Wall clock time and date at job start Tue Mar 31 2020 16:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39671 * 119.99757 * 2 1 4 4 C 1.38929 * 120.07662 * 5.76129 * 3 2 1 5 5 C 1.38087 * 119.92098 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.07755 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.92471 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.15249 * 359.78981 * 6 5 4 9 9 C 1.38129 * 120.07267 * 0.46669 * 8 6 5 10 10 C 1.50696 * 120.03753 * 179.79005 * 9 8 6 11 11 N 1.46899 * 109.47192 * 253.43408 * 10 9 8 12 12 C 1.46903 * 111.00195 * 193.87844 * 11 10 9 13 13 C 1.50697 * 109.46957 * 64.47067 * 12 11 10 14 14 H 1.07993 * 120.00439 * 4.58813 * 13 12 11 15 15 C 1.37880 * 119.99915 * 184.58398 * 13 12 11 16 16 N 1.31521 * 120.00082 * 354.89909 * 15 13 12 17 17 Si 1.86799 * 120.00119 * 174.89018 * 15 13 12 18 18 H 1.48507 * 109.46836 * 95.00017 * 17 15 13 19 19 H 1.48504 * 109.47075 * 214.99725 * 17 15 13 20 20 H 1.48491 * 109.47375 * 335.00120 * 17 15 13 21 21 C 1.46898 * 111.00380 * 69.91911 * 11 10 9 22 22 C 1.50698 * 109.47501 * 190.00012 * 21 11 10 23 23 C 1.38663 * 120.41887 * 270.25517 * 22 21 11 24 24 C 1.38640 * 118.41924 * 180.24093 * 23 22 21 25 25 C 1.38224 * 119.16104 * 359.75375 * 24 23 22 26 26 N 1.31859 * 120.76185 * 359.97438 * 25 24 23 27 27 C 1.31882 * 121.72867 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47493 * 184.67145 * 1 2 3 29 29 H 1.09000 * 109.47310 * 304.67188 * 1 2 3 30 30 H 1.08997 * 109.47447 * 64.67403 * 1 2 3 31 31 H 0.97001 * 119.99835 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.03732 * 0.03957 * 4 3 2 33 33 H 1.08006 * 119.95872 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47649 * 89.99876 * 7 6 5 35 35 H 1.09003 * 109.46958 * 209.99762 * 7 6 5 36 36 H 1.08997 * 109.47422 * 329.99696 * 7 6 5 37 37 H 1.07994 * 119.96643 * 180.23466 * 8 6 5 38 38 H 1.09001 * 109.47223 * 133.43395 * 10 9 8 39 39 H 1.09000 * 109.47337 * 13.43066 * 10 9 8 40 40 H 1.08994 * 109.47106 * 184.47047 * 12 11 10 41 41 H 1.09001 * 109.46650 * 304.47057 * 12 11 10 42 42 H 0.96995 * 120.00163 * 179.97438 * 16 15 13 43 43 H 1.09001 * 109.46873 * 70.00163 * 21 11 10 44 44 H 1.09003 * 109.46810 * 310.00594 * 21 11 10 45 45 H 1.07997 * 120.79579 * 359.97009 * 23 22 21 46 46 H 1.07994 * 120.41658 * 179.72967 * 24 23 22 47 47 H 1.07996 * 119.61971 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.62152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2096 0.0000 4 6 1.4755 2.4106 0.1207 5 6 2.1690 3.6047 0.1198 6 6 3.5468 3.6059 -0.0005 7 6 4.3003 4.9110 -0.0006 8 6 4.2349 2.4122 -0.1159 9 6 3.5469 1.2144 -0.1211 10 6 4.2973 -0.0859 -0.2516 11 7 4.0900 -0.6380 -1.5971 12 6 4.5210 -2.0408 -1.6627 13 6 3.6517 -2.8761 -0.7585 14 1 2.8127 -2.4258 -0.2491 15 6 3.9277 -4.2154 -0.5815 16 7 4.8861 -4.7869 -1.2775 17 14 2.9404 -5.2180 0.6471 18 1 1.8263 -5.9040 -0.0555 19 1 3.8223 -6.2297 1.2827 20 1 2.3878 -4.3176 1.6905 21 6 4.7787 0.1723 -2.6105 22 6 4.3488 -0.2709 -3.9852 23 6 5.0409 -1.2730 -4.6482 24 6 4.6127 -1.6448 -5.9133 25 6 3.5148 -1.0123 -6.4656 26 7 2.8774 -0.0667 -5.8036 27 6 3.2559 0.3117 -4.5983 28 1 -0.3634 -1.0243 0.0837 29 1 -0.3634 0.5846 0.8452 30 1 -0.3634 0.4396 -0.9288 31 1 1.9500 -0.8401 0.0004 32 1 0.3997 2.4103 0.2153 33 1 1.6349 4.5388 0.2131 34 1 4.5713 5.1742 1.0219 35 1 5.2041 4.8086 -0.6011 36 1 3.6705 5.6942 -0.4225 37 1 5.3111 2.4165 -0.2059 38 1 3.9304 -0.7934 0.4919 39 1 5.3609 0.0907 -0.0914 40 1 4.4309 -2.4010 -2.6875 41 1 5.5595 -2.1172 -1.3406 42 1 5.0805 -5.7290 -1.1528 43 1 5.8562 0.0437 -2.5077 44 1 4.5232 1.2227 -2.4709 45 1 5.8959 -1.7496 -4.1918 46 1 5.1306 -2.4186 -6.4604 47 1 3.1746 -1.2964 -7.4505 48 1 2.7092 1.0902 -4.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659270193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:46 Heat of formation + Delta-G solvation = 47.269008 kcal Electronic energy + Delta-G solvation = -28053.730786 eV Core-core repulsion = 24493.383466 eV Total energy + Delta-G solvation = -3560.347320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.19406 -40.57363 -38.16785 -36.53236 -34.80855 -33.85500 -32.75246 -32.21142 -31.76674 -29.22671 -28.03691 -27.50505 -25.82479 -25.47678 -24.44392 -23.51674 -22.46350 -21.95343 -20.73478 -18.82861 -18.04006 -17.86525 -17.24557 -17.02564 -16.73801 -16.37410 -16.09107 -15.61343 -15.24187 -14.97965 -14.87657 -14.78932 -14.53735 -14.47032 -14.22183 -14.04392 -13.92200 -13.82650 -13.48003 -13.26465 -13.04469 -12.81775 -12.73274 -12.69672 -12.64949 -12.50576 -12.24568 -11.96325 -11.81940 -11.44723 -11.31300 -10.70585 -10.58911 -10.50323 -10.38591 -9.90601 -9.53815 -8.97466 -8.20204 -7.98630 -6.26852 0.23307 0.38307 0.65270 0.88441 1.37826 1.39354 1.48853 2.37678 2.82267 2.86931 3.06587 3.14058 3.55594 3.61460 3.90029 3.95854 4.06331 4.08963 4.14777 4.17677 4.29236 4.41478 4.46799 4.51617 4.61246 4.62293 4.72008 4.75712 4.80417 4.86589 4.90758 4.91626 4.98335 5.00430 5.04644 5.20569 5.24661 5.29776 5.31144 5.35750 5.43760 5.57144 5.70031 5.72772 5.83352 5.95190 6.07790 6.20332 6.33326 6.61809 6.70918 6.83517 7.03979 7.05902 7.41302 8.90662 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007851 B = 0.005619 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3565.542674 B = 4982.244236 C = 7066.169273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.754 5.754 3 C 0.220 3.780 4 C -0.208 4.208 5 C -0.075 4.075 6 C -0.158 4.158 7 C -0.098 4.098 8 C -0.076 4.076 9 C -0.161 4.161 10 C 0.114 3.886 11 N -0.520 5.520 12 C 0.205 3.795 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.263 1.263 21 C 0.102 3.898 22 C -0.123 4.123 23 C -0.076 4.076 24 C -0.172 4.172 25 C 0.085 3.915 26 N -0.508 5.508 27 C 0.107 3.893 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.402 0.598 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.027 0.973 40 H 0.018 0.982 41 H -0.041 1.041 42 H 0.262 0.738 43 H 0.029 0.971 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.156 0.844 47 H 0.184 0.816 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 14.859 -1.299 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.383 5.383 3 C 0.115 3.885 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.096 4.096 9 C -0.166 4.166 10 C -0.014 4.014 11 N -0.244 5.244 12 C 0.079 3.921 13 C -0.553 4.553 14 H 0.082 0.918 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.779 3.221 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.026 4.026 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.192 4.192 25 C -0.072 4.072 26 N -0.217 5.217 27 C -0.049 4.049 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.238 0.762 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.036 0.964 41 H -0.023 1.023 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.174 0.826 47 H 0.201 0.799 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.761 15.107 -1.796 15.941 hybrid contribution 1.654 -2.145 1.157 2.945 sum -3.106 12.963 -0.639 13.345 Atomic orbital electron populations 1.21582 0.79784 1.02648 1.01106 1.44940 1.06292 1.06047 1.81070 1.17851 0.90665 0.86864 0.93116 1.20775 1.00120 0.91001 1.11134 1.20980 0.93558 0.97549 0.97298 1.19832 0.94183 0.95362 1.06663 1.20632 0.99543 0.93156 1.02165 1.20789 0.99238 0.91070 0.98474 1.19354 0.92467 0.94732 1.10088 1.20635 0.96346 0.93236 0.91143 1.62106 1.57046 1.02497 1.02767 1.19484 0.92051 0.84089 0.96483 1.21379 1.13021 0.93972 1.26888 0.91766 1.25731 0.96479 0.98964 0.97777 1.70069 1.32782 1.12155 1.41798 0.85602 0.78442 0.78595 0.79429 1.20404 1.21115 1.18716 1.20887 0.95265 0.98280 0.88142 1.20801 0.97247 0.97616 0.96822 1.21669 0.99279 0.94483 0.94812 1.22366 0.99075 1.01770 0.95966 1.23193 0.91918 0.91555 1.00509 1.67679 1.30534 1.14699 1.08745 1.22578 0.93122 0.98462 0.90784 0.90942 0.91735 0.93206 0.76164 0.85223 0.84218 0.91344 0.91925 0.90906 0.86251 0.91662 0.95522 0.96364 1.02284 0.92930 0.95291 0.89172 0.86069 0.82623 0.79948 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.41 10.13 127.77 1.29 3.71 16 2 N -0.75 -25.19 5.81 -360.81 -2.10 -27.29 16 3 C 0.22 7.11 6.63 38.22 0.25 7.37 16 4 C -0.21 -5.60 9.29 22.40 0.21 -5.39 16 5 C -0.08 -1.78 9.69 22.25 0.22 -1.56 16 6 C -0.16 -3.85 5.88 -19.84 -0.12 -3.96 16 7 C -0.10 -1.74 10.01 71.24 0.71 -1.03 16 8 C -0.08 -2.17 8.62 22.25 0.19 -1.98 16 9 C -0.16 -5.35 4.58 -19.73 -0.09 -5.44 16 10 C 0.11 4.37 4.17 85.56 0.36 4.73 16 11 N -0.52 -21.35 4.35 -909.96 -3.95 -25.30 16 12 C 0.20 10.28 4.49 85.56 0.38 10.66 16 13 C -0.51 -27.35 8.19 25.60 0.21 -27.14 16 14 H 0.06 3.29 5.19 -2.91 -0.02 3.27 16 15 C 0.01 0.50 5.45 84.65 0.46 0.96 16 16 N -0.93 -53.80 13.29 21.45 0.29 -53.52 16 17 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 C 0.10 3.68 5.00 85.56 0.43 4.11 16 22 C -0.12 -4.39 4.92 -19.77 -0.10 -4.48 16 23 C -0.08 -2.67 8.02 22.47 0.18 -2.49 16 24 C -0.17 -5.14 10.11 22.36 0.23 -4.92 16 25 C 0.09 2.48 11.18 84.69 0.95 3.42 16 26 N -0.51 -17.10 10.36 -195.84 -2.03 -19.13 16 27 C 0.11 3.70 10.86 84.67 0.92 4.62 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.40 7.47 -2.39 -0.02 1.39 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.40 15.56 4.97 -92.71 -0.46 15.10 16 32 H 0.13 3.02 6.62 -2.91 -0.02 3.00 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 36 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 37 H 0.12 3.12 7.99 -2.91 -0.02 3.10 16 38 H 0.07 2.80 5.86 -2.39 -0.01 2.79 16 39 H 0.03 1.01 7.87 -2.39 -0.02 0.99 16 40 H 0.02 0.99 5.58 -2.39 -0.01 0.98 16 41 H -0.04 -2.25 8.13 -2.39 -0.02 -2.27 16 42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 44 H 0.09 2.96 6.58 -2.39 -0.02 2.95 16 45 H 0.12 4.43 7.92 -2.91 -0.02 4.40 16 46 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 48 H 0.15 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -63.26 385.31 1.42 -61.84 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.50 Total: 37.24 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 6.69 Total: -18.80 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -7.80 Total: -125.24 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.26 1.42 -61.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659270193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.114 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds