Wall clock time and date at job start Tue Mar 31 2020 14:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35198 * 126.00736 * 2 1 4 4 C 1.34506 * 107.64168 * 179.97438 * 3 2 1 5 5 C 1.40560 * 108.03508 * 359.96300 * 4 3 2 6 6 N 1.30124 * 108.20704 * 0.06278 * 5 4 3 7 7 C 1.50947 * 123.50112 * 180.12602 * 5 4 3 8 8 C 1.53373 * 108.20551 * 16.65467 * 7 5 4 9 9 C 1.53015 * 109.75459 * 309.33850 * 8 7 5 10 10 C 1.50884 * 128.38212 * 179.80278 * 4 3 2 11 11 H 1.08995 * 109.71870 * 77.04025 * 10 4 3 12 12 N 1.46900 * 109.71440 * 316.43757 * 10 4 3 13 13 C 1.46901 * 110.99898 * 154.88357 * 12 10 4 14 14 H 1.08999 * 109.46955 * 34.18723 * 13 12 10 15 15 C 1.52998 * 109.46977 * 154.18493 * 13 12 10 16 16 C 1.50703 * 109.47260 * 294.99755 * 15 13 12 17 17 H 1.08000 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47206 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46667 * 120.00505 * 20 18 16 23 23 H 1.48492 * 109.47613 * 240.00568 * 20 18 16 24 24 C 1.50702 * 109.47442 * 274.18325 * 13 12 10 25 25 C 1.38244 * 119.99739 * 314.20821 * 24 13 12 26 26 C 1.38236 * 119.99614 * 179.78678 * 25 24 13 27 27 C 1.38236 * 119.99791 * 0.45971 * 26 25 24 28 28 C 1.38236 * 120.00222 * 359.77482 * 27 26 25 29 29 C 1.38228 * 120.00120 * 134.47846 * 24 13 12 30 30 H 1.09002 * 109.47222 * 269.98128 * 1 2 3 31 31 H 1.08997 * 109.46939 * 29.97688 * 1 2 3 32 32 H 1.08998 * 109.47610 * 149.97729 * 1 2 3 33 33 H 1.08004 * 126.19022 * 0.05981 * 3 2 1 34 34 H 1.09007 * 109.70938 * 256.98089 * 7 5 4 35 35 H 1.09000 * 109.71794 * 136.33800 * 7 5 4 36 36 H 1.09004 * 109.41782 * 189.25586 * 8 7 5 37 37 H 1.08998 * 109.37436 * 69.40569 * 8 7 5 38 38 H 1.08997 * 109.43528 * 311.62750 * 9 8 7 39 39 H 1.09006 * 109.42557 * 191.78058 * 9 8 7 40 40 H 1.00903 * 111.00187 * 278.83997 * 12 10 4 41 41 H 1.08995 * 109.47523 * 54.99795 * 15 13 12 42 42 H 1.09006 * 109.47152 * 175.00292 * 15 13 12 43 43 H 0.96991 * 120.00220 * 179.97438 * 19 18 16 44 44 H 1.08000 * 119.99655 * 359.97438 * 25 24 13 45 45 H 1.07997 * 119.99869 * 180.25235 * 26 25 24 46 46 H 1.08004 * 119.99232 * 179.79149 * 27 26 25 47 47 H 1.08000 * 119.99710 * 179.97438 * 28 27 26 48 48 H 1.07997 * 119.99967 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2598 1.0937 0.0000 4 6 3.5363 0.6699 0.0006 5 6 3.5282 -0.7357 0.0018 6 7 2.2898 -1.1351 0.0006 7 6 4.7821 -1.5761 0.0055 8 6 5.9563 -0.6830 0.4251 9 6 5.9640 0.5922 -0.4206 10 6 4.7981 1.4972 -0.0033 11 1 4.9802 1.8948 0.9951 12 7 4.6623 2.6036 -0.9601 13 6 5.5383 3.7252 -0.5957 14 1 6.4567 3.3399 -0.1529 15 6 5.8769 4.5356 -1.8484 16 6 6.6887 3.6861 -2.7921 17 1 6.9377 2.6697 -2.5252 18 6 7.1125 4.2061 -3.9967 19 7 6.8088 5.4437 -4.3219 20 14 8.1193 3.1534 -5.1660 21 1 8.3244 1.8088 -4.5698 22 1 7.3968 3.0174 -6.4563 23 1 9.4367 3.7967 -5.4019 24 6 4.8334 4.6102 0.3998 25 6 3.5177 4.9776 0.1879 26 6 2.8698 5.7858 1.1033 27 6 3.5406 6.2344 2.2257 28 6 4.8578 5.8710 2.4350 29 6 5.5043 5.0592 1.5219 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9296 2.1220 0.0009 34 1 4.9611 -1.9737 -0.9935 35 1 4.6726 -2.3968 0.7144 36 1 6.8922 -1.2218 0.2771 37 1 5.8521 -0.4196 1.4776 38 1 5.8605 0.3298 -1.4734 39 1 6.9053 1.1211 -0.2703 40 1 4.8468 2.2919 -1.9019 41 1 4.9553 4.8460 -2.3406 42 1 6.4529 5.4170 -1.5663 43 1 7.1073 5.8097 -5.1691 44 1 2.9951 4.6306 -0.6912 45 1 1.8407 6.0695 0.9399 46 1 3.0354 6.8686 2.9391 47 1 5.3819 6.2219 3.3117 48 1 6.5334 4.7755 1.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358964708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:41 Heat of formation + Delta-G solvation = 72.887613 kcal Electronic energy + Delta-G solvation = -27994.968798 eV Core-core repulsion = 24435.732385 eV Total energy + Delta-G solvation = -3559.236414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31730 -40.25951 -38.40469 -36.54487 -34.74831 -33.45122 -32.80264 -31.60812 -30.91249 -30.12039 -28.59564 -27.52227 -26.09008 -23.69226 -23.46033 -23.11002 -22.74068 -21.40337 -20.98984 -19.68594 -18.51663 -17.56168 -17.30440 -16.66626 -16.59314 -16.23700 -15.97735 -15.89980 -15.45950 -15.29342 -14.92139 -14.55909 -14.28689 -14.06491 -13.95915 -13.75912 -13.57884 -13.54103 -13.41176 -13.38801 -13.02396 -12.88501 -12.59050 -12.52555 -12.38838 -12.13630 -11.95841 -11.94164 -11.78127 -11.66120 -11.39306 -11.09395 -11.04432 -10.55237 -10.09105 -9.63781 -9.40926 -9.17375 -9.06557 -8.16108 -6.25848 0.64701 0.70306 1.04633 1.39874 1.41961 1.52864 1.72623 1.87291 2.42022 3.07083 3.16867 3.47211 3.57571 3.91964 4.03776 4.10784 4.18513 4.20857 4.22957 4.32905 4.42902 4.45772 4.46734 4.49596 4.62767 4.64581 4.69624 4.74490 4.82604 4.83608 4.89511 4.92797 5.00053 5.04903 5.16010 5.27488 5.28858 5.34764 5.39714 5.43949 5.50158 5.59515 5.73066 5.77170 5.80217 5.86365 5.96968 6.22467 6.25016 6.31699 6.51549 6.69747 6.85850 6.89484 7.42845 8.95402 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007829 B = 0.005282 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.362036 B = 5300.156200 C = 7418.367817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.392 5.392 3 C 0.083 3.917 4 C -0.237 4.237 5 C 0.068 3.932 6 N -0.327 5.327 7 C -0.034 4.034 8 C -0.101 4.101 9 C -0.144 4.144 10 C 0.177 3.823 11 H 0.068 0.932 12 N -0.666 5.666 13 C 0.145 3.855 14 H 0.033 0.967 15 C 0.042 3.958 16 C -0.525 4.525 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.954 3.046 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.074 4.074 25 C -0.103 4.103 26 C -0.130 4.130 27 C -0.133 4.133 28 C -0.126 4.126 29 C -0.139 4.139 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.345 0.655 41 H -0.002 1.002 42 H -0.013 1.013 43 H 0.261 0.739 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.144 0.856 47 H 0.140 0.860 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -8.265 13.581 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.175 5.175 3 C -0.062 4.062 4 C -0.249 4.249 5 C -0.099 4.099 6 N -0.149 5.149 7 C -0.073 4.073 8 C -0.140 4.140 9 C -0.183 4.183 10 C 0.066 3.934 11 H 0.086 0.914 12 N -0.297 5.297 13 C 0.035 3.965 14 H 0.051 0.949 15 C 0.004 3.996 16 C -0.563 4.563 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.571 5.571 20 Si 0.780 3.220 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.074 4.074 25 C -0.121 4.121 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.144 4.144 29 C -0.158 4.158 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.017 0.983 42 H 0.006 0.994 43 H 0.070 0.930 44 H 0.132 0.868 45 H 0.156 0.844 46 H 0.162 0.838 47 H 0.158 0.842 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.974 -8.863 13.740 19.692 hybrid contribution 1.924 0.401 -1.436 2.434 sum -9.051 -8.462 12.303 17.461 Atomic orbital electron populations 1.22086 0.72344 1.05473 1.04284 1.48793 1.07518 1.02893 1.58301 1.22179 0.90733 0.93562 0.99757 1.20045 0.94901 0.93029 1.16880 1.22731 0.93795 0.94270 0.99146 1.76864 1.01758 1.09518 1.26769 1.20183 0.87715 0.96357 1.03078 1.21450 0.98033 0.94809 0.99664 1.22250 0.98661 0.97306 1.00072 1.19730 0.89757 0.88588 0.95333 0.91429 1.60527 1.55714 1.07366 1.06110 1.20267 0.91576 0.90626 0.93989 0.94888 1.19015 0.94901 0.94169 0.91486 1.21527 1.33093 0.99234 1.02440 0.91900 1.25812 0.97381 0.95975 0.99905 1.70104 1.47492 1.15939 1.23543 0.85553 0.78260 0.79384 0.78790 1.18410 1.20916 1.20921 1.20119 0.94941 0.97614 0.94762 1.21007 0.94413 0.97510 0.99179 1.21404 1.00745 0.97932 0.94725 1.21387 0.94888 1.00657 0.98184 1.21320 0.95518 0.98079 0.99513 1.21213 0.99984 0.99746 0.94847 0.89706 0.87627 0.89186 0.79958 0.89786 0.88869 0.89368 0.91385 0.92774 0.92364 0.83482 0.98325 0.99432 0.93019 0.86838 0.84410 0.83792 0.84191 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 11.47 127.77 1.47 3.05 16 2 N -0.39 -10.39 4.02 -370.04 -1.49 -11.88 16 3 C 0.08 2.35 11.28 83.32 0.94 3.29 16 4 C -0.24 -7.28 5.59 -20.09 -0.11 -7.39 16 5 C 0.07 2.04 7.10 43.46 0.31 2.35 16 6 N -0.33 -10.04 12.56 -47.09 -0.59 -10.63 16 7 C -0.03 -0.81 6.31 30.05 0.19 -0.62 16 8 C -0.10 -2.31 5.86 30.72 0.18 -2.13 16 9 C -0.14 -4.25 5.17 30.73 0.16 -4.09 16 10 C 0.18 5.61 2.60 44.36 0.12 5.73 16 11 H 0.07 2.22 7.68 -2.39 -0.02 2.20 16 12 N -0.67 -24.40 5.41 -476.20 -2.57 -26.97 16 13 C 0.15 5.85 2.01 44.17 0.09 5.94 16 14 H 0.03 1.37 7.14 -2.39 -0.02 1.35 16 15 C 0.04 2.13 4.48 29.85 0.13 2.26 16 16 C -0.52 -28.17 8.11 25.60 0.21 -27.96 16 17 H 0.06 3.22 7.50 -2.91 -0.02 3.20 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 20 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C -0.07 -2.67 4.66 -19.86 -0.09 -2.76 16 25 C -0.10 -3.45 9.28 22.27 0.21 -3.25 16 26 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 27 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 28 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 29 C -0.14 -4.52 9.67 22.27 0.22 -4.30 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.18 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.05 1.74 7.90 -2.39 -0.02 1.72 16 39 H 0.06 1.81 7.70 -2.38 -0.02 1.79 16 40 H 0.34 14.24 6.82 -89.69 -0.61 13.63 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H -0.01 -0.73 8.14 -2.38 -0.02 -0.74 16 43 H 0.26 14.80 8.31 -92.72 -0.77 14.02 16 44 H 0.11 3.99 7.90 -2.91 -0.02 3.97 16 45 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 48 H 0.12 3.60 8.00 -2.91 -0.02 3.57 16 Total: -1.00 -67.53 389.74 3.12 -64.40 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.33 Total: 33.54 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 5.14 Total: -38.59 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.37 Total: -104.92 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.53 3.12 -64.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358964708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.291 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds