Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99475 * 2 1 4 4 H 1.48504 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47575 * 300.00267 * 3 2 1 6 6 H 1.48508 * 109.46978 * 60.00781 * 3 2 1 7 7 C 1.38806 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99851 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99716 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47385 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46732 * 54.99828 * 11 10 9 13 13 C 1.53003 * 109.46858 * 295.00230 * 11 10 9 14 14 C 1.53000 * 109.46858 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47037 * 59.99722 * 14 13 11 16 16 C 1.52995 * 109.47404 * 300.00045 * 15 14 13 17 17 C 1.52995 * 109.47337 * 175.00082 * 11 10 9 18 18 H 1.09007 * 109.47080 * 299.99517 * 17 11 10 19 19 N 1.46499 * 109.47455 * 60.00113 * 17 11 10 20 20 C 1.34777 * 120.00199 * 205.00257 * 19 17 11 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 17 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 17 23 23 N 1.46902 * 109.47027 * 179.72353 * 22 20 19 24 24 C 1.47009 * 110.99715 * 293.63172 * 23 22 20 25 25 C 1.53099 * 109.25734 * 177.60649 * 24 23 22 26 26 O 1.43018 * 109.25400 * 56.85201 * 25 24 23 27 27 C 1.43014 * 113.73874 * 301.32703 * 26 25 24 28 28 C 1.47014 * 110.99760 * 170.00137 * 23 22 20 29 29 H 0.96999 * 120.00504 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00022 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47180 * 60.00238 * 10 9 7 32 32 H 1.09005 * 109.47090 * 300.00644 * 10 9 7 33 33 H 1.08995 * 109.47171 * 59.99895 * 13 11 10 34 34 H 1.08993 * 109.46950 * 299.99244 * 13 11 10 35 35 H 1.08998 * 109.47074 * 300.00061 * 14 13 11 36 36 H 1.08998 * 109.46925 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47307 * 179.97438 * 15 14 13 38 38 H 1.09007 * 109.47147 * 60.00129 * 15 14 13 39 39 H 1.08998 * 109.46943 * 299.99534 * 16 15 14 40 40 H 1.09005 * 109.47038 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99484 * 24.99354 * 19 17 11 42 42 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 43 43 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 44 44 H 1.08997 * 109.50792 * 297.54662 * 24 23 22 45 45 H 1.09007 * 109.50894 * 57.67782 * 24 23 22 46 46 H 1.08995 * 109.50873 * 296.91840 * 25 24 23 47 47 H 1.09003 * 109.54443 * 176.80574 * 25 24 23 48 48 H 1.09005 * 109.50677 * 298.73778 * 27 26 25 49 49 H 1.08998 * 109.54116 * 178.63249 * 27 26 25 50 50 H 1.09008 * 109.50310 * 302.32158 * 28 23 22 51 51 H 1.08992 * 109.51131 * 62.45270 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8913 2.3964 1.2127 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.3803 -4.7126 -0.8433 13 6 0.2688 -4.8115 1.3059 14 6 -0.7257 -5.9741 1.3050 15 6 0.0348 -7.2957 1.1789 16 6 0.8301 -7.3039 -0.1281 17 6 1.8251 -6.1410 -0.1269 18 1 2.3916 -6.1469 -1.0581 19 7 2.7441 -6.2849 1.0049 20 6 3.8436 -7.0553 0.8864 21 8 4.0719 -7.6299 -0.1570 22 6 4.7858 -7.2083 2.0526 23 7 5.8932 -8.0963 1.6743 24 6 5.4133 -9.4658 1.4390 25 6 6.5862 -10.3417 0.9904 26 8 7.6175 -10.2919 1.9800 27 6 8.1086 -8.9729 2.2338 28 6 6.9511 -8.0832 2.6950 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.6849 -3.7144 0.8895 32 1 2.6850 -3.7143 -0.8905 33 1 -0.2733 -3.8702 1.3954 34 1 0.9526 -4.9186 2.1479 35 1 -1.4094 -5.8667 0.4629 36 1 -1.2920 -5.9686 2.2363 37 1 -0.6736 -8.1241 1.1787 38 1 0.7186 -7.4032 2.0210 39 1 0.1463 -7.1966 -0.9701 40 1 1.3716 -8.2457 -0.2180 41 1 2.5614 -5.8256 1.8394 42 1 5.1819 -6.2314 2.3302 43 1 4.2494 -7.6367 2.8992 44 1 4.9910 -9.8669 2.3603 45 1 4.6490 -9.4552 0.6618 46 1 6.9743 -9.9721 0.0413 47 1 6.2474 -11.3706 0.8692 48 1 8.5410 -8.5635 1.3208 49 1 8.8707 -9.0112 3.0121 50 1 7.3094 -7.0632 2.8348 51 1 6.5535 -8.4622 3.6364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = -74.465308 kcal Electronic energy + Delta-G solvation = -29006.503980 eV Core-core repulsion = 25133.568944 eV Total energy + Delta-G solvation = -3872.935036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51532 -39.59023 -38.11130 -35.63896 -34.66138 -33.62353 -31.93955 -31.40625 -30.39475 -29.64003 -28.76548 -25.52091 -24.91659 -24.26166 -23.01587 -22.23658 -21.13112 -20.67545 -20.40481 -18.93995 -17.53718 -17.02700 -16.78291 -16.32416 -15.83433 -15.54898 -15.33136 -15.21455 -14.86542 -14.66243 -14.50709 -14.14771 -13.84686 -13.71893 -13.42309 -13.25909 -13.09500 -12.78706 -12.51969 -12.33177 -12.07467 -11.97071 -11.75855 -11.61107 -11.50561 -11.40260 -10.91801 -10.90426 -10.83777 -10.75194 -10.37181 -10.19303 -10.10824 -9.98737 -9.86717 -9.65216 -9.57207 -8.93059 -8.83534 -8.63021 -6.92969 -5.78482 -3.06704 2.68153 2.99158 3.41816 3.47960 3.49872 3.57408 3.71810 4.54683 4.57731 4.64400 4.72310 4.82427 4.86787 4.87860 4.90479 4.95717 4.98483 5.09359 5.18835 5.24156 5.29020 5.32116 5.42434 5.50309 5.55673 5.58854 5.62275 5.65699 5.67780 5.72022 5.73549 5.81766 6.03658 6.12437 6.14247 6.21914 6.25795 6.36496 6.46556 6.53918 6.61363 6.64910 6.66593 6.80077 6.87062 6.88603 7.59651 7.69434 8.31059 8.40734 9.52114 10.09931 10.44601 11.44469 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002926 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.420036 B = 9567.184540 C =11208.756613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.157 3.843 18 H 0.087 0.913 19 N -0.716 5.716 20 C 0.515 3.485 21 O -0.528 6.528 22 C 0.034 3.966 23 N -0.518 5.518 24 C 0.014 3.986 25 C 0.066 3.934 26 O -0.390 6.390 27 C 0.065 3.935 28 C 0.017 3.983 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.400 0.600 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -20.814 6.707 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.103 0.897 13 C -0.147 4.147 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.166 4.166 17 C 0.052 3.948 18 H 0.105 0.895 19 N -0.369 5.369 20 C 0.300 3.700 21 O -0.404 6.404 22 C -0.097 4.097 23 N -0.243 5.243 24 C -0.114 4.114 25 C -0.011 4.011 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.116 0.884 50 H 0.107 0.893 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.965 -21.096 5.597 23.234 hybrid contribution -0.476 1.317 1.089 1.774 sum 7.489 -19.779 6.687 22.181 Atomic orbital electron populations 1.69661 1.05081 1.25515 1.58001 1.24724 0.95516 0.97654 1.03115 0.86136 0.78818 0.84183 0.77181 1.20576 1.21868 1.21907 1.19265 0.91035 0.84197 1.42357 0.91252 1.42378 1.05823 0.99928 1.89431 1.20632 0.92962 0.85301 0.97791 1.21626 0.97815 0.93472 0.99169 0.89707 1.21524 0.97627 0.98954 0.96628 1.21587 0.98075 0.94525 1.01658 1.21483 0.98570 0.97504 0.97677 1.21901 0.97914 0.98541 0.98234 1.20936 0.89663 0.94393 0.89819 0.89453 1.46103 1.23930 1.49747 1.17091 1.20346 0.81171 0.79069 0.89383 1.90650 1.73898 1.46372 1.29520 1.22007 0.92596 0.99570 0.95527 1.61843 1.10047 1.08848 1.43600 1.22967 0.99062 0.87758 1.01625 1.22655 0.87118 0.99859 0.91473 1.87961 1.54914 1.27802 1.60132 1.22640 0.94852 0.82567 1.01161 1.22836 0.93475 1.01556 0.93246 0.93588 0.78231 0.96473 0.96465 0.90296 0.92748 0.91893 0.92311 0.92567 0.92439 0.91069 0.91898 0.76462 0.87531 0.91927 0.94613 0.87564 0.91954 0.88541 0.92072 0.88423 0.89332 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.94 5.33 -59.91 -0.32 -18.26 16 10 C 0.16 3.11 5.42 -4.04 -0.02 3.09 16 11 C -0.10 -1.52 2.02 -90.62 -0.18 -1.71 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.52 4.90 -26.73 -0.13 -1.65 16 14 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.11 -1.19 5.77 -26.73 -0.15 -1.35 16 16 C -0.13 -1.46 5.61 -26.71 -0.15 -1.61 16 17 C 0.16 2.06 2.23 -67.91 -0.15 1.91 16 18 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 19 N -0.72 -8.45 3.62 -53.78 -0.19 -8.64 16 20 C 0.52 6.48 7.50 -10.98 -0.08 6.40 16 21 O -0.53 -8.36 14.01 5.55 0.08 -8.29 16 22 C 0.03 0.34 5.45 -4.97 -0.03 0.31 16 23 N -0.52 -5.57 4.46 -235.75 -1.05 -6.62 16 24 C 0.01 0.14 5.29 -3.71 -0.02 0.12 16 25 C 0.07 0.65 7.01 37.21 0.26 0.91 16 26 O -0.39 -4.15 10.83 -35.23 -0.38 -4.53 16 27 C 0.06 0.56 7.01 37.21 0.26 0.82 16 28 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 31 H 0.02 0.33 7.61 -51.93 -0.40 -0.06 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 34 H 0.05 0.70 6.50 -51.93 -0.34 0.36 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.58 7.61 -51.93 -0.39 0.19 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.40 4.23 6.67 -40.82 -0.27 3.96 16 42 H 0.11 0.93 8.04 -51.93 -0.42 0.52 16 43 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 1.29 5.88 -51.93 -0.31 0.98 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.65 8.09 -51.92 -0.42 0.23 16 51 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -32.37 389.54 -10.17 -42.54 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -9.05 Total: 9.20 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.82 Total: -1.40 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.84 Total: -60.68 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.30 Total: -12.82 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.37 -10.17 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.922 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds