Wall clock time and date at job start Tue Mar 31 2020 14:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36326 * 108.38064 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41150 * 180.02562 * 6 5 4 8 8 O 1.21629 * 120.00275 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00116 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00235 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47033 * 34.99763 * 10 9 7 12 12 C 1.52995 * 109.47253 * 154.99835 * 10 9 7 13 13 N 1.46498 * 109.47096 * 304.99824 * 12 10 9 14 14 C 1.36945 * 120.00253 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00303 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99937 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46898 * 90.00449 * 18 16 14 20 20 H 1.48498 * 109.47651 * 210.00411 * 18 16 14 21 21 H 1.48497 * 109.47533 * 330.00814 * 18 16 14 22 22 C 1.52998 * 109.46877 * 274.99762 * 10 9 7 23 23 C 1.52995 * 109.47119 * 59.99991 * 22 10 9 24 24 C 1.53001 * 109.46973 * 180.02562 * 22 10 9 25 25 C 1.53000 * 109.47347 * 299.99862 * 22 10 9 26 26 C 1.35909 * 107.17783 * 359.97438 * 6 5 4 27 27 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 29 29 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 32 32 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 33 33 H 0.97002 * 119.99429 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47496 * 64.99747 * 12 10 9 35 35 H 1.08999 * 109.47576 * 184.99772 * 12 10 9 36 36 H 0.96994 * 120.00271 * 359.97438 * 13 12 10 37 37 H 0.97001 * 120.00163 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.47480 * 60.00131 * 23 22 10 39 39 H 1.09010 * 109.46978 * 179.97438 * 23 22 10 40 40 H 1.08997 * 109.47320 * 299.99810 * 23 22 10 41 41 H 1.09004 * 109.47388 * 60.00279 * 24 22 10 42 42 H 1.09010 * 109.47145 * 179.97438 * 24 22 10 43 43 H 1.09002 * 109.46967 * 300.00020 * 24 22 10 44 44 H 1.09001 * 109.47147 * 59.99798 * 25 22 10 45 45 H 1.08994 * 109.47354 * 179.97438 * 25 22 10 46 46 H 1.08997 * 109.46825 * 300.00413 * 25 22 10 47 47 H 1.08007 * 126.45983 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3038 2.4524 -0.0004 7 6 6.3630 3.4771 0.0005 8 8 7.5325 3.1430 0.0007 9 7 6.0358 4.7846 0.0010 10 6 7.0886 5.8032 0.0013 11 1 7.9350 5.4510 -0.5884 12 6 6.5461 7.0976 -0.6078 13 7 6.0021 6.8202 -1.9394 14 6 5.4570 7.8340 -2.6813 15 1 5.4285 8.8382 -2.2848 16 6 4.9420 7.5713 -3.9432 17 7 4.9772 6.3476 -4.4266 18 14 4.1978 8.9541 -4.9548 19 1 5.2544 9.5812 -5.7888 20 1 3.1331 8.4070 -5.8336 21 1 3.6144 9.9735 -4.0462 22 6 7.5427 6.0669 1.4384 23 6 8.0852 4.7725 2.0474 24 6 8.6418 7.1312 1.4387 25 6 6.3546 6.5612 2.2661 26 6 5.4845 1.1054 -0.0003 27 8 4.2630 0.5428 0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1031 5.0510 0.0005 34 1 5.7580 7.4972 0.0306 35 1 7.3522 7.8267 -0.6893 36 1 6.0280 5.9184 -2.2957 37 1 4.6170 6.1639 -5.3084 38 1 8.9317 4.4203 1.4578 39 1 8.4091 4.9605 3.0712 40 1 7.3019 4.0146 2.0472 41 1 8.2549 8.0533 1.0050 42 1 8.9650 7.3194 2.4626 43 1 9.4883 6.7795 0.8489 44 1 5.5712 5.8033 2.2658 45 1 6.6780 6.7486 3.2899 46 1 5.9681 7.4833 1.8321 47 1 6.4309 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755827492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:43 Heat of formation + Delta-G solvation = -39.842755 kcal Electronic energy + Delta-G solvation = -28682.372264 eV Core-core repulsion = 24675.105480 eV Total energy + Delta-G solvation = -4007.266784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.44474 -39.92973 -39.07207 -37.32974 -34.93786 -34.34231 -33.05365 -32.20442 -30.96579 -29.55919 -27.72803 -27.05207 -26.73588 -24.52479 -23.86847 -23.30419 -22.33841 -21.34858 -20.47191 -19.05598 -18.41314 -17.64049 -17.32553 -16.88714 -16.36481 -15.82134 -15.71760 -15.36103 -15.08979 -14.62214 -13.92511 -13.82636 -13.71694 -13.51750 -13.36191 -13.19444 -13.10006 -13.02121 -12.64066 -12.12420 -12.07774 -11.91288 -11.73377 -11.59523 -11.30829 -11.17060 -11.07624 -10.88354 -10.76713 -10.71890 -10.66224 -10.45565 -10.17490 -9.88227 -9.83565 -9.67559 -8.82934 -8.74283 -8.48087 -6.87082 -5.70489 -2.99916 1.14689 1.82208 2.12288 2.65014 3.42242 3.47562 3.52116 3.53994 3.56390 4.45861 4.46602 4.51427 4.62565 4.77773 4.87014 5.00619 5.03046 5.12240 5.23761 5.34075 5.36060 5.48747 5.61075 5.63880 5.65351 5.73781 5.83419 5.86468 5.95803 5.98892 6.10674 6.15512 6.19568 6.22652 6.37760 6.51893 6.53217 6.56719 6.59432 6.69377 6.80011 7.00795 7.49716 7.74377 7.95823 8.46870 8.51693 9.58722 10.15641 10.50648 11.51830 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007945 B = 0.004390 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.603283 B = 6376.271261 C = 8988.650433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.244 6.244 4 C 0.380 3.620 5 N -0.446 5.446 6 C -0.037 4.037 7 C 0.603 3.397 8 O -0.539 6.539 9 N -0.686 5.686 10 C 0.148 3.852 11 H 0.089 0.911 12 C 0.142 3.858 13 N -0.731 5.731 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.076 4.076 23 C -0.130 4.130 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.007 4.007 27 O -0.229 6.229 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.386 0.614 37 H 0.254 0.746 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -13.320 14.527 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.134 3.866 5 N -0.191 5.191 6 C -0.156 4.156 7 C 0.388 3.612 8 O -0.418 6.418 9 N -0.334 5.334 10 C 0.043 3.957 11 H 0.107 0.893 12 C 0.014 3.986 13 N -0.376 5.376 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.078 4.078 23 C -0.187 4.187 24 C -0.198 4.198 25 C -0.200 4.200 26 C -0.080 4.080 27 O -0.120 6.120 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.171 -12.713 14.468 19.382 hybrid contribution -0.651 -0.354 -0.876 1.147 sum -2.823 -13.066 13.592 19.064 Atomic orbital electron populations 1.21807 0.91326 1.03484 1.04323 1.23027 0.96823 0.79584 1.02898 1.86402 1.09039 1.30524 1.89273 1.23303 0.83411 0.81590 0.98312 1.71187 1.03941 1.21282 1.22713 1.21805 0.90324 0.94070 1.09430 1.16557 0.85999 0.81987 0.76702 1.90807 1.17716 1.81564 1.51681 1.45766 1.11530 1.04464 1.71688 1.21362 0.90754 0.88533 0.95048 0.89319 1.21098 0.96538 0.92901 0.88067 1.42354 1.71768 1.09738 1.13698 1.19196 1.31198 0.89846 0.96932 0.91181 1.24732 1.01914 0.96396 0.97723 1.69676 1.51563 1.18287 1.18267 0.86206 0.78583 0.81257 0.80219 1.21801 1.21864 1.20766 1.20902 0.95799 0.96057 0.95029 1.21892 1.01372 0.96257 0.99201 1.21886 0.97970 0.98579 1.01354 1.21924 0.97603 1.01545 0.98921 1.24888 0.85733 0.92944 1.04387 1.84361 1.16265 1.39272 1.72124 0.91008 0.90815 0.89582 0.90823 0.90971 0.74975 0.95300 0.94605 0.78026 0.93595 0.91908 0.93943 0.93033 0.91856 0.92897 0.92528 0.92756 0.93215 0.91838 0.74936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.41 6.38 37.16 0.24 0.65 16 3 O -0.24 -3.10 10.19 -40.97 -0.42 -3.51 16 4 C 0.38 5.52 8.98 52.22 0.47 5.99 16 5 N -0.45 -7.60 11.10 -11.72 -0.13 -7.73 16 6 C -0.04 -0.60 6.99 -82.99 -0.58 -1.18 16 7 C 0.60 10.60 6.17 -12.54 -0.08 10.52 16 8 O -0.54 -9.97 14.00 5.25 0.07 -9.90 16 9 N -0.69 -12.17 3.64 -54.90 -0.20 -12.37 16 10 C 0.15 2.58 1.69 -67.94 -0.11 2.46 16 11 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 12 C 0.14 2.83 5.10 -4.05 -0.02 2.81 16 13 N -0.73 -18.68 5.43 -59.91 -0.33 -19.01 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 18 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.08 -1.09 0.62 -154.51 -0.10 -1.19 16 23 C -0.13 -1.84 7.00 37.16 0.26 -1.58 16 24 C -0.14 -1.81 8.12 37.16 0.30 -1.51 16 25 C -0.14 -1.91 7.97 37.16 0.30 -1.62 16 26 C -0.01 -0.09 11.93 29.90 0.36 0.26 16 27 O -0.23 -2.87 10.20 -17.76 -0.18 -3.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.41 7.71 8.33 -40.82 -0.34 7.37 16 34 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 35 H 0.04 0.72 6.71 -51.93 -0.35 0.37 16 36 H 0.39 10.64 7.33 -40.82 -0.30 10.34 16 37 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 39 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.05 0.78 5.77 -51.93 -0.30 0.48 16 41 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 42 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.76 7.60 -51.93 -0.39 0.36 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.87 6.32 -51.93 -0.33 0.54 16 47 H 0.23 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -33.45 382.57 -5.78 -39.23 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.23 Total: 13.13 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 1.17 Total: 7.73 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.07 Total: -67.13 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.53 Total: -16.46 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.45 -5.78 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.616 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds