Wall clock time and date at job start Tue Mar 31 2020 14:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53121 * 109.52130 * 2 1 4 4 C 1.53041 * 109.27710 * 177.62030 * 3 2 1 5 5 N 1.46845 * 109.52316 * 300.82002 * 4 3 2 6 6 C 1.46904 * 110.99685 * 185.83857 * 5 4 3 7 7 C 1.50704 * 109.46954 * 169.99804 * 6 5 4 8 8 O 1.21279 * 119.99695 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99940 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47250 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51526 * 304.89993 * 11 10 9 13 13 C 1.53301 * 109.51368 * 184.74719 * 11 10 9 14 14 N 1.47156 * 108.38570 * 187.77354 * 13 11 10 15 15 C 1.36937 * 120.98026 * 230.51800 * 14 13 11 16 16 H 1.07997 * 119.99772 * 153.75567 * 15 14 13 17 17 C 1.38808 * 120.00175 * 333.74997 * 15 14 13 18 18 N 1.31613 * 120.00126 * 160.05928 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 340.05789 * 17 15 14 20 20 H 1.48500 * 109.46980 * 91.89562 * 19 17 15 21 21 H 1.48500 * 109.47406 * 211.89735 * 19 17 15 22 22 H 1.48505 * 109.47161 * 331.89959 * 19 17 15 23 23 C 1.47151 * 118.03267 * 50.53428 * 14 13 11 24 24 C 1.53297 * 108.38839 * 309.46479 * 23 14 13 25 25 O 1.42959 * 109.51240 * 65.00368 * 11 10 9 26 26 C 1.46845 * 111.19883 * 61.74206 * 5 4 3 27 27 C 1.53032 * 109.52419 * 298.25436 * 26 5 4 28 28 H 1.08998 * 109.47488 * 60.00422 * 1 2 3 29 29 H 1.09002 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47217 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.52463 * 239.86879 * 2 1 3 32 32 H 1.08998 * 109.50641 * 57.67911 * 3 2 1 33 33 H 1.08995 * 109.53372 * 297.57836 * 3 2 1 34 34 H 1.09000 * 109.46058 * 180.79772 * 4 3 2 35 35 H 1.09008 * 109.45295 * 60.82908 * 4 3 2 36 36 H 1.09006 * 109.47089 * 50.00116 * 6 5 4 37 37 H 1.08993 * 109.47414 * 289.99955 * 6 5 4 38 38 H 0.97002 * 119.99892 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.47035 * 60.00256 * 10 9 7 40 40 H 1.09006 * 109.47218 * 300.00526 * 10 9 7 41 41 H 1.08996 * 109.68234 * 307.49971 * 13 11 10 42 42 H 1.08999 * 109.67641 * 68.04981 * 13 11 10 43 43 H 0.97005 * 120.00487 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.67995 * 189.73969 * 23 14 13 45 45 H 1.09003 * 109.71034 * 69.20690 * 23 14 13 46 46 H 1.08992 * 109.51183 * 292.38319 * 24 23 14 47 47 H 1.09000 * 109.51000 * 172.22354 * 24 23 14 48 48 H 1.08994 * 109.46199 * 58.27545 * 26 5 4 49 49 H 1.09001 * 109.45996 * 178.23903 * 26 5 4 50 50 H 1.09001 * 109.50886 * 299.24122 * 27 26 5 51 51 H 1.08999 * 109.50707 * 179.12166 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4371 0.0600 5 7 4.0115 0.7426 1.2765 6 6 5.4685 0.8375 1.4383 7 6 5.8559 0.3348 2.8052 8 8 5.0022 -0.0627 3.5694 9 7 7.1508 0.3281 3.1787 10 6 7.5273 -0.1599 4.5077 11 6 9.0446 -0.0601 4.6767 12 1 9.5374 -0.5937 3.8640 13 6 9.4522 -0.6793 6.0185 14 7 10.8807 -0.4048 6.2415 15 6 11.7476 -1.4102 6.5776 16 1 12.7961 -1.3230 6.3340 17 6 11.2787 -2.5413 7.2314 18 7 11.9831 -3.6529 7.2107 19 14 9.6478 -2.4859 8.1406 20 1 8.5575 -2.9143 7.2280 21 1 9.7019 -3.3992 9.3103 22 1 9.3876 -1.1000 8.6063 23 6 11.3499 0.9820 6.0931 24 6 10.8498 1.5202 4.7476 25 8 9.4383 1.3141 4.6535 26 6 3.5721 -0.6586 1.2767 27 6 2.0430 -0.7150 1.2531 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8942 -0.5157 -0.8885 32 1 1.6455 1.9698 0.8682 33 1 1.7152 1.9456 -0.9105 34 1 3.9378 2.4634 0.0744 35 1 3.9664 0.9222 -0.8156 36 1 5.7790 1.8770 1.3320 37 1 5.9589 0.2320 0.6761 38 1 7.8334 0.6472 2.5678 39 1 7.2172 -1.1994 4.6143 40 1 7.0365 0.4456 5.2697 41 1 8.8635 -0.2357 6.8214 42 1 9.2851 -1.7560 5.9918 43 1 11.6556 -4.4433 7.6679 44 1 12.4394 1.0053 6.1158 45 1 10.9527 1.5932 6.9035 46 1 11.3498 0.9921 3.9358 47 1 11.0675 2.5860 4.6783 48 1 3.9678 -1.1634 0.3955 49 1 3.9400 -1.1544 2.1750 50 1 1.6468 -0.2224 2.1411 51 1 1.7174 -1.7552 1.2376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753655607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:28 Heat of formation + Delta-G solvation = -79.904938 kcal Electronic energy + Delta-G solvation = -28452.493018 eV Core-core repulsion = 24579.322103 eV Total energy + Delta-G solvation = -3873.170916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.16199 -40.34282 -39.41892 -36.61294 -35.91520 -35.41229 -33.66598 -32.83543 -31.74171 -30.39484 -29.31532 -27.67997 -26.04208 -25.34856 -24.12344 -23.29445 -22.67417 -21.89190 -21.27607 -20.57035 -19.04495 -18.18619 -17.64502 -17.44591 -17.36267 -16.57741 -16.33395 -16.10683 -15.83992 -15.68652 -15.53172 -15.35098 -15.30991 -15.00330 -14.80158 -14.41413 -14.14596 -14.02877 -13.75202 -13.69249 -13.47096 -13.26904 -12.97428 -12.92928 -12.69382 -12.43101 -12.40870 -12.33187 -12.11717 -12.10951 -11.63986 -11.61462 -11.42308 -11.30194 -11.15750 -11.15313 -10.71546 -10.52710 -10.11322 -9.25022 -9.00727 -8.23426 -5.56558 1.23719 1.36716 1.43650 1.66344 2.01775 2.33738 2.66145 2.93735 3.02428 3.19692 3.74599 3.86530 3.87662 3.89615 3.91964 3.97233 4.09094 4.26112 4.30602 4.33166 4.36441 4.41267 4.42864 4.51489 4.53547 4.55886 4.62747 4.64006 4.67165 4.75438 4.82003 4.85870 4.88864 4.95192 4.97843 5.04033 5.15564 5.16268 5.24548 5.28012 5.34559 5.39959 5.55254 5.75157 5.99650 6.05196 6.17395 6.18185 6.59996 6.78299 7.29254 7.50508 7.91436 8.95749 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.002439 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.034661 B =11476.145966 C =12390.658885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.541 5.541 6 C 0.043 3.957 7 C 0.508 3.492 8 O -0.569 6.569 9 N -0.712 5.712 10 C 0.138 3.862 11 C 0.083 3.917 12 H 0.072 0.928 13 C 0.095 3.905 14 N -0.622 5.622 15 C -0.249 4.249 16 H 0.063 0.937 17 C -0.030 4.030 18 N -0.951 5.951 19 Si 0.936 3.064 20 H -0.272 1.272 21 H -0.309 1.309 22 H -0.266 1.266 23 C 0.103 3.897 24 C 0.055 3.945 25 O -0.382 6.382 26 C 0.052 3.948 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.062 0.938 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.128 0.872 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.720 12.862 -19.625 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.147 4.147 4 C -0.071 4.071 5 N -0.266 5.266 6 C -0.087 4.087 7 C 0.295 3.705 8 O -0.448 6.448 9 N -0.366 5.366 10 C 0.013 3.987 11 C 0.023 3.977 12 H 0.089 0.911 13 C -0.031 4.031 14 N -0.348 5.348 15 C -0.378 4.378 16 H 0.080 0.920 17 C -0.225 4.225 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.237 1.237 22 H -0.191 1.191 23 C -0.022 4.022 24 C -0.022 4.022 25 O -0.301 6.301 26 C -0.075 4.075 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.146 0.854 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.638 12.827 -18.640 29.314 hybrid contribution 0.637 -1.175 0.401 1.395 sum -18.001 11.653 -18.239 28.151 Atomic orbital electron populations 1.21783 0.94405 1.01880 1.02006 1.21191 0.96243 0.96265 0.97371 1.21642 0.94132 0.96365 1.02528 1.22204 0.96446 0.99246 0.89240 1.61539 1.10525 1.15249 1.39329 1.21975 0.89798 1.04501 0.92446 1.21183 0.81664 0.77546 0.90134 1.90670 1.50316 1.48289 1.55478 1.45781 1.08450 1.65577 1.16751 1.21109 0.92190 0.99754 0.85634 1.22548 0.93751 0.84069 0.97292 0.91058 1.21940 0.85648 0.99402 0.96095 1.44492 1.04132 1.04669 1.81469 1.18878 0.91874 0.96080 1.30958 0.91976 1.25811 1.00943 0.95766 0.99987 1.69924 1.41780 1.01410 1.46572 0.86108 0.81287 0.77430 0.78649 1.19880 1.23731 1.19130 1.21904 0.99463 0.83864 0.96926 1.23122 0.80496 1.02418 0.96175 1.87840 1.24049 1.23703 1.94464 1.22160 0.96694 0.88386 1.00295 1.21581 0.93949 1.00469 0.98479 0.91609 0.92624 0.93177 0.91055 0.92273 0.89595 0.89315 0.93854 0.85282 0.89778 0.74744 0.90905 0.91759 0.94862 0.91942 0.92786 0.90692 0.94673 0.92796 0.85436 0.94749 0.91813 0.92862 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.20 71.98 0.66 -1.05 16 2 C -0.09 -1.28 2.79 -10.71 -0.03 -1.31 16 3 C -0.11 -1.41 5.38 30.65 0.16 -1.24 16 4 C 0.06 0.75 5.46 86.33 0.47 1.22 16 5 N -0.54 -10.62 4.40 -900.92 -3.96 -14.58 16 6 C 0.04 0.74 5.45 85.56 0.47 1.20 16 7 C 0.51 12.91 7.50 87.66 0.66 13.57 16 8 O -0.57 -19.68 14.33 -3.03 -0.04 -19.72 16 9 N -0.71 -16.90 5.50 -463.07 -2.55 -19.45 16 10 C 0.14 4.16 5.34 86.38 0.46 4.62 16 11 C 0.08 2.73 2.81 30.69 0.09 2.81 16 12 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 13 C 0.10 4.00 3.67 86.36 0.32 4.32 16 14 N -0.62 -28.64 2.84 -697.53 -1.98 -30.62 16 15 C -0.25 -13.79 10.10 84.03 0.85 -12.94 16 16 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 17 C -0.03 -1.72 5.26 84.86 0.45 -1.27 16 18 N -0.95 -59.01 13.97 21.65 0.30 -58.70 16 19 Si 0.94 46.75 24.28 68.60 1.67 48.42 16 20 H -0.27 -12.84 6.58 99.48 0.65 -12.18 16 21 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 22 H -0.27 -13.01 6.54 99.48 0.65 -12.36 16 23 C 0.10 3.74 6.73 86.35 0.58 4.32 16 24 C 0.06 1.55 6.99 72.08 0.50 2.05 16 25 O -0.38 -11.62 10.33 -148.98 -1.54 -13.16 16 26 C 0.05 1.12 5.11 86.32 0.44 1.56 16 27 C -0.11 -2.01 5.38 30.65 0.16 -1.84 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.96 8.02 -2.39 -0.02 0.94 16 35 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.13 1.55 7.99 -2.38 -0.02 1.53 16 37 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 38 H 0.42 7.51 8.47 -92.71 -0.79 6.73 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.03 1.44 6.86 -2.39 -0.02 1.42 16 42 H 0.06 2.88 4.61 -2.39 -0.01 2.87 16 43 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 44 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 1.77 5.78 -2.39 -0.01 1.76 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.14 387.49 -1.85 -74.00 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.00 Total: 17.79 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.24 Total: 16.02 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -8.19 Total: -123.35 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.58 Total: -32.88 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.67 Total: 48.42 kcal Total: -72.14 -1.85 -74.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds