Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 C 1.50703 * 109.46912 * 60.00217 * 5 2 1 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 2 9 9 C 1.47429 * 125.64683 * 0.02562 * 8 6 5 10 10 C 1.54905 * 104.83158 * 155.83988 * 9 8 6 11 11 C 1.55155 * 101.58269 * 37.00809 * 10 9 8 12 12 C 1.47014 * 125.64925 * 179.71903 * 8 6 5 13 13 H 1.09006 * 109.88145 * 300.50482 * 12 8 6 14 14 C 1.52998 * 109.88728 * 61.67606 * 12 8 6 15 15 N 1.46899 * 109.46664 * 304.99935 * 14 12 8 16 16 C 1.46904 * 110.99773 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.46900 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00236 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99880 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00025 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99935 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99833 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99806 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99999 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47147 * 90.00132 * 24 22 20 26 26 H 1.48511 * 109.46823 * 209.99875 * 24 22 20 27 27 H 1.48499 * 109.47488 * 329.99656 * 24 22 20 28 28 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 29 29 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 33 33 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 34 34 H 1.09000 * 109.46986 * 299.99746 * 4 2 1 35 35 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 36 36 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 38 38 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 39 39 H 1.09004 * 110.36923 * 274.67953 * 9 8 6 40 40 H 1.08999 * 110.36390 * 36.99658 * 9 8 6 41 41 H 1.08999 * 111.00687 * 155.08799 * 10 9 8 42 42 H 1.09001 * 111.00391 * 278.93226 * 10 9 8 43 43 H 1.09000 * 110.71639 * 82.86520 * 11 10 9 44 44 H 1.09001 * 110.71817 * 205.95609 * 11 10 9 45 45 H 1.08996 * 109.47376 * 64.99847 * 14 12 8 46 46 H 1.09001 * 109.47130 * 185.00224 * 14 12 8 47 47 H 1.00899 * 111.00597 * 303.95252 * 15 14 12 48 48 H 1.08999 * 109.47151 * 299.99659 * 16 15 14 49 49 H 1.08996 * 109.47286 * 60.00484 * 16 15 14 50 50 H 0.96998 * 120.00205 * 359.97438 * 19 17 16 51 51 H 0.97001 * 120.00439 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1421 1.2492 7 8 0.8401 -2.5386 0.3398 8 7 1.8629 -2.9719 2.2602 9 6 2.6977 -2.6223 3.4240 10 6 2.2724 -3.6190 4.5309 11 6 2.0286 -4.9121 3.7088 12 6 1.4386 -4.3736 2.3884 13 1 0.3504 -4.4305 2.4161 14 6 1.9756 -5.1897 1.2109 15 7 1.5505 -4.5676 -0.0501 16 6 2.0495 -5.3255 -1.2054 17 6 1.5950 -4.6584 -2.4780 18 8 0.9214 -3.6510 -2.4276 19 7 1.9363 -5.1817 -3.6723 20 6 1.5225 -4.5752 -4.8300 21 1 0.9233 -3.6777 -4.7851 22 6 1.8748 -5.1145 -6.0612 23 7 1.4785 -4.5328 -7.1709 24 14 2.9116 -6.6663 -6.1388 25 1 2.0225 -7.8556 -6.1516 26 1 3.7348 -6.6502 -7.3748 27 1 3.8021 -6.7266 -4.9519 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1300 -0.7215 -1.2490 37 1 3.1300 -0.7208 1.2495 38 1 1.6766 -0.2074 2.1392 39 1 3.7537 -2.7487 3.1851 40 1 2.4993 -1.5979 3.7391 41 1 3.0731 -3.7623 5.2564 42 1 1.3567 -3.2899 5.0221 43 1 2.9665 -5.4380 3.5303 44 1 1.3141 -5.5615 4.2145 45 1 3.0644 -5.2166 1.2539 46 1 1.5846 -6.2057 1.2647 47 1 0.5467 -4.4722 -0.0861 48 1 3.1388 -5.3528 -1.1790 49 1 1.6594 -6.3426 -1.1687 50 1 2.4747 -5.9875 -3.7126 51 1 1.7241 -4.9094 -8.0304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = -49.868573 kcal Electronic energy + Delta-G solvation = -30020.869662 eV Core-core repulsion = 26149.001221 eV Total energy + Delta-G solvation = -3871.868441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.25993 -38.24767 -38.01507 -35.70268 -35.01505 -33.66545 -31.75710 -31.49295 -30.29133 -27.89751 -26.88471 -26.85510 -26.56056 -24.60527 -23.26357 -22.10352 -21.34953 -19.29484 -19.06370 -18.24389 -18.04720 -16.97413 -16.57100 -15.85414 -15.28882 -14.89054 -14.72601 -14.46743 -14.27771 -14.00384 -13.91488 -13.71637 -13.60433 -13.04744 -13.02936 -12.97080 -12.74207 -12.36486 -12.15051 -11.98627 -11.80567 -11.72670 -11.57314 -11.53215 -11.37748 -11.27429 -11.11272 -11.01038 -10.98699 -10.72918 -10.50482 -10.40736 -10.33407 -10.22826 -9.85054 -9.39192 -8.76768 -8.48256 -8.19038 -8.00842 -7.57987 -6.17990 -3.67668 3.11197 3.12001 3.14597 3.22149 3.26805 3.96606 4.18572 4.21708 4.32829 4.54221 4.67637 4.95122 4.96036 5.04260 5.09353 5.14053 5.26239 5.29044 5.35147 5.40756 5.49581 5.53380 5.54867 5.59640 5.64893 5.68764 5.74521 5.80561 5.83048 5.86839 5.90810 6.01595 6.09885 6.11760 6.13811 6.20202 6.36812 6.49777 6.56535 6.61961 6.77787 6.93430 7.39290 7.50529 7.74540 7.89942 8.01285 8.31345 8.76912 8.83963 9.11865 9.58825 10.04486 10.95870 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.003956 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.113755 B = 7076.598107 C = 8818.768232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.159 4.159 5 C -0.120 4.120 6 C 0.518 3.482 7 O -0.450 6.450 8 N -0.619 5.619 9 C 0.102 3.898 10 C -0.133 4.133 11 C -0.127 4.127 12 C 0.143 3.857 13 H 0.069 0.931 14 C 0.048 3.952 15 N -0.638 5.638 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.539 6.539 19 N -0.601 5.601 20 C -0.296 4.296 21 H 0.119 0.881 22 C 0.038 3.962 23 N -0.888 5.888 24 Si 0.878 3.122 25 H -0.273 1.273 26 H -0.279 1.279 27 H -0.271 1.271 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.361 0.639 48 H 0.076 0.924 49 H 0.034 0.966 50 H 0.367 0.633 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 1.862 25.553 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.216 4.216 5 C -0.160 4.160 6 C 0.306 3.694 7 O -0.319 6.319 8 N -0.358 5.358 9 C -0.022 4.022 10 C -0.171 4.171 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.087 0.913 14 C -0.083 4.083 15 N -0.275 5.275 16 C -0.090 4.090 17 C 0.239 3.761 18 O -0.418 6.418 19 N -0.242 5.242 20 C -0.425 4.425 21 H 0.136 0.864 22 C -0.164 4.164 23 N -0.529 5.529 24 Si 0.705 3.295 25 H -0.199 1.199 26 H -0.204 1.204 27 H -0.196 1.196 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.185 0.815 48 H 0.094 0.906 49 H 0.052 0.948 50 H 0.199 0.801 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.890 2.897 24.715 25.186 hybrid contribution 0.659 -2.041 -0.178 2.152 sum 4.549 0.856 24.537 24.970 Atomic orbital electron populations 1.22059 0.94339 1.04253 0.99870 1.20259 0.96182 0.93796 0.94658 1.21908 1.00516 0.96119 1.01273 1.22228 0.98897 1.05661 0.94775 1.21682 1.01606 0.93056 0.99676 1.20169 0.82074 0.86611 0.80594 1.90694 1.35032 1.74350 1.31805 1.48479 1.52973 1.11175 1.23139 1.22199 0.95152 0.98901 0.85953 1.22756 1.02058 0.95146 0.97101 1.22648 1.01768 0.97468 0.94616 1.21479 0.98683 0.82184 0.93811 0.91285 1.22442 1.00375 0.94817 0.90681 1.60722 1.20296 1.48327 0.98177 1.21751 1.00431 0.94762 0.92056 1.19760 0.85261 0.87231 0.83893 1.90599 1.40034 1.24929 1.86267 1.42242 1.49566 1.26337 1.06064 1.19420 1.30783 1.10855 0.81437 0.86352 1.25002 0.98134 0.98130 0.95128 1.69625 1.45925 1.39977 0.97389 0.86691 0.80731 0.83847 0.78195 1.19886 1.20405 1.19640 0.94584 0.93307 0.89406 0.93118 0.92533 0.93414 0.86085 0.93766 0.94913 0.90116 0.90412 0.91969 0.91089 0.90180 0.90757 0.90478 0.90324 0.91558 0.95515 0.81451 0.90552 0.94842 0.80062 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.18 37.16 0.30 -1.93 16 2 C -0.05 -0.69 0.77 -154.51 -0.12 -0.81 16 3 C -0.14 -1.69 8.47 37.16 0.31 -1.37 16 4 C -0.16 -2.92 8.18 37.16 0.30 -2.62 16 5 C -0.12 -1.47 3.78 -27.88 -0.11 -1.57 16 6 C 0.52 7.33 6.80 -10.98 -0.07 7.26 16 7 O -0.45 -7.99 7.13 5.56 0.04 -7.95 16 8 N -0.62 -6.98 3.07 -163.02 -0.50 -7.48 16 9 C 0.10 0.79 6.69 -2.53 -0.02 0.77 16 10 C -0.13 -0.79 7.08 -24.59 -0.17 -0.96 16 11 C -0.13 -0.88 6.47 -24.90 -0.16 -1.04 16 12 C 0.14 1.50 3.30 -66.96 -0.22 1.28 16 13 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 14 C 0.05 0.59 5.30 -3.83 -0.02 0.57 16 15 N -0.64 -10.58 2.96 -115.06 -0.34 -10.92 16 16 C 0.04 0.77 6.17 -4.97 -0.03 0.74 16 17 C 0.45 10.71 7.82 -10.98 -0.09 10.62 16 18 O -0.54 -14.57 14.03 5.55 0.08 -14.49 16 19 N -0.60 -14.95 5.09 -10.96 -0.06 -15.00 16 20 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 21 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 22 C 0.04 1.07 5.50 -17.47 -0.10 0.98 16 23 N -0.89 -26.85 13.96 55.50 0.77 -26.07 16 24 Si 0.88 20.26 27.74 -169.99 -4.71 15.55 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -5.75 6.52 56.52 0.37 -5.39 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.55 5.51 -51.93 -0.29 1.26 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.12 2.65 3.98 -51.93 -0.21 2.44 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.48 7.47 -51.93 -0.39 0.09 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.51 7.77 -51.93 -0.40 0.10 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 46 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.36 6.69 6.94 -39.29 -0.27 6.42 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.37 8.16 5.76 -40.82 -0.24 7.93 16 51 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -33.48 388.65 -8.13 -41.61 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -8.94 Total: 15.81 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.33 Total: 3.09 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.12 Total: -59.47 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.12 Total: -22.44 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.71 Total: 15.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.48 -8.13 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.255 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds