Wall clock time and date at job start Tue Mar 31 2020 15:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48503 * 109.47066 * 239.99738 * 3 2 1 5 5 H 1.48496 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00095 * 3 2 1 7 7 C 1.37875 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.47730 * 111.00033 * 73.61241 * 10 9 7 12 12 C 1.52273 * 87.55669 * 137.73458 * 11 10 9 13 13 C 1.47719 * 111.00116 * 170.00216 * 10 9 7 14 14 C 1.52686 * 122.13919 * 99.93381 * 12 11 10 15 15 N 1.48219 * 85.72060 * 104.13038 * 14 12 11 16 16 C 1.46897 * 111.00434 * 136.73900 * 15 14 12 17 17 C 1.52998 * 109.47244 * 90.28350 * 16 15 14 18 18 C 1.50700 * 109.47095 * 180.02562 * 17 16 15 19 19 C 1.34245 * 126.49870 * 265.02688 * 18 17 16 20 20 N 1.36826 * 109.92498 * 179.97438 * 19 18 17 21 21 H 0.97004 * 125.05668 * 179.97438 * 20 19 18 22 22 C 1.37683 * 109.88015 * 359.97438 * 20 19 18 23 23 C 1.39125 * 133.51090 * 180.02562 * 22 20 19 24 24 C 1.37748 * 119.77838 * 179.25816 * 23 22 20 25 25 C 1.38838 * 120.66693 * 0.63601 * 24 23 22 26 26 C 1.36620 * 120.52233 * 359.58053 * 25 24 23 27 27 C 1.39629 * 119.77170 * 0.02562 * 26 25 24 28 28 C 1.48223 * 91.06934 * 23.71396 * 15 14 12 29 29 H 0.97001 * 119.99343 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47133 * 60.00399 * 9 7 2 31 31 H 1.08996 * 109.47320 * 300.00139 * 9 7 2 32 32 H 1.09000 * 113.53812 * 252.40619 * 11 10 9 33 33 H 1.09000 * 113.53527 * 23.06586 * 11 10 9 34 34 H 1.09004 * 113.53850 * 336.93631 * 13 10 9 35 35 H 1.09002 * 113.54289 * 107.59608 * 13 10 9 36 36 H 1.08994 * 113.83627 * 218.32633 * 14 12 11 37 37 H 1.09002 * 113.83364 * 349.93725 * 14 12 11 38 38 H 1.09003 * 109.47412 * 210.29018 * 16 15 14 39 39 H 1.09011 * 109.46666 * 330.28197 * 16 15 14 40 40 H 1.08997 * 109.47255 * 300.00288 * 17 16 15 41 41 H 1.08998 * 109.46809 * 60.00201 * 17 16 15 42 42 H 1.07999 * 125.03627 * 359.92378 * 19 18 17 43 43 H 1.08002 * 120.10982 * 359.97438 * 23 22 20 44 44 H 1.08007 * 119.66920 * 180.24166 * 24 23 22 45 45 H 1.07995 * 119.73489 * 179.60252 * 25 24 23 46 46 H 1.08005 * 120.11349 * 180.02562 * 26 25 24 47 47 H 1.09001 * 113.83288 * 222.08691 * 28 15 14 48 48 H 1.09002 * 113.83125 * 90.48640 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.8453 -3.7654 1.3226 12 6 2.6675 -5.2695 1.1661 13 6 1.5172 -4.9007 0.2389 14 6 3.8092 -6.1805 0.7212 15 7 3.8906 -6.5879 2.1439 16 6 4.0573 -8.0422 2.2664 17 6 5.5483 -8.3854 2.2802 18 6 5.7192 -9.8774 2.4052 19 6 5.9138 -10.5664 3.5408 20 7 6.0244 -11.9016 3.2630 21 1 6.1689 -12.5979 3.9227 22 6 5.9000 -12.1097 1.9076 23 6 5.9327 -13.2463 1.1060 24 6 5.7578 -13.1287 -0.2552 25 6 5.5620 -11.8844 -0.8391 26 6 5.5308 -10.7548 -0.0713 27 6 5.6977 -10.8516 1.3116 28 6 2.4790 -6.1944 2.3662 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8896 32 1 3.8885 -3.4498 1.3399 33 1 2.2612 -3.3406 2.1390 34 1 0.5615 -4.7936 0.7522 35 1 1.4529 -5.5319 -0.6474 36 1 3.4979 -6.9815 0.0508 37 1 4.6885 -5.6431 0.3660 38 1 3.5972 -8.3839 3.1936 39 1 3.5787 -8.5353 1.4201 40 1 6.0083 -8.0437 1.3530 41 1 6.0267 -7.8923 3.1264 42 1 5.9749 -10.1313 4.5274 43 1 6.0831 -14.2189 1.5509 44 1 5.7797 -14.0127 -0.8754 45 1 5.4329 -11.8090 -1.9087 46 1 5.3776 -9.7902 -0.5324 47 1 2.3112 -5.6680 3.3058 48 1 1.7649 -6.9997 2.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:22 Heat of formation + Delta-G solvation = 129.927901 kcal Electronic energy + Delta-G solvation = -26157.571336 eV Core-core repulsion = 22600.808375 eV Total energy + Delta-G solvation = -3556.762961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -41.51856 -40.68357 -37.42028 -37.11011 -34.03602 -32.75712 -31.15829 -29.64506 -29.33096 -28.01989 -26.08504 -25.64582 -25.30420 -23.63579 -23.08172 -22.01126 -21.42940 -20.23847 -19.53142 -18.03512 -17.75297 -16.64261 -16.40020 -15.76887 -15.62764 -15.50779 -14.99386 -14.71514 -14.60492 -14.29862 -14.12712 -13.99830 -13.77650 -13.13876 -13.10376 -12.66878 -12.49099 -12.45080 -12.19162 -11.91246 -11.89554 -11.68561 -11.52660 -11.22031 -11.07657 -10.82366 -10.76556 -10.60609 -10.37533 -10.12162 -9.95169 -9.79774 -9.48763 -9.12577 -8.63232 -8.46589 -8.44299 -7.87261 -7.74336 -6.01715 -4.03201 0.88547 1.39297 2.42101 2.85183 3.35683 3.39034 3.42749 3.67846 3.98337 4.43865 4.47138 4.54725 4.60717 4.74342 4.76949 4.89076 4.96019 5.04242 5.16950 5.24838 5.28048 5.30973 5.34943 5.41825 5.51839 5.54927 5.58685 5.69320 5.73973 5.76430 5.93438 6.00058 6.05911 6.08396 6.15083 6.19709 6.26258 6.38448 6.38580 6.44630 6.48977 6.51877 6.59523 6.61640 6.78825 6.92511 7.19009 7.24727 7.26587 7.67432 7.93196 8.18675 8.47693 9.04219 9.61092 11.09516 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.001952 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.688010 B =14337.537991 C =14705.561009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.160 3.840 10 N -0.469 5.469 11 C 0.050 3.950 12 C -0.122 4.122 13 C 0.007 3.993 14 C 0.038 3.962 15 N -0.478 5.478 16 C 0.028 3.972 17 C -0.035 4.035 18 C -0.162 4.162 19 C 0.049 3.951 20 N -0.598 5.598 21 H 0.414 0.586 22 C 0.094 3.906 23 C -0.134 4.134 24 C -0.100 4.100 25 C -0.149 4.149 26 C -0.067 4.067 27 C -0.102 4.102 28 C 0.016 3.984 29 H 0.262 0.738 30 H 0.031 0.969 31 H -0.002 1.002 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.170 0.830 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 -27.981 6.394 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.034 3.966 10 N -0.192 5.192 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.090 4.090 15 N -0.200 5.200 16 C -0.100 4.100 17 C -0.074 4.074 18 C -0.170 4.170 19 C -0.077 4.077 20 N -0.200 5.200 21 H 0.251 0.749 22 C -0.013 4.013 23 C -0.155 4.155 24 C -0.119 4.119 25 C -0.168 4.168 26 C -0.086 4.086 27 C -0.106 4.106 28 C -0.113 4.113 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.187 0.813 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.106 0.894 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.926 -27.526 6.317 30.656 hybrid contribution -0.829 0.052 0.572 1.008 sum 11.097 -27.474 6.888 30.420 Atomic orbital electron populations 1.69955 1.06066 1.26875 1.50958 1.25000 0.94888 0.99379 0.95363 0.86540 0.79429 0.82634 0.78706 1.20140 1.21367 1.20222 1.21062 0.93439 0.89960 1.50230 0.92023 1.20219 0.91001 0.88919 0.96472 1.68959 1.21905 1.01749 1.26545 1.23134 1.01202 0.90201 0.93403 1.22962 0.97126 0.96336 0.95871 1.23556 0.95614 0.95341 0.97798 1.23578 0.98419 0.97007 0.89985 1.68502 1.21832 1.13299 1.16405 1.22627 0.96552 0.89749 1.01109 1.19769 0.95911 0.88606 1.03089 1.20328 1.10467 0.95092 0.91073 1.21652 1.04409 0.82146 0.99467 1.41717 1.64447 1.07872 1.05992 0.74937 1.18275 1.03812 0.95631 0.83621 1.20005 1.06623 0.95557 0.93300 1.20808 0.99755 0.97709 0.93639 1.20655 1.03949 0.92351 0.99864 1.20337 0.97918 0.98806 0.91489 1.19134 1.05948 0.92101 0.93459 1.23728 0.90113 0.97842 0.99628 0.92883 0.95098 0.98390 0.90521 0.91478 0.91929 0.90989 0.91320 0.88992 0.91432 0.94018 0.91164 0.90545 0.81320 0.86500 0.85900 0.86031 0.86027 0.89366 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.61 8.94 -34.44 -0.31 -14.92 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.16 4.26 4.58 -4.97 -0.02 4.23 16 10 N -0.47 -10.39 6.40 -245.98 -1.57 -11.97 16 11 C 0.05 0.97 7.12 -6.67 -0.05 0.92 16 12 C -0.12 -1.91 1.46 -155.81 -0.23 -2.14 16 13 C 0.01 0.12 7.54 -6.68 -0.05 0.07 16 14 C 0.04 0.53 7.78 -3.26 -0.03 0.50 16 15 N -0.48 -6.17 6.15 -245.34 -1.51 -7.68 16 16 C 0.03 0.31 4.78 -3.83 -0.02 0.29 16 17 C -0.04 -0.36 6.05 -27.88 -0.17 -0.53 16 18 C -0.16 -1.61 5.57 -102.71 -0.57 -2.18 16 19 C 0.05 0.39 11.73 -16.73 -0.20 0.19 16 20 N -0.60 -4.40 6.07 -10.65 -0.06 -4.46 16 21 H 0.41 1.74 8.96 -40.82 -0.37 1.38 16 22 C 0.09 0.90 7.28 -83.99 -0.61 0.29 16 23 C -0.13 -1.12 10.08 -39.43 -0.40 -1.52 16 24 C -0.10 -0.81 10.01 -39.54 -0.40 -1.21 16 25 C -0.15 -1.33 9.97 -39.94 -0.40 -1.73 16 26 C -0.07 -0.69 10.05 -39.65 -0.40 -1.08 16 27 C -0.10 -1.10 6.35 -105.14 -0.67 -1.77 16 28 C 0.02 0.21 7.78 -3.26 -0.03 0.19 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.00 -0.05 7.58 -51.93 -0.39 -0.44 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 34 H 0.06 1.13 7.77 -51.93 -0.40 0.73 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.04 0.48 7.39 -51.92 -0.38 0.09 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -32.39 391.60 -13.94 -46.34 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.79 Total: 0.11 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -4.63 Total: -18.90 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -2.41 Total: -50.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -13.94 -46.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.265 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds