Wall clock time and date at job start Tue Mar 31 2020 14:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36326 * 108.38064 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41150 * 180.02562 * 6 5 4 8 8 O 1.21629 * 120.00275 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00116 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00235 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47033 * 34.99763 * 10 9 7 12 12 C 1.52995 * 109.47253 * 154.99835 * 10 9 7 13 13 N 1.46498 * 109.47096 * 304.99824 * 12 10 9 14 14 C 1.36945 * 120.00253 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00303 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99937 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46898 * 90.00449 * 18 16 14 20 20 H 1.48498 * 109.47651 * 210.00411 * 18 16 14 21 21 H 1.48497 * 109.47533 * 330.00814 * 18 16 14 22 22 C 1.52998 * 109.46877 * 274.99762 * 10 9 7 23 23 C 1.52995 * 109.47119 * 59.99991 * 22 10 9 24 24 C 1.53001 * 109.46973 * 180.02562 * 22 10 9 25 25 C 1.53000 * 109.47347 * 299.99862 * 22 10 9 26 26 C 1.35909 * 107.17783 * 359.97438 * 6 5 4 27 27 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 29 29 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 32 32 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 33 33 H 0.97002 * 119.99429 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.47496 * 64.99747 * 12 10 9 35 35 H 1.08999 * 109.47576 * 184.99772 * 12 10 9 36 36 H 0.96994 * 120.00271 * 359.97438 * 13 12 10 37 37 H 0.97001 * 120.00163 * 179.97438 * 17 16 14 38 38 H 1.09006 * 109.47480 * 60.00131 * 23 22 10 39 39 H 1.09010 * 109.46978 * 179.97438 * 23 22 10 40 40 H 1.08997 * 109.47320 * 299.99810 * 23 22 10 41 41 H 1.09004 * 109.47388 * 60.00279 * 24 22 10 42 42 H 1.09010 * 109.47145 * 179.97438 * 24 22 10 43 43 H 1.09002 * 109.46967 * 300.00020 * 24 22 10 44 44 H 1.09001 * 109.47147 * 59.99798 * 25 22 10 45 45 H 1.08994 * 109.47354 * 179.97438 * 25 22 10 46 46 H 1.08997 * 109.46825 * 300.00413 * 25 22 10 47 47 H 1.08007 * 126.45983 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3038 2.4524 -0.0004 7 6 6.3630 3.4771 0.0005 8 8 7.5325 3.1430 0.0007 9 7 6.0358 4.7846 0.0010 10 6 7.0886 5.8032 0.0013 11 1 7.9350 5.4510 -0.5884 12 6 6.5461 7.0976 -0.6078 13 7 6.0021 6.8202 -1.9394 14 6 5.4570 7.8340 -2.6813 15 1 5.4285 8.8382 -2.2848 16 6 4.9420 7.5713 -3.9432 17 7 4.9772 6.3476 -4.4266 18 14 4.1978 8.9541 -4.9548 19 1 5.2544 9.5812 -5.7888 20 1 3.1331 8.4070 -5.8336 21 1 3.6144 9.9735 -4.0462 22 6 7.5427 6.0669 1.4384 23 6 8.0852 4.7725 2.0474 24 6 8.6418 7.1312 1.4387 25 6 6.3546 6.5612 2.2661 26 6 5.4845 1.1054 -0.0003 27 8 4.2630 0.5428 0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.1031 5.0510 0.0005 34 1 5.7580 7.4972 0.0306 35 1 7.3522 7.8267 -0.6893 36 1 6.0280 5.9184 -2.2957 37 1 4.6170 6.1639 -5.3084 38 1 8.9317 4.4203 1.4578 39 1 8.4091 4.9605 3.0712 40 1 7.3019 4.0146 2.0472 41 1 8.2549 8.0533 1.0050 42 1 8.9650 7.3194 2.4626 43 1 9.4883 6.7795 0.8489 44 1 5.5712 5.8033 2.2658 45 1 6.6780 6.7486 3.2899 46 1 5.9681 7.4833 1.8321 47 1 6.4309 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755827492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:42 Heat of formation + Delta-G solvation = -66.143313 kcal Electronic energy + Delta-G solvation = -28683.512741 eV Core-core repulsion = 24675.105480 eV Total energy + Delta-G solvation = -4008.407261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.53599 -41.27251 -39.98409 -38.66874 -36.20835 -36.05551 -34.51004 -32.99694 -32.81724 -30.64472 -29.36647 -28.14465 -27.89424 -26.05753 -25.06922 -24.48021 -23.48820 -22.85245 -21.65050 -20.20322 -19.80760 -19.00320 -18.65013 -18.32590 -17.39665 -17.16908 -16.91065 -16.57316 -16.32647 -16.06077 -15.51548 -15.29848 -15.05072 -14.83181 -14.61944 -14.53991 -14.19781 -13.93290 -13.65567 -13.57267 -13.06936 -13.02724 -12.91226 -12.73120 -12.68325 -12.58909 -12.48049 -12.34759 -12.17107 -12.02678 -11.86754 -11.79111 -11.75035 -11.62044 -11.28054 -11.21993 -10.90531 -9.98095 -9.71320 -8.98027 -7.92505 -5.22056 0.04162 0.82780 0.94153 1.47396 1.49485 1.57782 1.68778 2.13520 2.27161 2.56963 3.34833 3.42226 3.66738 3.73504 3.84696 3.91607 3.95540 4.04400 4.10793 4.24773 4.26595 4.34913 4.39500 4.46270 4.64420 4.67700 4.82834 4.84924 4.85487 4.87481 4.90431 4.98580 5.08790 5.10503 5.16234 5.17220 5.26280 5.32817 5.43818 5.51121 5.57398 5.62179 5.65276 6.27669 6.34465 6.61135 7.13335 7.34533 8.08894 8.32300 9.30814 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007945 B = 0.004390 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.603283 B = 6376.271261 C = 8988.650433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.259 6.259 4 C 0.382 3.618 5 N -0.486 5.486 6 C -0.077 4.077 7 C 0.602 3.398 8 O -0.555 6.555 9 N -0.689 5.689 10 C 0.156 3.844 11 H 0.065 0.935 12 C 0.144 3.856 13 N -0.743 5.743 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.267 1.267 22 C -0.070 4.070 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.138 4.138 26 C 0.026 3.974 27 O -0.214 6.214 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.408 0.592 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -13.576 16.000 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.168 6.168 4 C 0.135 3.865 5 N -0.232 5.232 6 C -0.195 4.195 7 C 0.388 3.612 8 O -0.435 6.435 9 N -0.337 5.337 10 C 0.052 3.948 11 H 0.083 0.917 12 C 0.017 3.983 13 N -0.386 5.386 14 C -0.374 4.374 15 H 0.098 0.902 16 C -0.267 4.267 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.215 1.215 20 H -0.225 1.225 21 H -0.192 1.192 22 C -0.072 4.072 23 C -0.179 4.179 24 C -0.196 4.196 25 C -0.195 4.195 26 C -0.047 4.047 27 O -0.105 6.105 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.243 0.757 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.204 0.796 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.281 -12.946 15.987 20.698 hybrid contribution -0.630 -0.357 -1.272 1.463 sum -2.911 -13.303 14.716 20.050 Atomic orbital electron populations 1.21865 0.89798 1.05142 1.03755 1.23459 0.97986 0.77743 1.04161 1.86431 1.07925 1.33433 1.89020 1.23306 0.84213 0.81449 0.97508 1.71060 1.04719 1.23073 1.24366 1.21693 0.89933 0.95032 1.12826 1.16749 0.86291 0.82090 0.76069 1.90781 1.18320 1.81773 1.52601 1.45765 1.11085 1.04846 1.71983 1.21244 0.89667 0.87148 0.96786 0.91680 1.21240 0.96668 0.94541 0.85816 1.42545 1.71966 1.08616 1.15495 1.19643 1.29939 0.90706 0.97137 0.90230 1.25567 1.03281 0.98678 0.99179 1.69853 1.53300 1.20469 1.18396 0.85135 0.77450 0.78602 0.78534 1.21467 1.22527 1.19160 1.20871 0.96710 0.96843 0.92772 1.21790 1.00311 0.95566 1.00206 1.21877 0.97180 0.97661 1.02844 1.21877 0.96809 1.00841 0.99975 1.25561 0.86649 0.91938 1.00532 1.84403 1.15964 1.38455 1.71670 0.91152 0.91793 0.86723 0.90026 0.89216 0.75667 0.94328 0.93850 0.79638 0.94260 0.93281 0.91611 0.94371 0.92173 0.90474 0.92916 0.93723 0.90890 0.92285 0.71408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.59 6.38 71.98 0.46 1.05 16 3 O -0.26 -6.52 10.19 -64.17 -0.65 -7.17 16 4 C 0.38 11.03 8.98 130.43 1.17 12.20 16 5 N -0.49 -16.96 11.10 -419.40 -4.65 -21.61 16 6 C -0.08 -2.51 6.99 40.31 0.28 -2.23 16 7 C 0.60 21.69 6.17 86.65 0.53 22.22 16 8 O -0.55 -20.83 14.00 -4.12 -0.06 -20.89 16 9 N -0.69 -25.24 3.64 -445.85 -1.62 -26.86 16 10 C 0.16 5.53 1.69 44.99 0.08 5.61 16 11 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 12 C 0.14 5.78 5.10 86.38 0.44 6.22 16 13 N -0.74 -38.76 5.43 -343.46 -1.87 -40.63 16 14 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 16 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 18 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.07 -1.95 0.62 -52.18 -0.03 -1.98 16 23 C -0.12 -3.32 7.00 71.98 0.50 -2.81 16 24 C -0.14 -3.33 8.12 71.98 0.58 -2.74 16 25 C -0.14 -3.49 7.97 71.98 0.57 -2.92 16 26 C 0.03 0.62 11.93 67.28 0.80 1.43 16 27 O -0.21 -5.07 10.20 18.89 0.19 -4.88 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.41 15.87 8.33 -92.71 -0.77 15.10 16 34 H 0.04 1.51 6.17 -2.38 -0.01 1.49 16 35 H 0.04 1.71 6.71 -2.39 -0.02 1.69 16 36 H 0.37 21.26 7.33 -92.71 -0.68 20.58 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.05 1.47 7.53 -2.38 -0.02 1.45 16 39 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.04 1.14 5.77 -2.39 -0.01 1.12 16 41 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.21 7.60 -2.39 -0.02 1.20 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.54 6.32 -2.39 -0.02 1.52 16 47 H 0.27 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -73.50 382.57 0.64 -72.86 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -0.45 Total: 42.73 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 7.44 Total: 18.38 kcal Atomic # 7 Polarization: -142.39 SS G_CDS: -7.86 Total: -150.25 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.52 Total: -32.95 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.50 0.64 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755827492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.720 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds