Wall clock time and date at job start Tue Mar 31 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35198 * 126.00736 * 2 1 4 4 C 1.34506 * 107.64168 * 179.97438 * 3 2 1 5 5 C 1.40560 * 108.03508 * 359.96300 * 4 3 2 6 6 N 1.30124 * 108.20704 * 0.06278 * 5 4 3 7 7 C 1.50947 * 123.50112 * 180.12602 * 5 4 3 8 8 C 1.53373 * 108.20551 * 16.65467 * 7 5 4 9 9 C 1.53015 * 109.75459 * 309.33850 * 8 7 5 10 10 C 1.50884 * 128.38212 * 179.80278 * 4 3 2 11 11 H 1.08995 * 109.71870 * 77.04025 * 10 4 3 12 12 N 1.46900 * 109.71440 * 316.43757 * 10 4 3 13 13 C 1.46901 * 110.99898 * 154.88357 * 12 10 4 14 14 H 1.08999 * 109.46955 * 34.18723 * 13 12 10 15 15 C 1.52998 * 109.46977 * 154.18493 * 13 12 10 16 16 C 1.50703 * 109.47260 * 294.99755 * 15 13 12 17 17 H 1.08000 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47206 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46667 * 120.00505 * 20 18 16 23 23 H 1.48492 * 109.47613 * 240.00568 * 20 18 16 24 24 C 1.50702 * 109.47442 * 274.18325 * 13 12 10 25 25 C 1.38244 * 119.99739 * 314.20821 * 24 13 12 26 26 C 1.38236 * 119.99614 * 179.78678 * 25 24 13 27 27 C 1.38236 * 119.99791 * 0.45971 * 26 25 24 28 28 C 1.38236 * 120.00222 * 359.77482 * 27 26 25 29 29 C 1.38228 * 120.00120 * 134.47846 * 24 13 12 30 30 H 1.09002 * 109.47222 * 269.98128 * 1 2 3 31 31 H 1.08997 * 109.46939 * 29.97688 * 1 2 3 32 32 H 1.08998 * 109.47610 * 149.97729 * 1 2 3 33 33 H 1.08004 * 126.19022 * 0.05981 * 3 2 1 34 34 H 1.09007 * 109.70938 * 256.98089 * 7 5 4 35 35 H 1.09000 * 109.71794 * 136.33800 * 7 5 4 36 36 H 1.09004 * 109.41782 * 189.25586 * 8 7 5 37 37 H 1.08998 * 109.37436 * 69.40569 * 8 7 5 38 38 H 1.08997 * 109.43528 * 311.62750 * 9 8 7 39 39 H 1.09006 * 109.42557 * 191.78058 * 9 8 7 40 40 H 1.00903 * 111.00187 * 278.83997 * 12 10 4 41 41 H 1.08995 * 109.47523 * 54.99795 * 15 13 12 42 42 H 1.09006 * 109.47152 * 175.00292 * 15 13 12 43 43 H 0.96991 * 120.00220 * 179.97438 * 19 18 16 44 44 H 1.08000 * 119.99655 * 359.97438 * 25 24 13 45 45 H 1.07997 * 119.99869 * 180.25235 * 26 25 24 46 46 H 1.08004 * 119.99232 * 179.79149 * 27 26 25 47 47 H 1.08000 * 119.99710 * 179.97438 * 28 27 26 48 48 H 1.07997 * 119.99967 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2598 1.0937 0.0000 4 6 3.5363 0.6699 0.0006 5 6 3.5282 -0.7357 0.0018 6 7 2.2898 -1.1351 0.0006 7 6 4.7821 -1.5761 0.0055 8 6 5.9563 -0.6830 0.4251 9 6 5.9640 0.5922 -0.4206 10 6 4.7981 1.4972 -0.0033 11 1 4.9802 1.8948 0.9951 12 7 4.6623 2.6036 -0.9601 13 6 5.5383 3.7252 -0.5957 14 1 6.4567 3.3399 -0.1529 15 6 5.8769 4.5356 -1.8484 16 6 6.6887 3.6861 -2.7921 17 1 6.9377 2.6697 -2.5252 18 6 7.1125 4.2061 -3.9967 19 7 6.8088 5.4437 -4.3219 20 14 8.1193 3.1534 -5.1660 21 1 8.3244 1.8088 -4.5698 22 1 7.3968 3.0174 -6.4563 23 1 9.4367 3.7967 -5.4019 24 6 4.8334 4.6102 0.3998 25 6 3.5177 4.9776 0.1879 26 6 2.8698 5.7858 1.1033 27 6 3.5406 6.2344 2.2257 28 6 4.8578 5.8710 2.4350 29 6 5.5043 5.0592 1.5219 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9296 2.1220 0.0009 34 1 4.9611 -1.9737 -0.9935 35 1 4.6726 -2.3968 0.7144 36 1 6.8922 -1.2218 0.2771 37 1 5.8521 -0.4196 1.4776 38 1 5.8605 0.3298 -1.4734 39 1 6.9053 1.1211 -0.2703 40 1 4.8468 2.2919 -1.9019 41 1 4.9553 4.8460 -2.3406 42 1 6.4529 5.4170 -1.5663 43 1 7.1073 5.8097 -5.1691 44 1 2.9951 4.6306 -0.6912 45 1 1.8407 6.0695 0.9399 46 1 3.0354 6.8686 2.9391 47 1 5.3819 6.2219 3.3117 48 1 6.5334 4.7755 1.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358964708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:42 Heat of formation + Delta-G solvation = 88.659797 kcal Electronic energy + Delta-G solvation = -27994.284865 eV Core-core repulsion = 24435.732385 eV Total energy + Delta-G solvation = -3558.552481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20722 -38.97202 -37.18768 -35.19249 -32.93569 -32.27307 -31.57985 -30.40990 -29.65967 -28.52344 -27.41820 -26.35871 -24.43380 -22.44388 -22.06484 -21.83449 -21.60050 -20.23704 -19.57260 -18.57254 -16.66255 -16.30745 -16.05199 -15.49760 -15.02640 -14.93313 -14.72979 -14.55226 -14.37552 -14.01152 -13.64702 -13.19842 -13.04379 -12.90964 -12.73428 -12.60422 -12.53906 -12.31102 -12.06654 -12.04224 -11.50078 -11.37970 -11.09412 -11.04166 -10.84715 -10.78421 -10.66005 -10.61459 -10.43584 -10.31863 -9.92498 -9.53462 -9.16598 -8.99839 -8.45910 -8.40097 -8.13938 -7.98101 -7.66336 -6.05071 -4.08557 1.86660 1.91680 2.15639 2.67458 3.03382 3.27727 3.36339 3.38569 4.29718 4.42058 4.49229 4.87753 4.97305 5.02222 5.11935 5.15294 5.24606 5.33012 5.33433 5.34585 5.38357 5.45224 5.55485 5.61425 5.69039 5.71239 5.83036 5.89425 5.99973 6.04157 6.05346 6.12862 6.25674 6.29099 6.39018 6.47539 6.51489 6.58570 6.62195 6.75580 6.91338 6.92178 6.97165 7.23370 7.27597 7.48286 7.55103 7.61506 7.93633 7.95429 8.03797 8.26631 8.33001 8.97512 9.56063 11.05574 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007829 B = 0.005282 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.362036 B = 5300.156200 C = 7418.367817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.393 5.393 3 C 0.084 3.916 4 C -0.215 4.215 5 C 0.078 3.922 6 N -0.304 5.304 7 C -0.036 4.036 8 C -0.110 4.110 9 C -0.146 4.146 10 C 0.169 3.831 11 H 0.074 0.926 12 N -0.672 5.672 13 C 0.127 3.873 14 H 0.042 0.958 15 C 0.028 3.972 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.049 4.049 25 C -0.088 4.088 26 C -0.131 4.131 27 C -0.138 4.138 28 C -0.127 4.127 29 C -0.124 4.124 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.360 0.640 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -7.372 11.996 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.176 5.176 3 C -0.060 4.060 4 C -0.227 4.227 5 C -0.090 4.090 6 N -0.125 5.125 7 C -0.075 4.075 8 C -0.149 4.149 9 C -0.186 4.186 10 C 0.057 3.943 11 H 0.092 0.908 12 N -0.305 5.305 13 C 0.018 3.982 14 H 0.060 0.940 15 C -0.009 4.009 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.050 4.050 25 C -0.106 4.106 26 C -0.149 4.149 27 C -0.156 4.156 28 C -0.145 4.145 29 C -0.143 4.143 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.182 0.818 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.193 -7.944 12.129 17.723 hybrid contribution 1.796 0.052 -1.007 2.060 sum -8.397 -7.892 11.122 16.015 Atomic orbital electron populations 1.21715 0.74883 1.04066 1.02691 1.48429 1.06058 1.03677 1.59469 1.21983 0.90644 0.92914 1.00473 1.20000 0.94757 0.92658 1.15278 1.22339 0.93091 0.94127 0.99459 1.76923 1.01301 1.08360 1.25900 1.20092 0.88838 0.96221 1.02340 1.21504 0.97069 0.96154 1.00163 1.22315 0.99716 0.96129 1.00401 1.19829 0.88812 0.89180 0.96457 0.90801 1.60512 1.56438 1.06907 1.06612 1.20648 0.91176 0.90460 0.95952 0.94001 1.19256 0.97135 0.94899 0.89597 1.21177 1.33753 0.98897 1.02242 0.92616 1.24963 0.96099 0.94871 0.98005 1.69968 1.45854 1.14072 1.22912 0.86607 0.80052 0.80635 0.81133 1.19720 1.21056 1.21107 1.20223 0.94156 0.96482 0.94115 1.21004 0.94611 0.96317 0.98686 1.21103 0.99535 0.99043 0.95199 1.20955 0.95123 1.01368 0.98201 1.20968 0.95045 0.99222 0.99292 1.21055 0.99634 0.98986 0.94608 0.91436 0.89698 0.89858 0.80897 0.90151 0.90607 0.91436 0.91818 0.91342 0.91347 0.81794 0.95446 0.96008 0.93002 0.85648 0.87024 0.87215 0.87039 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.47 59.84 0.69 1.66 16 2 N -0.39 -5.43 4.02 -68.31 -0.27 -5.71 16 3 C 0.08 1.21 11.28 -17.39 -0.20 1.01 16 4 C -0.22 -3.32 5.59 -104.98 -0.59 -3.91 16 5 C 0.08 1.19 7.10 -82.32 -0.58 0.61 16 6 N -0.30 -4.80 12.56 33.76 0.42 -4.38 16 7 C -0.04 -0.45 6.31 -27.57 -0.17 -0.62 16 8 C -0.11 -1.33 5.86 -26.53 -0.16 -1.49 16 9 C -0.15 -2.15 5.17 -26.52 -0.14 -2.29 16 10 C 0.17 2.63 2.60 -68.58 -0.18 2.45 16 11 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 12 N -0.67 -11.82 5.41 -101.87 -0.55 -12.37 16 13 C 0.13 2.44 2.01 -68.86 -0.14 2.30 16 14 H 0.04 0.82 7.14 -51.93 -0.37 0.45 16 15 C 0.03 0.68 4.48 -27.88 -0.13 0.56 16 16 C -0.52 -13.55 8.11 -34.44 -0.28 -13.83 16 17 H 0.06 1.40 7.50 -52.49 -0.39 1.00 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 20 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.05 -0.87 4.66 -104.62 -0.49 -1.35 16 25 C -0.09 -1.46 9.28 -39.58 -0.37 -1.83 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 29 C -0.12 -2.02 9.67 -39.59 -0.38 -2.40 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.17 2.27 8.06 -52.48 -0.42 1.84 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 39 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 40 H 0.36 7.09 6.82 -39.29 -0.27 6.82 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.13 2.12 7.90 -52.49 -0.41 1.71 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 47 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.11 1.74 8.00 -52.49 -0.42 1.32 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -30.33 389.74 -10.91 -41.25 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.70 Total: 8.85 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -4.40 Total: -24.38 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.33 Total: -47.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.33 -10.91 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358964708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.909 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds