Wall clock time and date at job start Tue Mar 31 2020 14:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53121 * 109.52130 * 2 1 4 4 C 1.53041 * 109.27710 * 177.62030 * 3 2 1 5 5 N 1.46845 * 109.52316 * 300.82002 * 4 3 2 6 6 C 1.46904 * 110.99685 * 185.83857 * 5 4 3 7 7 C 1.50704 * 109.46954 * 169.99804 * 6 5 4 8 8 O 1.21279 * 119.99695 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99940 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47250 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51526 * 304.89993 * 11 10 9 13 13 C 1.53301 * 109.51368 * 184.74719 * 11 10 9 14 14 N 1.47156 * 108.38570 * 187.77354 * 13 11 10 15 15 C 1.36937 * 120.98026 * 230.51800 * 14 13 11 16 16 H 1.07997 * 119.99772 * 153.75567 * 15 14 13 17 17 C 1.38808 * 120.00175 * 333.74997 * 15 14 13 18 18 N 1.31613 * 120.00126 * 160.05928 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 340.05789 * 17 15 14 20 20 H 1.48500 * 109.46980 * 91.89562 * 19 17 15 21 21 H 1.48500 * 109.47406 * 211.89735 * 19 17 15 22 22 H 1.48505 * 109.47161 * 331.89959 * 19 17 15 23 23 C 1.47151 * 118.03267 * 50.53428 * 14 13 11 24 24 C 1.53297 * 108.38839 * 309.46479 * 23 14 13 25 25 O 1.42959 * 109.51240 * 65.00368 * 11 10 9 26 26 C 1.46845 * 111.19883 * 61.74206 * 5 4 3 27 27 C 1.53032 * 109.52419 * 298.25436 * 26 5 4 28 28 H 1.08998 * 109.47488 * 60.00422 * 1 2 3 29 29 H 1.09002 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47217 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.52463 * 239.86879 * 2 1 3 32 32 H 1.08998 * 109.50641 * 57.67911 * 3 2 1 33 33 H 1.08995 * 109.53372 * 297.57836 * 3 2 1 34 34 H 1.09000 * 109.46058 * 180.79772 * 4 3 2 35 35 H 1.09008 * 109.45295 * 60.82908 * 4 3 2 36 36 H 1.09006 * 109.47089 * 50.00116 * 6 5 4 37 37 H 1.08993 * 109.47414 * 289.99955 * 6 5 4 38 38 H 0.97002 * 119.99892 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.47035 * 60.00256 * 10 9 7 40 40 H 1.09006 * 109.47218 * 300.00526 * 10 9 7 41 41 H 1.08996 * 109.68234 * 307.49971 * 13 11 10 42 42 H 1.08999 * 109.67641 * 68.04981 * 13 11 10 43 43 H 0.97005 * 120.00487 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.67995 * 189.73969 * 23 14 13 45 45 H 1.09003 * 109.71034 * 69.20690 * 23 14 13 46 46 H 1.08992 * 109.51183 * 292.38319 * 24 23 14 47 47 H 1.09000 * 109.51000 * 172.22354 * 24 23 14 48 48 H 1.08994 * 109.46199 * 58.27545 * 26 5 4 49 49 H 1.09001 * 109.45996 * 178.23903 * 26 5 4 50 50 H 1.09001 * 109.50886 * 299.24122 * 27 26 5 51 51 H 1.08999 * 109.50707 * 179.12166 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4371 0.0600 5 7 4.0115 0.7426 1.2765 6 6 5.4685 0.8375 1.4383 7 6 5.8559 0.3348 2.8052 8 8 5.0022 -0.0627 3.5694 9 7 7.1508 0.3281 3.1787 10 6 7.5273 -0.1599 4.5077 11 6 9.0446 -0.0601 4.6767 12 1 9.5374 -0.5937 3.8640 13 6 9.4522 -0.6793 6.0185 14 7 10.8807 -0.4048 6.2415 15 6 11.7476 -1.4102 6.5776 16 1 12.7961 -1.3230 6.3340 17 6 11.2787 -2.5413 7.2314 18 7 11.9831 -3.6529 7.2107 19 14 9.6478 -2.4859 8.1406 20 1 8.5575 -2.9143 7.2280 21 1 9.7019 -3.3992 9.3103 22 1 9.3876 -1.1000 8.6063 23 6 11.3499 0.9820 6.0931 24 6 10.8498 1.5202 4.7476 25 8 9.4383 1.3141 4.6535 26 6 3.5721 -0.6586 1.2767 27 6 2.0430 -0.7150 1.2531 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8942 -0.5157 -0.8885 32 1 1.6455 1.9698 0.8682 33 1 1.7152 1.9456 -0.9105 34 1 3.9378 2.4634 0.0744 35 1 3.9664 0.9222 -0.8156 36 1 5.7790 1.8770 1.3320 37 1 5.9589 0.2320 0.6761 38 1 7.8334 0.6472 2.5678 39 1 7.2172 -1.1994 4.6143 40 1 7.0365 0.4456 5.2697 41 1 8.8635 -0.2357 6.8214 42 1 9.2851 -1.7560 5.9918 43 1 11.6556 -4.4433 7.6679 44 1 12.4394 1.0053 6.1158 45 1 10.9527 1.5932 6.9035 46 1 11.3498 0.9921 3.9358 47 1 11.0675 2.5860 4.6783 48 1 3.9678 -1.1634 0.3955 49 1 3.9400 -1.1544 2.1750 50 1 1.6468 -0.2224 2.1411 51 1 1.7174 -1.7552 1.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:29 Heat of formation + Delta-G solvation = -55.541862 kcal Electronic energy + Delta-G solvation = -28451.436556 eV Core-core repulsion = 24579.322103 eV Total energy + Delta-G solvation = -3872.114453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.16218 -39.07526 -38.41754 -35.09458 -34.70922 -34.44616 -31.62744 -31.48360 -31.05318 -29.54705 -27.83894 -26.45038 -24.87889 -23.64627 -23.41790 -22.18692 -21.61231 -20.54877 -19.94375 -19.90001 -17.24032 -17.03752 -16.40008 -16.26306 -15.82852 -15.59034 -15.24605 -14.80649 -14.67993 -14.56425 -14.46922 -14.24892 -14.08952 -13.70026 -13.55088 -13.29541 -13.03223 -12.80711 -12.62574 -12.40633 -12.23455 -12.01981 -11.93861 -11.79793 -11.68891 -11.41275 -11.25467 -10.95637 -10.85955 -10.58949 -10.53451 -10.43067 -10.32989 -9.89414 -9.70442 -9.57336 -9.43627 -8.97197 -8.63382 -8.50507 -7.08754 -6.03746 -3.41578 2.68748 3.02106 3.26279 3.44715 3.46854 3.77199 4.02127 4.44377 4.47428 4.52162 4.55173 4.70906 4.73295 4.95693 5.02326 5.03851 5.14836 5.20197 5.22085 5.27602 5.30115 5.37981 5.38177 5.39264 5.46774 5.56397 5.59204 5.72131 5.73836 5.77925 5.79243 5.81143 5.86245 5.94290 5.98643 6.00814 6.08039 6.15167 6.20481 6.39089 6.45293 6.51803 6.66831 6.74229 6.88069 7.54994 7.57444 7.79560 8.21824 8.30310 8.79335 9.60261 9.96135 11.11687 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.002439 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.034661 B =11476.145966 C =12390.658885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.110 4.110 4 C 0.056 3.944 5 N -0.520 5.520 6 C 0.037 3.963 7 C 0.511 3.489 8 O -0.525 6.525 9 N -0.723 5.723 10 C 0.130 3.870 11 C 0.066 3.934 12 H 0.066 0.934 13 C 0.101 3.899 14 N -0.607 5.607 15 C -0.264 4.264 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.112 3.888 24 C 0.048 3.952 25 O -0.385 6.385 26 C 0.049 3.951 27 C -0.108 4.108 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.025 0.975 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 10.566 -17.164 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.072 4.072 5 N -0.245 5.245 6 C -0.094 4.094 7 C 0.296 3.704 8 O -0.401 6.401 9 N -0.375 5.375 10 C 0.006 3.994 11 C 0.006 3.994 12 H 0.084 0.916 13 C -0.025 4.025 14 N -0.331 5.331 15 C -0.392 4.392 16 H 0.106 0.894 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.711 3.289 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.194 1.194 23 C -0.014 4.014 24 C -0.030 4.030 25 O -0.305 6.305 26 C -0.078 4.078 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.044 0.956 49 H 0.114 0.886 50 H 0.092 0.908 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.461 10.468 -16.135 25.977 hybrid contribution 0.197 -0.537 -0.353 0.672 sum -17.264 9.931 -16.488 25.856 Atomic orbital electron populations 1.21804 0.95137 1.01647 1.01710 1.21213 0.95640 0.96202 0.98382 1.21632 0.94321 0.96662 1.02179 1.22120 0.96231 0.98776 0.90066 1.61571 1.09911 1.15495 1.37533 1.21939 0.89902 1.02884 0.94694 1.20460 0.82301 0.78588 0.89069 1.90678 1.49145 1.46416 1.53885 1.45932 1.07934 1.65927 1.17702 1.21402 0.93543 1.00242 0.84247 1.22866 0.92815 0.83874 0.99871 0.91586 1.21927 0.86691 1.00178 0.93717 1.44346 1.03875 1.03637 1.81288 1.18904 0.92220 0.95412 1.32635 0.89380 1.25260 0.97761 0.95855 0.98615 1.69814 1.39631 1.00660 1.44700 0.87020 0.84172 0.77721 0.80027 1.21322 1.22855 1.19429 1.21638 0.98993 0.86146 0.94607 1.23054 0.81334 1.00125 0.98480 1.87816 1.23324 1.24541 1.94787 1.22285 0.96014 0.87945 1.01555 1.21606 0.94645 1.00166 0.98202 0.92883 0.92772 0.92527 0.91744 0.90901 0.91599 0.90654 0.94969 0.87819 0.92037 0.76412 0.90058 0.90640 0.94433 0.89936 0.92584 0.90968 0.95029 0.93317 0.89489 0.95631 0.88625 0.90828 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.20 37.15 0.34 -0.64 16 2 C -0.10 -0.75 2.79 -90.49 -0.25 -1.00 16 3 C -0.11 -0.84 5.38 -26.65 -0.14 -0.98 16 4 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 5 N -0.52 -5.58 4.40 -236.11 -1.04 -6.61 16 6 C 0.04 0.37 5.45 -4.97 -0.03 0.34 16 7 C 0.51 6.86 7.50 -10.98 -0.08 6.78 16 8 O -0.53 -9.07 14.33 5.56 0.08 -8.99 16 9 N -0.72 -9.30 5.50 -60.30 -0.33 -9.64 16 10 C 0.13 2.03 5.34 -4.05 -0.02 2.01 16 11 C 0.07 1.13 2.81 -26.58 -0.07 1.06 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.10 2.18 3.67 -3.53 -0.01 2.16 16 14 N -0.61 -14.17 2.84 -171.82 -0.49 -14.66 16 15 C -0.26 -7.23 10.10 -15.06 -0.15 -7.38 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.02 0.70 5.26 -17.43 -0.09 0.61 16 18 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 19 Si 0.88 22.21 24.28 -169.99 -4.13 18.08 16 20 H -0.29 -6.89 6.58 56.52 0.37 -6.52 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 23 C 0.11 2.14 6.73 -3.53 -0.02 2.11 16 24 C 0.05 0.76 6.99 37.31 0.26 1.02 16 25 O -0.39 -6.48 10.33 -35.23 -0.36 -6.84 16 26 C 0.05 0.54 5.11 -3.84 -0.02 0.52 16 27 C -0.11 -1.04 5.38 -26.65 -0.14 -1.18 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.54 8.02 -51.93 -0.42 0.13 16 35 H 0.03 0.25 8.14 -51.92 -0.42 -0.18 16 36 H 0.10 0.83 7.99 -51.93 -0.41 0.42 16 37 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.83 6.86 -51.93 -0.36 0.47 16 42 H 0.08 1.91 4.61 -51.93 -0.24 1.67 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.10 1.30 5.78 -51.93 -0.30 1.00 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -32.48 387.49 -9.41 -41.89 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -9.29 Total: 1.63 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -0.46 Total: 5.86 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -1.08 Total: -57.47 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.28 Total: -15.83 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.13 Total: 18.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.48 -9.41 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.656 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds