38 -0.02 1.16 16 44 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 46 H 0.16 3.20 6.19 -2.91 -0.02 3.19 16 47 H 0.14 2.26 6.19 -2.91 -0.02 2.25 16 48 H 0.14 1.87 6.12 -2.91 -0.02 1.85 16 Total: -1.00 -72.33 385.07 5.65 -66.69 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.90 Total: 18.16 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 5.31 Total: -44.25 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.52 Total: -67.71 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.93 Total: -17.72 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -72.33 5.65 -66.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243881822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.012 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds