Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99905 * 2 1 4 4 C 1.34777 * 120.00022 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99591 * 359.97438 * 4 2 1 6 6 C 1.50696 * 120.00090 * 180.02562 * 4 2 1 7 7 C 1.50705 * 109.47119 * 179.97438 * 6 4 2 8 8 O 1.21281 * 119.99910 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99544 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99300 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46835 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.70042 * 299.78253 * 11 10 9 13 13 C 1.52750 * 109.50806 * 179.66187 * 11 10 9 14 14 C 1.53041 * 109.38376 * 185.70385 * 13 11 10 15 15 C 1.53049 * 109.53599 * 61.24272 * 14 13 11 16 16 C 1.53002 * 109.49533 * 178.68693 * 15 14 13 17 17 C 1.52994 * 109.52327 * 58.60127 * 15 14 13 18 18 C 1.53196 * 109.30883 * 298.63513 * 15 14 13 19 19 N 1.46918 * 108.77587 * 54.63466 * 18 15 14 20 20 C 1.36939 * 120.63127 * 126.36780 * 19 18 15 21 21 H 1.07998 * 120.00419 * 229.51257 * 20 19 18 22 22 C 1.38814 * 119.99625 * 49.50702 * 20 19 18 23 23 N 1.31622 * 119.99655 * 188.82906 * 22 20 19 24 24 Si 1.86794 * 120.00384 * 8.55782 * 22 20 19 25 25 H 1.48496 * 109.47222 * 84.40159 * 24 22 20 26 26 H 1.48501 * 109.47347 * 204.40659 * 24 22 20 27 27 H 1.48500 * 109.46875 * 324.40409 * 24 22 20 28 28 H 1.09003 * 109.47242 * 270.00394 * 1 2 3 29 29 H 1.09005 * 109.47158 * 30.00405 * 1 2 3 30 30 H 1.09002 * 109.47146 * 150.00547 * 1 2 3 31 31 H 1.09001 * 109.46815 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46897 * 299.99332 * 3 2 1 33 33 H 1.09000 * 109.47256 * 59.99691 * 3 2 1 34 34 H 1.08998 * 109.47303 * 59.99725 * 6 4 2 35 35 H 1.08996 * 109.47131 * 299.99982 * 6 4 2 36 36 H 0.96998 * 120.00621 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47440 * 59.99974 * 10 9 7 38 38 H 1.08995 * 109.46928 * 299.99379 * 10 9 7 39 39 H 1.08995 * 109.57056 * 65.67057 * 13 11 10 40 40 H 1.09001 * 109.36276 * 305.61142 * 13 11 10 41 41 H 1.08998 * 109.46473 * 301.21963 * 14 13 11 42 42 H 1.09005 * 109.46419 * 181.25643 * 14 13 11 43 43 H 1.09001 * 109.46920 * 179.83607 * 16 15 14 44 44 H 1.09004 * 109.46981 * 299.83284 * 16 15 14 45 45 H 1.08994 * 109.47313 * 59.83602 * 16 15 14 46 46 H 1.08994 * 109.47663 * 300.14568 * 17 15 14 47 47 H 1.09004 * 109.47283 * 60.15145 * 17 15 14 48 48 H 1.09011 * 109.46676 * 180.14622 * 17 15 14 49 49 H 1.09000 * 109.58244 * 294.84867 * 18 15 14 50 50 H 1.09003 * 109.70192 * 174.49585 * 18 15 14 51 51 H 0.96998 * 119.99990 * 179.72648 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0015 6 6 3.6458 -1.1672 0.0011 7 6 4.1482 -2.5881 0.0023 8 8 3.3600 -3.5099 0.0021 9 7 5.4732 -2.8343 0.0024 10 6 5.9615 -4.2156 0.0030 11 6 7.4916 -4.2156 0.0037 12 1 7.8594 -3.7061 -0.8869 13 6 8.0017 -5.6554 0.0127 14 6 9.5253 -5.6536 0.1569 15 6 9.9131 -4.9935 1.4822 16 6 11.4347 -5.0216 1.6405 17 6 9.2650 -5.7537 2.6410 18 6 9.4252 -3.5414 1.4867 19 7 7.9836 -3.5260 1.2041 20 6 7.1142 -2.8859 2.0466 21 1 6.2275 -3.3942 2.3956 22 6 7.3728 -1.5838 2.4523 23 7 6.6376 -1.0292 3.3926 24 14 8.7690 -0.6213 1.6690 25 1 8.2934 0.0036 0.4086 26 1 9.2263 0.4374 2.6046 27 1 9.8972 -1.5397 1.3711 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 3.2691 1.0695 0.0005 32 1 1.9342 1.8402 -0.8901 33 1 1.9341 1.8403 0.8899 34 1 4.0088 -0.6532 0.8911 35 1 4.0095 -0.6536 -0.8888 36 1 6.1036 -2.0970 0.0022 37 1 5.5982 -4.7298 -0.8868 38 1 5.5982 -4.7290 0.8931 39 1 7.7252 -6.1465 -0.9202 40 1 7.5575 -6.1908 0.8519 41 1 9.9676 -5.0969 -0.6692 42 1 9.8928 -6.6797 0.1411 43 1 11.7107 -4.5488 2.5831 44 1 11.7813 -6.0550 1.6372 45 1 11.8960 -4.4809 0.8141 46 1 8.1811 -5.7344 2.5271 47 1 9.6124 -6.7869 2.6373 48 1 9.5397 -5.2813 3.5842 49 1 9.9541 -2.9759 0.7195 50 1 9.6110 -3.0943 2.4634 51 1 6.8207 -0.1207 3.6789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099264621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = -41.260455 kcal Electronic energy + Delta-G solvation = -29980.433524 eV Core-core repulsion = 26108.938359 eV Total energy + Delta-G solvation = -3871.495165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.92441 -39.10845 -38.00616 -35.35789 -34.91331 -33.06219 -32.22630 -30.83610 -30.67512 -27.97332 -27.18042 -26.78020 -25.62443 -25.52079 -23.39539 -22.49909 -20.12678 -20.06161 -18.78588 -18.37073 -17.12887 -16.64892 -16.04330 -15.91541 -15.46165 -15.24677 -14.91699 -14.73680 -14.32388 -14.09394 -13.82650 -13.47020 -13.13679 -13.05563 -12.90643 -12.73834 -12.59280 -12.46330 -12.45473 -12.33184 -11.96155 -11.88152 -11.65830 -11.54692 -11.35017 -11.30995 -11.08355 -10.88230 -10.76190 -10.58560 -10.36020 -9.91392 -9.71528 -9.63622 -9.55690 -9.31788 -8.77572 -8.56558 -8.54989 -8.03931 -6.63440 -6.03163 -3.64583 2.93760 3.06188 3.23288 3.37397 3.40203 3.48424 4.06753 4.43947 4.73197 4.86351 5.07357 5.15414 5.24374 5.27037 5.31511 5.35822 5.37977 5.44753 5.50210 5.61952 5.64368 5.66731 5.75397 5.80985 5.87791 5.88650 6.00093 6.03072 6.08353 6.18922 6.25923 6.32644 6.34404 6.37711 6.41506 6.55834 6.57470 6.60197 6.72839 6.75738 6.89232 6.93826 7.11529 7.36594 7.45388 8.04139 8.42751 8.43209 8.49177 8.90890 9.13144 9.60238 10.09522 11.09572 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.003922 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.502794 B = 7136.750004 C = 8196.575372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.632 5.632 3 C 0.075 3.925 4 C 0.516 3.484 5 O -0.493 6.493 6 C -0.164 4.164 7 C 0.514 3.486 8 O -0.525 6.525 9 N -0.693 5.693 10 C 0.142 3.858 11 C 0.160 3.840 12 H 0.034 0.966 13 C -0.131 4.131 14 C -0.096 4.096 15 C -0.089 4.089 16 C -0.137 4.137 17 C -0.126 4.126 18 C 0.151 3.849 19 N -0.601 5.601 20 C -0.256 4.256 21 H 0.077 0.923 22 C 0.042 3.958 23 N -0.904 5.904 24 Si 0.844 3.156 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.236 1.236 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.406 0.594 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.063 0.937 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 2.175 -8.104 8.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.370 5.370 3 C -0.068 4.068 4 C 0.303 3.697 5 O -0.364 6.364 6 C -0.207 4.207 7 C 0.297 3.703 8 O -0.401 6.401 9 N -0.345 5.345 10 C 0.018 3.982 11 C 0.054 3.946 12 H 0.051 0.949 13 C -0.171 4.171 14 C -0.134 4.134 15 C -0.091 4.091 16 C -0.195 4.195 17 C -0.184 4.184 18 C 0.026 3.974 19 N -0.327 5.327 20 C -0.385 4.385 21 H 0.094 0.906 22 C -0.159 4.159 23 N -0.545 5.545 24 Si 0.673 3.327 25 H -0.214 1.214 26 H -0.229 1.229 27 H -0.161 1.161 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.243 0.757 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.327 1.074 -7.986 8.065 hybrid contribution 1.218 1.428 -0.092 1.879 sum 0.890 2.502 -8.079 8.504 Atomic orbital electron populations 1.21526 0.79561 1.02631 1.01631 1.47785 1.06850 1.06353 1.75981 1.21842 0.97892 0.85441 1.01612 1.20207 0.89560 0.83245 0.76728 1.90820 1.69434 1.30087 1.46067 1.21607 0.93851 0.98938 1.06324 1.19683 0.82906 0.89893 0.77798 1.90771 1.54932 1.45339 1.49014 1.45784 1.06011 1.09248 1.73414 1.21143 0.93152 0.83248 1.00652 1.20754 0.91683 0.91901 0.90236 0.94858 1.21922 0.95953 0.98057 1.01139 1.21415 0.95805 0.99256 0.96895 1.21125 0.93981 0.98770 0.95199 1.21810 0.95892 1.00653 1.01157 1.21719 1.02057 0.97451 0.97139 1.21722 0.85086 0.91592 0.98991 1.44326 1.02211 1.62492 1.23633 1.18680 1.04913 0.93537 1.21360 0.90561 1.25739 0.96593 0.96406 0.97192 1.69806 1.40339 1.14844 1.29475 0.87697 0.85450 0.80583 0.78946 1.21362 1.22850 1.16110 0.93038 0.91667 0.90687 0.89937 0.92329 0.92080 0.85527 0.87099 0.75740 0.92884 0.91594 0.92731 0.91304 0.92877 0.93178 0.93007 0.93440 0.93338 0.91234 0.94650 0.93456 0.95305 0.91815 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.48 59.85 0.63 1.66 16 2 N -0.63 -8.58 3.27 -189.51 -0.62 -9.20 16 3 C 0.08 0.73 10.60 59.85 0.63 1.37 16 4 C 0.52 9.15 7.67 -10.99 -0.08 9.07 16 5 O -0.49 -11.00 13.76 -18.96 -0.26 -11.26 16 6 C -0.16 -2.71 4.50 -29.03 -0.13 -2.84 16 7 C 0.51 10.55 7.82 -10.98 -0.09 10.47 16 8 O -0.52 -12.86 14.18 -18.96 -0.27 -13.13 16 9 N -0.69 -13.50 4.13 -60.29 -0.25 -13.75 16 10 C 0.14 2.69 4.49 -4.03 -0.02 2.67 16 11 C 0.16 2.84 3.00 -67.82 -0.20 2.64 16 12 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.13 -2.02 5.00 -26.84 -0.13 -2.15 16 14 C -0.10 -1.40 4.71 -26.68 -0.13 -1.52 16 15 C -0.09 -1.42 0.77 -154.38 -0.12 -1.54 16 16 C -0.14 -1.89 8.48 37.16 0.32 -1.58 16 17 C -0.13 -2.09 7.99 37.15 0.30 -1.79 16 18 C 0.15 2.89 2.71 -3.71 -0.01 2.88 16 19 N -0.60 -12.22 1.85 -165.03 -0.31 -12.52 16 20 C -0.26 -6.14 6.60 -15.06 -0.10 -6.24 16 21 H 0.08 2.15 7.09 -52.49 -0.37 1.77 16 22 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 23 N -0.90 -24.79 13.97 55.49 0.78 -24.02 16 24 Si 0.84 18.75 26.62 -169.99 -4.53 14.22 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.24 -4.90 3.87 56.52 0.22 -4.68 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.07 0.97 7.42 -51.93 -0.39 0.59 16 31 H 0.08 0.78 5.77 -51.93 -0.30 0.48 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.13 2.08 7.79 -51.93 -0.40 1.68 16 35 H 0.11 1.41 7.79 -51.93 -0.40 1.00 16 36 H 0.41 7.89 7.33 -40.82 -0.30 7.59 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.42 7.46 -51.93 -0.39 1.03 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 49 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 50 H 0.06 1.35 6.49 -51.93 -0.34 1.01 16 51 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -32.26 384.01 -7.99 -40.25 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -9.09 Total: 9.59 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 0.77 Total: 14.03 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.40 Total: -59.49 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.53 Total: -24.39 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.53 Total: 14.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.26 -7.99 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099264621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.008 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds