Wall clock time and date at job start Tue Mar 31 2020 16:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39671 * 119.99757 * 2 1 4 4 C 1.38929 * 120.07662 * 5.76129 * 3 2 1 5 5 C 1.38087 * 119.92098 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.07755 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.92471 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.15249 * 359.78981 * 6 5 4 9 9 C 1.38129 * 120.07267 * 0.46669 * 8 6 5 10 10 C 1.50696 * 120.03753 * 179.79005 * 9 8 6 11 11 N 1.46899 * 109.47192 * 253.43408 * 10 9 8 12 12 C 1.46903 * 111.00195 * 193.87844 * 11 10 9 13 13 C 1.50697 * 109.46957 * 64.47067 * 12 11 10 14 14 H 1.07993 * 120.00439 * 4.58813 * 13 12 11 15 15 C 1.37880 * 119.99915 * 184.58398 * 13 12 11 16 16 N 1.31521 * 120.00082 * 354.89909 * 15 13 12 17 17 Si 1.86799 * 120.00119 * 174.89018 * 15 13 12 18 18 H 1.48507 * 109.46836 * 95.00017 * 17 15 13 19 19 H 1.48504 * 109.47075 * 214.99725 * 17 15 13 20 20 H 1.48491 * 109.47375 * 335.00120 * 17 15 13 21 21 C 1.46898 * 111.00380 * 69.91911 * 11 10 9 22 22 C 1.50698 * 109.47501 * 190.00012 * 21 11 10 23 23 C 1.38663 * 120.41887 * 270.25517 * 22 21 11 24 24 C 1.38640 * 118.41924 * 180.24093 * 23 22 21 25 25 C 1.38224 * 119.16104 * 359.75375 * 24 23 22 26 26 N 1.31859 * 120.76185 * 359.97438 * 25 24 23 27 27 C 1.31882 * 121.72867 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47493 * 184.67145 * 1 2 3 29 29 H 1.09000 * 109.47310 * 304.67188 * 1 2 3 30 30 H 1.08997 * 109.47447 * 64.67403 * 1 2 3 31 31 H 0.97001 * 119.99835 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.03732 * 0.03957 * 4 3 2 33 33 H 1.08006 * 119.95872 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47649 * 89.99876 * 7 6 5 35 35 H 1.09003 * 109.46958 * 209.99762 * 7 6 5 36 36 H 1.08997 * 109.47422 * 329.99696 * 7 6 5 37 37 H 1.07994 * 119.96643 * 180.23466 * 8 6 5 38 38 H 1.09001 * 109.47223 * 133.43395 * 10 9 8 39 39 H 1.09000 * 109.47337 * 13.43066 * 10 9 8 40 40 H 1.08994 * 109.47106 * 184.47047 * 12 11 10 41 41 H 1.09001 * 109.46650 * 304.47057 * 12 11 10 42 42 H 0.96995 * 120.00163 * 179.97438 * 16 15 13 43 43 H 1.09001 * 109.46873 * 70.00163 * 21 11 10 44 44 H 1.09003 * 109.46810 * 310.00594 * 21 11 10 45 45 H 1.07997 * 120.79579 * 359.97009 * 23 22 21 46 46 H 1.07994 * 120.41658 * 179.72967 * 24 23 22 47 47 H 1.07996 * 119.61971 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.62152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4755 2.4106 0.1207 5 6 2.1690 3.6047 0.1198 6 6 3.5468 3.6059 -0.0005 7 6 4.3003 4.9110 -0.0006 8 6 4.2349 2.4122 -0.1159 9 6 3.5469 1.2144 -0.1211 10 6 4.2973 -0.0859 -0.2516 11 7 4.0900 -0.6380 -1.5971 12 6 4.5210 -2.0408 -1.6627 13 6 3.6517 -2.8761 -0.7585 14 1 2.8127 -2.4258 -0.2491 15 6 3.9277 -4.2154 -0.5815 16 7 4.8861 -4.7869 -1.2775 17 14 2.9404 -5.2180 0.6471 18 1 1.8263 -5.9040 -0.0555 19 1 3.8223 -6.2297 1.2827 20 1 2.3878 -4.3176 1.6905 21 6 4.7787 0.1723 -2.6105 22 6 4.3488 -0.2709 -3.9852 23 6 5.0409 -1.2730 -4.6482 24 6 4.6127 -1.6448 -5.9133 25 6 3.5148 -1.0123 -6.4656 26 7 2.8774 -0.0667 -5.8036 27 6 3.2559 0.3117 -4.5983 28 1 -0.3634 -1.0243 0.0837 29 1 -0.3634 0.5846 0.8452 30 1 -0.3634 0.4396 -0.9288 31 1 1.9500 -0.8401 0.0004 32 1 0.3997 2.4103 0.2153 33 1 1.6349 4.5388 0.2131 34 1 4.5713 5.1742 1.0219 35 1 5.2041 4.8086 -0.6011 36 1 3.6705 5.6942 -0.4225 37 1 5.3111 2.4165 -0.2059 38 1 3.9304 -0.7934 0.4919 39 1 5.3609 0.0907 -0.0914 40 1 4.4309 -2.4010 -2.6875 41 1 5.5595 -2.1172 -1.3406 42 1 5.0805 -5.7290 -1.1528 43 1 5.8562 0.0437 -2.5077 44 1 4.5232 1.2227 -2.4709 45 1 5.8959 -1.7496 -4.1918 46 1 5.1306 -2.4186 -6.4604 47 1 3.1746 -1.2964 -7.4505 48 1 2.7092 1.0902 -4.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659270193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:47 Heat of formation + Delta-G solvation = 62.951580 kcal Electronic energy + Delta-G solvation = -28053.050739 eV Core-core repulsion = 24493.383466 eV Total energy + Delta-G solvation = -3559.667273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.87792 -39.38321 -36.66080 -35.40413 -32.85290 -32.53745 -31.48652 -30.98811 -30.52310 -27.44351 -26.97931 -26.15858 -24.42680 -24.13444 -23.12392 -21.97058 -21.26446 -20.55078 -19.43963 -17.25276 -16.67800 -16.41258 -15.89044 -15.72256 -15.17599 -14.94025 -14.54816 -14.21727 -14.00806 -13.83134 -13.56951 -13.49865 -13.35045 -13.27675 -13.13778 -12.63109 -12.46282 -12.29978 -12.03583 -11.98312 -11.76413 -11.67059 -11.47557 -11.36836 -10.98695 -10.76784 -10.70990 -10.64086 -10.30667 -9.97286 -9.48798 -9.42154 -9.26620 -9.04885 -8.61386 -8.50781 -8.34714 -7.32977 -6.80957 -6.14762 -4.15779 1.52560 1.71319 1.81026 2.00385 3.22379 3.30086 3.31272 4.01812 4.14146 4.25714 4.33173 4.82095 5.03831 5.17680 5.19960 5.21936 5.22928 5.31081 5.39721 5.43319 5.46431 5.50208 5.54746 5.68703 5.72565 5.76895 5.77749 5.90338 5.94417 5.98884 6.04055 6.12955 6.18723 6.20774 6.24164 6.34158 6.54058 6.58273 6.73412 6.75457 6.84650 7.02637 7.11487 7.22469 7.24371 7.29434 7.62657 7.85753 7.98349 8.09476 8.32256 8.35887 8.42934 8.90858 9.48137 10.95777 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007851 B = 0.005619 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.542674 B = 4982.244236 C = 7066.169273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.739 5.739 3 C 0.240 3.760 4 C -0.206 4.206 5 C -0.077 4.077 6 C -0.160 4.160 7 C -0.100 4.100 8 C -0.071 4.071 9 C -0.143 4.143 10 C 0.105 3.895 11 N -0.524 5.524 12 C 0.187 3.813 13 C -0.508 4.508 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.096 3.904 22 C -0.108 4.108 23 C -0.058 4.058 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.493 5.493 27 C 0.114 3.886 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.416 0.584 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.038 0.962 41 H -0.009 1.009 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.147 0.853 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 13.025 -1.204 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.370 5.370 3 C 0.134 3.866 4 C -0.229 4.229 5 C -0.096 4.096 6 C -0.162 4.162 7 C -0.157 4.157 8 C -0.090 4.090 9 C -0.148 4.148 10 C -0.023 4.023 11 N -0.248 5.248 12 C 0.062 3.938 13 C -0.547 4.547 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.033 4.033 22 C -0.111 4.111 23 C -0.085 4.085 24 C -0.194 4.194 25 C -0.073 4.073 26 N -0.201 5.201 27 C -0.043 4.043 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.359 13.226 -1.710 13.752 hybrid contribution 1.204 -1.660 1.177 2.364 sum -2.155 11.566 -0.533 11.777 Atomic orbital electron populations 1.21450 0.81393 1.01982 1.00191 1.44803 1.05148 1.06560 1.80459 1.17615 0.90579 0.86242 0.92141 1.20537 0.99234 0.91379 1.11757 1.20599 0.93418 0.96816 0.98787 1.19470 0.93757 0.94693 1.08257 1.20588 0.99391 0.94470 1.01205 1.20644 0.98736 0.91085 0.98552 1.19502 0.92145 0.95393 1.07788 1.20795 0.96334 0.92520 0.92634 1.62170 1.57009 1.04178 1.01419 1.19864 0.94125 0.81573 0.98266 1.21011 1.12926 0.93618 1.27116 0.92368 1.24936 0.95420 0.97720 0.96100 1.69944 1.31060 1.11912 1.40148 0.86595 0.79923 0.80149 0.81463 1.20712 1.21142 1.19780 1.20915 0.95686 0.98092 0.88572 1.20782 0.96582 0.96902 0.96813 1.21564 0.99131 0.94136 0.93639 1.22045 0.99093 1.01572 0.96724 1.22588 0.92558 0.92687 0.99421 1.67634 1.29984 1.13833 1.08698 1.22499 0.93194 0.98162 0.90452 0.91231 0.93574 0.93545 0.74382 0.86767 0.87129 0.92424 0.92404 0.92509 0.86951 0.89170 0.95184 0.94381 0.99077 0.92855 0.94978 0.90525 0.85032 0.85331 0.83526 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 10.13 59.85 0.61 1.89 16 2 N -0.74 -12.34 5.81 -65.39 -0.38 -12.72 16 3 C 0.24 3.94 6.63 -83.79 -0.56 3.39 16 4 C -0.21 -2.99 9.29 -39.38 -0.37 -3.35 16 5 C -0.08 -1.03 9.69 -39.62 -0.38 -1.41 16 6 C -0.16 -2.14 5.88 -104.59 -0.62 -2.75 16 7 C -0.10 -1.05 10.01 36.01 0.36 -0.69 16 8 C -0.07 -1.04 8.62 -39.61 -0.34 -1.38 16 9 C -0.14 -2.37 4.58 -104.42 -0.48 -2.85 16 10 C 0.10 1.93 4.17 -4.98 -0.02 1.91 16 11 N -0.52 -10.33 4.35 -238.97 -1.04 -11.37 16 12 C 0.19 4.46 4.49 -4.98 -0.02 4.43 16 13 C -0.51 -13.09 8.19 -34.44 -0.28 -13.37 16 14 H 0.06 1.45 5.19 -52.49 -0.27 1.18 16 15 C 0.06 1.61 5.45 -17.82 -0.10 1.52 16 16 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.10 1.67 5.00 -4.98 -0.02 1.65 16 22 C -0.11 -1.91 4.92 -104.48 -0.51 -2.42 16 23 C -0.06 -1.00 8.02 -39.28 -0.32 -1.32 16 24 C -0.17 -2.69 10.11 -39.44 -0.40 -3.08 16 25 C 0.08 1.30 11.18 -17.55 -0.20 1.11 16 26 N -0.49 -8.57 10.36 -13.25 -0.14 -8.70 16 27 C 0.11 1.98 10.86 -17.55 -0.19 1.79 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.54 7.47 -51.93 -0.39 0.15 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.42 7.88 4.97 -40.82 -0.20 7.67 16 32 H 0.11 1.48 6.62 -52.49 -0.35 1.13 16 33 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.11 1.51 7.99 -52.49 -0.42 1.09 16 38 H 0.09 1.84 5.86 -51.93 -0.30 1.53 16 39 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 40 H 0.04 0.98 5.58 -51.93 -0.29 0.69 16 41 H -0.01 -0.22 8.13 -51.93 -0.42 -0.65 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.08 1.25 6.58 -51.93 -0.34 0.91 16 45 H 0.13 2.27 7.92 -52.49 -0.42 1.85 16 46 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -28.84 385.31 -11.04 -39.87 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.17 Total: 10.85 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -3.83 Total: -14.94 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.82 Total: -57.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.84 -11.04 -39.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659270193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.823 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds